Wall clock time and date at job start Tue Mar 31 2020 00:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48508 * 109.46935 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99043 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99777 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 C 1.53004 * 109.47231 * 180.02562 * 15 14 13 17 17 S 1.81393 * 109.47440 * 180.02562 * 16 15 14 18 18 N 1.65595 * 104.45037 * 180.02562 * 17 16 15 19 19 O 1.42107 * 110.54259 * 291.62261 * 17 16 15 20 20 O 1.42099 * 110.54637 * 68.37706 * 17 16 15 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 23 23 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 24 24 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 25 25 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 26 26 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 27 27 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 28 28 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 29 29 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 30 30 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 31 31 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 32 32 H 1.09001 * 109.46812 * 300.00718 * 16 15 14 33 33 H 1.09002 * 109.47047 * 59.99836 * 16 15 14 34 34 H 0.97000 * 120.00749 * 150.00433 * 18 17 16 35 35 H 0.97000 * 120.00264 * 329.99487 * 18 17 16 36 36 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 37 37 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 6 3.5983 -7.0491 -3.4057 17 16 3.9612 -7.3148 -5.1630 18 7 4.4846 -8.8838 -5.2442 19 8 2.7628 -7.3058 -5.9266 20 8 5.0892 -6.5476 -5.5609 21 6 2.2350 -3.6865 -0.0722 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2327 -1.9035 1.2436 24 1 -0.6629 -2.7545 -1.0032 25 1 0.5035 -1.7313 -1.8934 26 1 0.3255 -4.7428 -1.7457 27 1 0.9060 -3.7050 -3.0847 28 1 3.6996 -5.5501 -1.1310 29 1 2.0260 -6.0964 -1.3934 30 1 2.1933 -5.4609 -3.7843 31 1 3.8669 -4.9146 -3.5219 32 1 4.5041 -7.2062 -2.8201 33 1 2.8303 -7.7519 -3.0826 34 1 4.3340 -9.4044 -6.0487 35 1 4.9419 -9.2823 -4.4873 36 1 3.2146 -3.3920 0.3043 37 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118197318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:19 Heat of formation + Delta-G solvation = -156.809998 kcal Electronic energy + Delta-G solvation = -20138.360375 eV Core-core repulsion = 16848.127188 eV Total energy + Delta-G solvation = -3290.233188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13295 -38.04167 -37.18466 -36.94192 -34.79533 -34.14485 -33.97574 -31.12426 -29.74555 -27.41812 -25.74312 -23.20605 -21.65746 -21.24511 -20.30816 -19.03051 -18.48057 -18.15738 -17.23307 -17.05519 -16.80802 -16.26100 -16.16449 -15.77979 -15.58303 -14.85927 -14.38804 -14.06451 -13.72876 -13.49669 -13.18675 -13.15110 -13.11773 -13.06432 -13.01473 -12.86169 -12.60846 -12.34592 -12.31730 -12.12852 -11.92047 -11.66046 -11.57026 -11.13828 -10.91305 -10.59190 -10.11869 -9.34786 -8.18453 -6.30996 -0.67122 1.41433 1.43350 1.52704 2.04662 2.41512 2.74024 2.98420 3.15322 3.45034 3.74107 3.86308 3.99108 4.01108 4.25306 4.33223 4.42989 4.47908 4.58379 4.64905 4.75036 4.87014 4.94648 5.07626 5.12215 5.25795 5.33232 5.38416 5.66916 5.78934 5.97107 6.18521 6.28426 6.43277 6.74022 7.36978 7.44822 8.87315 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.003641 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.590648 B = 7689.060446 C = 8025.898342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.229 3.771 10 O -0.602 6.602 11 C -0.115 4.115 12 C 0.037 3.963 13 N -0.516 5.516 14 C 0.050 3.950 15 C -0.115 4.115 16 C -0.600 4.600 17 S 2.632 3.368 18 N -1.237 6.237 19 O -1.007 7.007 20 O -1.008 7.008 21 C 0.063 3.937 22 H 0.267 0.733 23 H 0.376 0.624 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.425 0.575 35 H 0.428 0.572 36 H 0.072 0.928 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 -18.539 -6.473 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.189 3.811 10 O -0.410 6.410 11 C -0.154 4.154 12 C -0.091 4.091 13 N -0.241 5.241 14 C -0.079 4.079 15 C -0.155 4.155 16 C -0.732 4.732 17 S 2.726 3.274 18 N -0.914 5.914 19 O -0.997 6.997 20 O -0.997 6.997 21 C -0.065 4.065 22 H 0.076 0.924 23 H 0.226 0.774 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.256 0.744 35 H 0.258 0.742 36 H 0.090 0.910 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.232 -17.830 -7.421 20.622 hybrid contribution -0.651 0.596 0.936 1.286 sum 6.581 -17.234 -6.485 19.554 Atomic orbital electron populations 1.69776 1.06731 1.27928 1.51159 1.25670 0.95825 1.02171 0.93809 0.85573 0.78700 0.79339 0.78059 1.20391 1.20656 1.19722 1.21885 0.93324 0.91962 1.50890 0.92980 1.19553 0.87138 0.92429 0.81935 1.86068 1.52113 1.55452 1.47398 1.22652 0.97710 0.96419 0.98656 1.23168 0.88791 0.97154 0.99971 1.65255 1.21271 1.24278 1.13314 1.22312 1.01149 0.88366 0.96121 1.21261 1.02622 0.93373 0.98199 1.30259 1.14179 1.05269 1.23511 1.03893 0.73058 0.73162 0.77290 1.52817 1.76921 1.33592 1.28061 1.93555 1.50074 1.86309 1.69724 1.93580 1.53296 1.71403 1.81415 1.22792 0.99054 0.96223 0.88465 0.92364 0.77402 0.94031 0.93612 0.93329 0.90076 0.89204 0.93163 0.90809 0.90137 0.81537 0.81823 0.74413 0.74243 0.90989 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.91 10.81 21.45 0.23 -49.68 16 2 C 0.02 1.34 5.02 84.66 0.43 1.76 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -29.74 8.10 25.60 0.21 -29.54 16 8 H 0.05 2.88 7.53 -2.91 -0.02 2.86 16 9 C 0.23 11.48 1.05 -10.65 -0.01 11.46 16 10 O -0.60 -31.65 12.94 -148.98 -1.93 -33.57 16 11 C -0.12 -5.43 5.55 31.49 0.17 -5.25 16 12 C 0.04 1.38 5.93 86.42 0.51 1.89 16 13 N -0.52 -18.84 5.34 -881.04 -4.70 -23.54 16 14 C 0.05 1.27 4.83 86.30 0.42 1.68 16 15 C -0.12 -2.47 5.34 30.60 0.16 -2.31 16 16 C -0.60 -6.84 6.17 71.98 0.44 -6.39 16 17 S 2.63 42.80 5.97 -56.49 -0.34 42.46 16 18 N -1.24 -9.26 9.36 37.02 0.35 -8.92 16 19 O -1.01 -25.16 18.10 -127.65 -2.31 -27.47 16 20 O -1.01 -25.84 18.10 -127.65 -2.31 -28.15 16 21 C 0.06 2.63 5.74 86.45 0.50 3.12 16 22 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 23 H 0.38 20.27 7.32 -74.06 -0.54 19.73 16 24 H 0.04 1.97 7.98 -2.39 -0.02 1.95 16 25 H 0.04 2.38 7.23 -2.39 -0.02 2.37 16 26 H 0.05 1.63 7.75 -2.38 -0.02 1.61 16 27 H 0.08 2.80 7.86 -2.39 -0.02 2.78 16 28 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 29 H 0.05 1.15 7.77 -2.39 -0.02 1.13 16 30 H 0.07 1.67 7.47 -2.39 -0.02 1.65 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.42 2.66 8.96 -96.74 -0.87 1.79 16 35 H 0.43 0.39 8.96 -96.75 -0.87 -0.48 16 36 H 0.07 3.06 7.67 -2.39 -0.02 3.04 16 37 H 0.04 1.55 7.94 -2.39 -0.02 1.53 16 Total: -1.00 -75.83 314.49 -7.33 -83.16 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -1.17 Total: 23.87 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 2.83 Total: -23.57 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -4.12 Total: -82.13 kcal Atomic # 8 Polarization: -82.64 SS G_CDS: -6.55 Total: -89.19 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 42.80 SS G_CDS: -0.34 Total: 42.46 kcal Total: -75.83 -7.33 -83.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118197318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.654 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds