Wall clock time and date at job start Tue Mar 31 2020 00:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48508 * 109.46935 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99043 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99777 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 C 1.53004 * 109.47231 * 180.02562 * 15 14 13 17 17 S 1.81393 * 109.47440 * 180.02562 * 16 15 14 18 18 N 1.65595 * 104.45037 * 180.02562 * 17 16 15 19 19 O 1.42107 * 110.54259 * 291.62261 * 17 16 15 20 20 O 1.42099 * 110.54637 * 68.37706 * 17 16 15 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 23 23 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 24 24 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 25 25 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 26 26 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 27 27 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 28 28 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 29 29 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 30 30 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 31 31 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 32 32 H 1.09001 * 109.46812 * 300.00718 * 16 15 14 33 33 H 1.09002 * 109.47047 * 59.99836 * 16 15 14 34 34 H 0.97000 * 120.00749 * 150.00433 * 18 17 16 35 35 H 0.97000 * 120.00264 * 329.99487 * 18 17 16 36 36 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 37 37 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 6 3.5983 -7.0491 -3.4057 17 16 3.9612 -7.3148 -5.1630 18 7 4.4846 -8.8838 -5.2442 19 8 2.7628 -7.3058 -5.9266 20 8 5.0892 -6.5476 -5.5609 21 6 2.2350 -3.6865 -0.0722 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2327 -1.9035 1.2436 24 1 -0.6629 -2.7545 -1.0032 25 1 0.5035 -1.7313 -1.8934 26 1 0.3255 -4.7428 -1.7457 27 1 0.9060 -3.7050 -3.0847 28 1 3.6996 -5.5501 -1.1310 29 1 2.0260 -6.0964 -1.3934 30 1 2.1933 -5.4609 -3.7843 31 1 3.8669 -4.9146 -3.5219 32 1 4.5041 -7.2062 -2.8201 33 1 2.8303 -7.7519 -3.0826 34 1 4.3340 -9.4044 -6.0487 35 1 4.9419 -9.2823 -4.4873 36 1 3.2146 -3.3920 0.3043 37 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118197318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:20 Heat of formation + Delta-G solvation = -124.414569 kcal Electronic energy + Delta-G solvation = -20136.955604 eV Core-core repulsion = 16848.127188 eV Total energy + Delta-G solvation = -3288.828416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.51078 -37.18708 -36.10379 -35.60946 -33.51625 -33.47544 -32.08222 -29.61879 -28.00078 -25.95640 -24.08538 -22.01917 -20.21596 -19.66744 -19.35958 -17.84045 -17.50594 -17.01453 -16.40161 -15.83837 -15.16047 -15.03789 -14.79385 -14.37737 -13.85048 -13.53664 -13.01546 -12.41763 -12.37433 -12.35121 -12.25509 -12.13374 -11.97148 -11.94693 -11.40387 -11.17078 -11.07518 -10.87673 -10.72720 -10.58852 -10.46584 -10.38012 -10.27101 -9.90491 -9.03455 -8.55111 -8.12285 -7.89235 -6.14769 -4.20326 0.02915 2.65011 3.28285 3.34931 3.39126 3.45583 4.06578 4.19012 4.37464 4.66761 4.76219 4.98407 5.12984 5.23297 5.42999 5.60884 5.68258 5.69602 5.83183 5.99282 6.04962 6.14972 6.19153 6.36178 6.49741 6.71465 6.86328 7.04377 7.20841 7.53874 7.65371 7.68238 7.87122 8.22999 8.82149 9.43547 9.52466 10.92766 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.003641 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.590648 B = 7689.060446 C = 8025.898342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.028 3.972 13 N -0.503 5.503 14 C 0.053 3.947 15 C -0.107 4.107 16 C -0.618 4.618 17 S 2.616 3.384 18 N -1.254 6.254 19 O -0.963 6.963 20 O -0.960 6.960 21 C 0.054 3.946 22 H 0.265 0.735 23 H 0.383 0.617 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.418 0.582 35 H 0.412 0.588 36 H 0.077 0.923 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -16.805 -6.583 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.160 4.160 12 C -0.099 4.099 13 N -0.227 5.227 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.749 4.749 17 S 2.707 3.293 18 N -0.926 5.926 19 O -0.953 6.953 20 O -0.949 6.949 21 C -0.074 4.074 22 H 0.075 0.925 23 H 0.233 0.767 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.248 0.752 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.342 -16.064 -7.509 18.832 hybrid contribution -0.377 0.096 0.927 1.006 sum 5.965 -15.968 -6.582 18.273 Atomic orbital electron populations 1.69695 1.05911 1.27294 1.51209 1.25011 0.94994 0.99437 0.94142 0.86462 0.79814 0.82753 0.78159 1.20563 1.21270 1.19849 1.21643 0.93565 0.90365 1.50163 0.91958 1.19256 0.86445 0.91553 0.81893 1.86076 1.52125 1.55784 1.46458 1.22860 0.98288 0.95581 0.99275 1.23260 0.88340 0.98575 0.99757 1.65304 1.21650 1.20543 1.15251 1.22152 1.00203 0.90918 0.94423 1.21269 1.02839 0.90695 0.99846 1.30440 1.11733 1.07478 1.25231 1.04736 0.74559 0.72949 0.77025 1.53286 1.77169 1.35108 1.26993 1.93610 1.48550 1.85459 1.67665 1.93630 1.51819 1.69541 1.79919 1.22981 1.00470 0.97372 0.86558 0.92475 0.76696 0.93049 0.90527 0.95205 0.91381 0.90833 0.94755 0.90183 0.89130 0.84826 0.84796 0.75216 0.76236 0.90426 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 10.81 55.43 0.60 -23.64 16 2 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.05 8.10 -34.44 -0.28 -14.33 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 9 C 0.25 6.19 1.05 -90.39 -0.10 6.09 16 10 O -0.60 -15.49 12.94 -35.23 -0.46 -15.95 16 11 C -0.12 -2.82 5.55 -25.35 -0.14 -2.97 16 12 C 0.03 0.55 5.93 -2.09 -0.01 0.54 16 13 N -0.50 -9.59 5.34 -229.83 -1.23 -10.81 16 14 C 0.05 0.76 4.83 -3.82 -0.02 0.74 16 15 C -0.11 -1.29 5.34 -26.73 -0.14 -1.43 16 16 C -0.62 -4.69 6.17 37.16 0.23 -4.46 16 17 S 2.62 23.57 5.97 -107.50 -0.64 22.93 16 18 N -1.25 -6.35 9.36 60.35 0.57 -5.78 16 19 O -0.96 -12.48 18.10 -57.54 -1.04 -13.52 16 20 O -0.96 -12.68 18.10 -57.54 -1.04 -13.72 16 21 C 0.05 1.15 5.74 -2.18 -0.01 1.14 16 22 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.38 10.07 7.32 45.56 0.33 10.40 16 24 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 25 H 0.08 1.95 7.23 -51.93 -0.38 1.58 16 26 H 0.03 0.54 7.75 -51.93 -0.40 0.13 16 27 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16 28 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.03 0.47 7.77 -51.93 -0.40 0.06 16 30 H 0.08 0.99 7.47 -51.93 -0.39 0.60 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.42 1.78 8.96 -34.47 -0.31 1.47 16 35 H 0.41 0.90 8.96 -34.47 -0.31 0.60 16 36 H 0.08 1.67 7.67 -51.93 -0.40 1.27 16 37 H 0.03 0.64 7.94 -51.93 -0.41 0.22 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -34.71 314.49 -8.79 -43.50 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.71 Total: 9.24 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.56 Total: -13.02 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.06 Total: -40.23 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -2.54 Total: -43.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 23.57 SS G_CDS: -0.64 Total: 22.93 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.71 -8.79 -43.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118197318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.916 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds