Wall clock time and date at job start Tue Mar 31 2020 00:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00159 * 2 1 4 4 H 1.48501 * 109.47251 * 239.99600 * 3 2 1 5 5 H 1.48504 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47378 * 119.99944 * 3 2 1 7 7 C 1.37879 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00170 * 165.33595 * 7 2 1 9 9 C 1.50703 * 119.99712 * 345.33294 * 7 2 1 10 10 C 1.52995 * 115.55415 * 324.82914 * 9 7 2 11 11 O 1.45203 * 109.47183 * 306.34759 * 10 9 7 12 12 C 1.34871 * 117.00374 * 183.79334 * 11 10 9 13 13 O 1.21603 * 119.99783 * 4.87111 * 12 11 10 14 14 C 1.46627 * 119.99994 * 184.86949 * 12 11 10 15 15 C 1.36446 * 125.85803 * 175.07465 * 14 12 11 16 16 C 1.41253 * 107.00498 * 180.24180 * 15 14 12 17 17 C 1.47393 * 126.45270 * 179.76210 * 16 15 14 18 18 N 1.34782 * 119.99844 * 180.02562 * 17 16 15 19 19 O 1.21609 * 120.00509 * 359.97438 * 17 16 15 20 20 C 1.38247 * 107.08877 * 359.60763 * 16 15 14 21 21 N 1.34231 * 108.41051 * 0.39725 * 20 16 15 22 22 H 0.97008 * 125.38991 * 179.76713 * 21 20 16 23 23 C 1.53002 * 117.49404 * 110.49714 * 9 7 2 24 24 C 1.52999 * 117.49720 * 179.15184 * 9 7 2 25 25 H 0.97001 * 120.00144 * 5.03647 * 1 2 3 26 26 H 1.08996 * 109.47257 * 186.34460 * 10 9 7 27 27 H 1.09000 * 109.47170 * 66.34520 * 10 9 7 28 28 H 1.08003 * 126.49874 * 359.97438 * 15 14 12 29 29 H 0.96999 * 120.00147 * 359.97438 * 18 17 16 30 30 H 0.96999 * 120.00196 * 179.97438 * 18 17 16 31 31 H 1.07994 * 125.78944 * 180.17545 * 20 16 15 32 32 H 1.09006 * 117.49653 * 215.00444 * 23 9 7 33 33 H 1.08994 * 117.50201 * 0.02562 * 23 9 7 34 34 H 1.08997 * 117.50286 * 359.97438 * 24 9 7 35 35 H 1.09003 * 117.49495 * 144.98000 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0580 -1.2094 -0.2362 9 6 1.2878 -2.4778 0.3316 10 6 0.1870 -2.3655 1.3882 11 8 0.7261 -1.7437 2.5846 12 6 -0.0991 -1.6413 3.6464 13 8 -1.2079 -2.1388 3.6049 14 6 0.3409 -0.9301 4.8509 15 6 -0.4236 -0.6734 5.9516 16 6 0.3903 0.0339 6.8640 17 6 -0.0100 0.5284 8.1935 18 7 0.8772 1.1923 8.9608 19 8 -1.1410 0.3382 8.5979 20 6 1.6341 0.1718 6.2765 21 7 1.5975 -0.4063 5.0656 22 1 2.3383 -0.4490 4.4408 23 6 1.0780 -3.4825 -0.8031 24 6 2.1035 -3.7717 0.2958 25 1 -0.4850 0.8368 -0.0737 26 1 -0.1853 -3.3604 1.6321 27 1 -0.6295 -1.7572 0.9991 28 1 -1.4566 -0.9537 6.0958 29 1 1.7793 1.3443 8.6382 30 1 0.6137 1.5181 9.8356 31 1 2.4889 0.6645 6.7156 32 1 0.1556 -4.0634 -0.7968 33 1 1.4586 -3.2152 -1.7888 34 1 3.1583 -3.6946 0.0325 35 1 1.8561 -4.5428 1.0255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118392470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:39 Heat of formation + Delta-G solvation = -80.945313 kcal Electronic energy + Delta-G solvation = -21142.556388 eV Core-core repulsion = 17720.168989 eV Total energy + Delta-G solvation = -3422.387399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64020 -40.91663 -39.80669 -38.54300 -36.87208 -34.65460 -34.20279 -32.35888 -30.95571 -28.46539 -27.39673 -24.70940 -24.06322 -23.00129 -21.41460 -21.13868 -20.72882 -19.89695 -18.57593 -17.90625 -17.64416 -17.35160 -17.21783 -16.57149 -16.34294 -15.92679 -15.52151 -15.05882 -14.84181 -14.77756 -14.48590 -13.91214 -13.82897 -13.54811 -13.43973 -12.84055 -12.79467 -12.35805 -12.15371 -11.91944 -11.48634 -11.35538 -11.22137 -11.12149 -10.66595 -10.63509 -10.27075 -10.07540 -9.53906 -8.10274 -6.18243 0.18792 0.72772 1.42285 1.43577 1.52419 1.66315 1.95971 2.07163 2.41567 2.52286 2.75938 3.00247 3.55469 3.80966 3.85258 4.00966 4.17539 4.20068 4.34865 4.55066 4.69492 4.74723 4.80924 4.90397 4.95115 5.16287 5.30110 5.35864 5.49175 5.52228 5.63332 5.79951 5.99056 6.28748 6.32393 6.59599 6.73297 6.84170 7.43177 7.45751 8.91021 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.004964 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.090116 B = 5638.788837 C = 6384.372429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.033 3.967 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.126 3.874 11 O -0.333 6.333 12 C 0.520 3.480 13 O -0.548 6.548 14 C -0.060 4.060 15 C -0.055 4.055 16 C -0.267 4.267 17 C 0.597 3.403 18 N -0.826 5.826 19 O -0.603 6.603 20 C 0.130 3.870 21 N -0.500 5.500 22 H 0.442 0.558 23 C -0.190 4.190 24 C -0.184 4.184 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.419 0.581 30 H 0.413 0.587 31 H 0.250 0.750 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 3.261 13.999 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.182 1.182 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.012 3.988 10 C 0.053 3.947 11 O -0.248 6.248 12 C 0.367 3.633 13 O -0.440 6.440 14 C -0.170 4.170 15 C -0.081 4.081 16 C -0.276 4.276 17 C 0.384 3.616 18 N -0.390 5.390 19 O -0.486 6.486 20 C -0.015 4.015 21 N -0.094 5.094 22 H 0.284 0.716 23 C -0.227 4.227 24 C -0.221 4.221 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.155 0.845 29 H 0.251 0.749 30 H 0.245 0.755 31 H 0.266 0.734 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.677 2.962 13.915 16.664 hybrid contribution 0.180 0.648 -0.686 0.961 sum 8.857 3.611 13.229 16.324 Atomic orbital electron populations 1.69973 1.07554 1.27490 1.49521 1.25621 0.95243 1.02128 0.93751 0.85746 0.78496 0.78800 0.79482 1.19765 1.21938 1.18156 1.20596 0.95270 0.90295 1.47653 0.92072 1.18990 0.95767 0.90182 0.93878 1.22539 0.97842 0.93997 0.80345 1.86529 1.43191 1.73150 1.21959 1.20397 0.82841 0.76828 0.83193 1.90807 1.22566 1.47265 1.83394 1.18793 0.89058 1.13298 0.95802 1.21079 0.99379 0.96865 0.90787 1.19555 0.95926 1.14345 0.97779 1.17380 0.84091 0.76557 0.83593 1.43368 1.15765 1.58552 1.21324 1.90802 1.22565 1.60425 1.74760 1.23400 0.99147 0.95040 0.83891 1.41890 1.10990 1.40372 1.16138 0.71615 1.22979 0.99781 1.05145 0.94838 1.22988 0.96838 1.00403 1.01852 0.93055 0.94686 0.90400 0.84472 0.74895 0.75531 0.73407 0.90406 0.89931 0.89265 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.29 10.95 21.45 0.23 -50.05 16 2 C 0.03 1.72 5.13 84.66 0.43 2.15 16 3 Si 0.95 40.27 29.57 68.60 2.03 42.30 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.50 -25.74 8.75 25.60 0.22 -25.51 16 8 H 0.06 3.07 7.86 -2.92 -0.02 3.05 16 9 C 0.01 0.59 2.10 -52.93 -0.11 0.48 16 10 C 0.13 6.20 4.66 71.98 0.34 6.54 16 11 O -0.33 -15.32 9.88 -57.85 -0.57 -15.89 16 12 C 0.52 22.70 7.93 70.01 0.55 23.25 16 13 O -0.55 -27.02 16.59 19.50 0.32 -26.69 16 14 C -0.06 -2.06 7.02 39.97 0.28 -1.78 16 15 C -0.06 -1.82 10.37 22.59 0.23 -1.59 16 16 C -0.27 -6.42 6.13 -20.12 -0.12 -6.54 16 17 C 0.60 14.16 8.09 86.65 0.70 14.86 16 18 N -0.83 -9.05 8.86 -175.90 -1.56 -10.61 16 19 O -0.60 -20.92 17.75 -4.06 -0.07 -20.99 16 20 C 0.13 1.98 11.43 84.33 0.96 2.94 16 21 N -0.50 -11.51 6.01 -183.41 -1.10 -12.62 16 22 H 0.44 8.89 8.96 -92.70 -0.83 8.06 16 23 C -0.19 -8.13 9.96 30.62 0.30 -7.83 16 24 C -0.18 -7.35 9.92 30.62 0.30 -7.05 16 25 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 26 H 0.03 1.64 7.95 -2.39 -0.02 1.63 16 27 H 0.08 4.35 6.12 -2.39 -0.01 4.34 16 28 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 29 H 0.42 0.99 7.74 -92.71 -0.72 0.28 16 30 H 0.41 3.62 8.93 -92.71 -0.83 2.79 16 31 H 0.25 0.20 7.44 -2.91 -0.02 0.18 16 32 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 33 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -76.99 316.34 2.18 -74.81 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -1.21 Total: 19.82 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.10 Total: -0.08 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -2.43 Total: -73.28 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.32 Total: -63.57 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -76.99 2.18 -74.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118392470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.133 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds