Wall clock time and date at job start Tue Mar 31 2020 00:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00159 * 2 1 4 4 H 1.48501 * 109.47251 * 239.99600 * 3 2 1 5 5 H 1.48504 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47378 * 119.99944 * 3 2 1 7 7 C 1.37879 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00170 * 165.33595 * 7 2 1 9 9 C 1.50703 * 119.99712 * 345.33294 * 7 2 1 10 10 C 1.52995 * 115.55415 * 324.82914 * 9 7 2 11 11 O 1.45203 * 109.47183 * 306.34759 * 10 9 7 12 12 C 1.34871 * 117.00374 * 183.79334 * 11 10 9 13 13 O 1.21603 * 119.99783 * 4.87111 * 12 11 10 14 14 C 1.46627 * 119.99994 * 184.86949 * 12 11 10 15 15 C 1.36446 * 125.85803 * 175.07465 * 14 12 11 16 16 C 1.41253 * 107.00498 * 180.24180 * 15 14 12 17 17 C 1.47393 * 126.45270 * 179.76210 * 16 15 14 18 18 N 1.34782 * 119.99844 * 180.02562 * 17 16 15 19 19 O 1.21609 * 120.00509 * 359.97438 * 17 16 15 20 20 C 1.38247 * 107.08877 * 359.60763 * 16 15 14 21 21 N 1.34231 * 108.41051 * 0.39725 * 20 16 15 22 22 H 0.97008 * 125.38991 * 179.76713 * 21 20 16 23 23 C 1.53002 * 117.49404 * 110.49714 * 9 7 2 24 24 C 1.52999 * 117.49720 * 179.15184 * 9 7 2 25 25 H 0.97001 * 120.00144 * 5.03647 * 1 2 3 26 26 H 1.08996 * 109.47257 * 186.34460 * 10 9 7 27 27 H 1.09000 * 109.47170 * 66.34520 * 10 9 7 28 28 H 1.08003 * 126.49874 * 359.97438 * 15 14 12 29 29 H 0.96999 * 120.00147 * 359.97438 * 18 17 16 30 30 H 0.96999 * 120.00196 * 179.97438 * 18 17 16 31 31 H 1.07994 * 125.78944 * 180.17545 * 20 16 15 32 32 H 1.09006 * 117.49653 * 215.00444 * 23 9 7 33 33 H 1.08994 * 117.50201 * 0.02562 * 23 9 7 34 34 H 1.08997 * 117.50286 * 359.97438 * 24 9 7 35 35 H 1.09003 * 117.49495 * 144.98000 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0580 -1.2094 -0.2362 9 6 1.2878 -2.4778 0.3316 10 6 0.1870 -2.3655 1.3882 11 8 0.7261 -1.7437 2.5846 12 6 -0.0991 -1.6413 3.6464 13 8 -1.2079 -2.1388 3.6049 14 6 0.3409 -0.9301 4.8509 15 6 -0.4236 -0.6734 5.9516 16 6 0.3903 0.0339 6.8640 17 6 -0.0100 0.5284 8.1935 18 7 0.8772 1.1923 8.9608 19 8 -1.1410 0.3382 8.5979 20 6 1.6341 0.1718 6.2765 21 7 1.5975 -0.4063 5.0656 22 1 2.3383 -0.4490 4.4408 23 6 1.0780 -3.4825 -0.8031 24 6 2.1035 -3.7717 0.2958 25 1 -0.4850 0.8368 -0.0737 26 1 -0.1853 -3.3604 1.6321 27 1 -0.6295 -1.7572 0.9991 28 1 -1.4566 -0.9537 6.0958 29 1 1.7793 1.3443 8.6382 30 1 0.6137 1.5181 9.8356 31 1 2.4889 0.6645 6.7156 32 1 0.1556 -4.0634 -0.7968 33 1 1.4586 -3.2152 -1.7888 34 1 3.1583 -3.6946 0.0325 35 1 1.8561 -4.5428 1.0255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118392470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:40 Heat of formation + Delta-G solvation = -56.596288 kcal Electronic energy + Delta-G solvation = -21141.500535 eV Core-core repulsion = 17720.168989 eV Total energy + Delta-G solvation = -3421.331546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49799 -39.33499 -38.71607 -36.78021 -35.13738 -33.75532 -32.26417 -31.26640 -29.72659 -26.73550 -25.46964 -23.52339 -22.83977 -21.30153 -20.18345 -19.68684 -19.28193 -18.62333 -16.97343 -16.73705 -16.32914 -15.99979 -15.66856 -14.98432 -14.88715 -14.63213 -13.93490 -13.81387 -13.66741 -13.40222 -13.07267 -12.42662 -12.14077 -12.08093 -11.69191 -11.06086 -10.96830 -10.59898 -10.43773 -10.21788 -10.13603 -9.78752 -9.65327 -9.55324 -9.24071 -9.15326 -8.84881 -8.43683 -8.19903 -6.16910 -4.18433 1.43965 1.78474 2.99220 3.16696 3.22888 3.25145 3.25966 3.38841 3.60842 3.68672 4.25665 4.72389 4.83560 4.87440 5.13307 5.30752 5.46847 5.79951 5.91367 5.95517 6.11776 6.35454 6.42922 6.52838 6.56930 6.65743 6.69905 6.75160 6.88713 7.17683 7.21868 7.28049 7.30295 7.36432 7.79025 8.24040 8.27096 8.45449 8.75742 9.40248 10.86233 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.004964 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.090116 B = 5638.788837 C = 6384.372429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.489 4.489 8 H 0.062 0.938 9 C 0.048 3.952 10 C 0.117 3.883 11 O -0.329 6.329 12 C 0.525 3.475 13 O -0.510 6.510 14 C -0.024 4.024 15 C -0.049 4.049 16 C -0.245 4.245 17 C 0.597 3.403 18 N -0.857 5.857 19 O -0.547 6.547 20 C 0.071 3.929 21 N -0.505 5.505 22 H 0.434 0.566 23 C -0.191 4.191 24 C -0.210 4.210 25 H 0.265 0.735 26 H 0.032 0.968 27 H 0.112 0.888 28 H 0.160 0.840 29 H 0.398 0.602 30 H 0.402 0.598 31 H 0.181 0.819 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 2.031 12.422 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.127 4.127 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.526 4.526 8 H 0.080 0.920 9 C 0.048 3.952 10 C 0.044 3.956 11 O -0.244 6.244 12 C 0.369 3.631 13 O -0.400 6.400 14 C -0.134 4.134 15 C -0.073 4.073 16 C -0.256 4.256 17 C 0.385 3.615 18 N -0.420 5.420 19 O -0.425 6.425 20 C -0.073 4.073 21 N -0.099 5.099 22 H 0.274 0.726 23 C -0.229 4.229 24 C -0.247 4.247 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.129 0.871 28 H 0.177 0.823 29 H 0.226 0.774 30 H 0.232 0.768 31 H 0.198 0.802 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.266 1.724 12.331 13.518 hybrid contribution 1.165 1.022 -0.276 1.574 sum 6.431 2.746 12.055 13.936 Atomic orbital electron populations 1.69801 1.06138 1.27308 1.48184 1.24927 0.94684 0.99094 0.93986 0.86640 0.79678 0.82887 0.78703 1.20156 1.21198 1.20223 1.20350 0.95281 0.89192 1.47783 0.91956 1.18865 0.94395 0.89349 0.92633 1.22839 0.98506 0.94604 0.79602 1.86540 1.42924 1.72964 1.21969 1.19748 0.83365 0.77303 0.82690 1.90847 1.21091 1.45365 1.82675 1.19341 0.86619 1.10484 0.96964 1.21047 0.99760 0.96634 0.89899 1.19475 0.95033 1.13540 0.97507 1.17374 0.84282 0.76417 0.83475 1.43670 1.15690 1.60973 1.21713 1.90819 1.20041 1.57948 1.73679 1.22401 0.98923 0.99542 0.86397 1.41875 1.12351 1.40673 1.14965 0.72623 1.22969 0.98795 1.05991 0.95128 1.22976 0.96703 1.02348 1.02675 0.92451 0.94938 0.87070 0.82282 0.77409 0.76755 0.80235 0.91386 0.89718 0.90318 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.69 10.95 55.43 0.61 -23.08 16 2 C 0.08 1.99 5.13 -17.82 -0.09 1.90 16 3 Si 0.89 19.93 29.57 -169.99 -5.03 14.90 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.49 -12.61 8.75 -34.44 -0.30 -12.92 16 8 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 9 C 0.05 1.15 2.10 -155.66 -0.33 0.82 16 10 C 0.12 2.80 4.66 37.15 0.17 2.97 16 11 O -0.33 -7.40 9.88 -40.96 -0.40 -7.80 16 12 C 0.52 11.01 7.93 34.12 0.27 11.29 16 13 O -0.51 -11.83 16.59 -19.34 -0.32 -12.15 16 14 C -0.02 -0.41 7.02 -82.43 -0.58 -0.99 16 15 C -0.05 -0.79 10.37 -39.08 -0.41 -1.20 16 16 C -0.25 -3.23 6.13 -105.02 -0.64 -3.87 16 17 C 0.60 7.71 8.09 -12.53 -0.10 7.61 16 18 N -0.86 -6.43 8.86 30.43 0.27 -6.16 16 19 O -0.55 -9.49 17.75 5.27 0.09 -9.40 16 20 C 0.07 0.71 11.43 -16.50 -0.19 0.53 16 21 N -0.51 -6.52 6.01 -9.32 -0.06 -6.58 16 22 H 0.43 5.05 8.96 -40.82 -0.37 4.68 16 23 C -0.19 -4.14 9.96 -26.69 -0.27 -4.41 16 24 C -0.21 -4.36 9.92 -26.70 -0.26 -4.63 16 25 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16 26 H 0.03 0.74 7.95 -51.93 -0.41 0.32 16 27 H 0.11 2.95 6.12 -51.93 -0.32 2.63 16 28 H 0.16 2.68 8.06 -52.48 -0.42 2.25 16 29 H 0.40 1.65 7.74 -40.82 -0.32 1.33 16 30 H 0.40 2.49 8.93 -40.82 -0.36 2.13 16 31 H 0.18 0.83 7.44 -52.49 -0.39 0.44 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -33.09 316.34 -6.62 -39.71 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.83 Total: 8.68 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.73 Total: -2.89 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.82 Total: -35.82 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.63 Total: -29.35 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.09 -6.62 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118392470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.885 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds