Wall clock time and date at job start Mon Mar 30 2020 23:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86795 * 119.99567 * 2 1 4 4 H 1.48504 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47231 * 300.00057 * 3 2 1 6 6 H 1.48500 * 109.47166 * 60.00313 * 3 2 1 7 7 C 1.40124 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.46191 * 120.00235 * 359.97438 * 7 2 1 10 10 O 1.21729 * 120.00144 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00277 * 179.97438 * 9 7 2 12 12 C 1.39094 * 120.00445 * 185.28351 * 11 9 7 13 13 C 1.39256 * 119.94001 * 213.89194 * 12 11 9 14 14 C 1.37631 * 120.06374 * 180.25170 * 13 12 11 15 15 C 1.39773 * 119.93501 * 359.49731 * 14 13 12 16 16 C 1.47599 * 120.05997 * 180.27455 * 15 14 13 17 17 O 1.21582 * 120.00099 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99962 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00223 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47366 * 179.97438 * 19 18 16 21 21 O 1.42902 * 109.46855 * 64.99789 * 20 19 18 22 22 C 1.39781 * 119.87821 * 0.25214 * 15 14 13 23 23 C 1.37622 * 119.93345 * 359.97438 * 22 15 14 24 24 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99732 * 5.28978 * 11 9 7 26 26 H 1.07999 * 119.96900 * 0.02562 * 13 12 11 27 27 H 1.08002 * 120.03338 * 179.76881 * 14 13 12 28 28 H 0.97009 * 119.99950 * 359.97438 * 18 16 15 29 29 H 1.08994 * 109.46996 * 299.99726 * 19 18 16 30 30 H 1.09004 * 109.46967 * 60.00055 * 19 18 16 31 31 H 1.08999 * 109.47477 * 184.99872 * 20 19 18 32 32 H 1.08994 * 109.47310 * 305.00320 * 20 19 18 33 33 H 0.96701 * 113.99955 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.03140 * 180.02562 * 22 15 14 35 35 H 1.08007 * 119.96911 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8815 2.3965 -1.2126 6 1 1.8815 2.3964 1.2125 7 6 2.0071 -1.2135 -0.0005 8 1 3.0871 -1.2135 -0.0010 9 6 1.2762 -2.4796 -0.0005 10 8 0.0589 -2.4797 -0.0005 11 7 1.9500 -3.6468 -0.0016 12 6 1.2590 -4.8488 -0.1125 13 6 1.7263 -5.9826 0.5474 14 6 1.0474 -7.1745 0.4352 15 6 -0.1180 -7.2438 -0.3335 16 6 -0.8515 -8.5192 -0.4507 17 8 -0.4420 -9.5109 0.1212 18 7 -1.9748 -8.5848 -1.1927 19 6 -2.7026 -9.8508 -1.3096 20 6 -3.9308 -9.6527 -2.2002 21 8 -3.5098 -9.3346 -3.5282 22 6 -0.5876 -6.1029 -0.9905 23 6 0.0979 -4.9149 -0.8786 24 1 -0.4850 0.8400 0.0004 25 1 2.9170 -3.6485 0.0751 26 1 2.6243 -5.9274 1.1448 27 1 1.4123 -8.0544 0.9442 28 1 -2.3014 -7.7936 -1.6493 29 1 -2.0512 -10.6050 -1.7510 30 1 -3.0210 -10.1796 -0.3202 31 1 -4.5202 -10.5695 -2.2157 32 1 -4.5375 -8.8373 -1.8064 33 1 -4.2381 -9.1956 -4.1491 34 1 -1.4880 -6.1536 -1.5847 35 1 -0.2647 -4.0329 -1.3857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118759537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:31 Heat of formation + Delta-G solvation = -101.527092 kcal Electronic energy + Delta-G solvation = -20421.815857 eV Core-core repulsion = 16998.535965 eV Total energy + Delta-G solvation = -3423.279892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96009 -38.83946 -37.38114 -36.69434 -34.44830 -33.58178 -32.56435 -30.62954 -29.99498 -28.57825 -26.42388 -23.63946 -22.45656 -22.09345 -20.61463 -19.69074 -17.93413 -17.73392 -17.63693 -16.36383 -16.16362 -15.59104 -15.12766 -14.78630 -14.49024 -14.28522 -13.90592 -13.76542 -13.28252 -13.12085 -12.85360 -12.68417 -12.52572 -12.05541 -11.82055 -11.62986 -11.33516 -11.17375 -10.79119 -10.64777 -10.47898 -10.37370 -9.71198 -9.44304 -9.06656 -8.96742 -8.56571 -7.87068 -7.22264 -6.44042 -4.91442 1.35367 1.91821 3.00532 3.09913 3.14193 3.21230 3.27044 3.88456 3.92206 4.21434 4.46535 4.51074 4.69050 4.84292 5.00647 5.12777 5.22601 5.43633 5.51149 5.54171 5.66932 5.77622 5.99986 6.10687 6.45332 6.48549 6.71514 6.82466 6.93830 7.19045 7.24498 7.25307 7.61753 7.62461 7.92635 8.05701 8.40067 8.76173 9.07801 10.26696 10.46456 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.003345 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.821366 B = 8368.755446 C = 9107.898170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.539 3.461 10 O -0.557 6.557 11 N -0.696 5.696 12 C 0.226 3.774 13 C -0.190 4.190 14 C -0.033 4.033 15 C -0.196 4.196 16 C 0.569 3.431 17 O -0.555 6.555 18 N -0.728 5.728 19 C 0.121 3.879 20 C 0.063 3.937 21 O -0.570 6.570 22 C -0.061 4.061 23 C -0.141 4.141 24 H 0.272 0.728 25 H 0.396 0.604 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.404 0.596 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.381 0.619 34 H 0.117 0.883 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -12.769 -4.293 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.347 3.653 10 O -0.438 6.438 11 N -0.337 5.337 12 C 0.124 3.876 13 C -0.212 4.212 14 C -0.052 4.052 15 C -0.201 4.201 16 C 0.359 3.641 17 O -0.435 6.435 18 N -0.381 5.381 19 C -0.003 4.003 20 C -0.015 4.015 21 O -0.376 6.376 22 C -0.081 4.081 23 C -0.162 4.162 24 H 0.083 0.917 25 H 0.230 0.770 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.229 0.771 34 H 0.135 0.865 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.690 -13.296 -3.621 14.557 hybrid contribution 0.097 1.250 -0.357 1.304 sum -4.593 -12.046 -3.978 13.491 Atomic orbital electron populations 1.69988 1.07191 1.27864 1.33467 1.25762 0.94739 1.00632 0.92468 0.86200 0.80460 0.81074 0.78437 1.18585 1.19931 1.19947 1.20910 0.93934 0.88892 1.53404 0.90802 1.18448 0.87534 0.82062 0.77299 1.90644 1.13618 1.85959 1.53620 1.44242 1.09988 1.04509 1.75009 1.18213 0.92512 0.86467 0.90366 1.20868 1.03597 0.92916 1.03769 1.20831 0.92449 0.97109 0.94844 1.19521 0.99850 0.93102 1.07588 1.18335 0.79711 0.88426 0.77624 1.90713 1.67911 1.37428 1.47406 1.45815 1.27140 1.12922 1.52229 1.21340 0.92786 0.87319 0.98840 1.22456 0.95914 0.99987 0.83178 1.86555 1.37534 1.93407 1.20082 1.21028 0.98198 0.91813 0.97021 1.21255 0.96610 0.98200 1.00145 0.91669 0.76999 0.85774 0.85384 0.76052 0.90845 0.90133 0.91992 0.92727 0.77140 0.86484 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.29 11.83 55.55 0.66 -20.63 16 2 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.91 29.56 -169.99 -5.02 13.89 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.54 -14.10 9.54 -35.68 -0.34 -14.44 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.54 14.36 7.46 -13.07 -0.10 14.27 16 10 O -0.56 -16.68 12.69 5.16 0.07 -16.61 16 11 N -0.70 -14.95 5.30 -11.19 -0.06 -15.01 16 12 C 0.23 4.56 6.27 -83.81 -0.53 4.03 16 13 C -0.19 -3.28 9.94 -39.42 -0.39 -3.67 16 14 C -0.03 -0.55 9.58 -39.23 -0.38 -0.93 16 15 C -0.20 -3.33 5.88 -104.93 -0.62 -3.95 16 16 C 0.57 9.34 7.76 -12.44 -0.10 9.25 16 17 O -0.55 -10.52 16.34 5.29 0.09 -10.43 16 18 N -0.73 -9.44 5.45 -61.33 -0.33 -9.78 16 19 C 0.12 1.28 6.06 -4.04 -0.02 1.26 16 20 C 0.06 0.46 7.18 37.16 0.27 0.73 16 21 O -0.57 -4.82 13.60 -35.23 -0.48 -5.30 16 22 C -0.06 -1.04 9.53 -39.23 -0.37 -1.41 16 23 C -0.14 -2.86 8.62 -39.43 -0.34 -3.20 16 24 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 25 H 0.40 7.21 8.79 -40.82 -0.36 6.85 16 26 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.13 2.01 7.64 -52.49 -0.40 1.61 16 28 H 0.40 4.66 6.49 -40.82 -0.26 4.40 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.38 1.45 9.12 45.56 0.42 1.86 16 34 H 0.12 1.63 6.39 -52.49 -0.34 1.29 16 35 H 0.14 3.28 6.41 -52.48 -0.34 2.95 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -35.01 311.03 -6.35 -41.36 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -2.94 Total: 13.75 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.01 Total: 4.06 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.26 Total: -45.42 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.33 Total: -32.34 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.01 -6.35 -41.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118759537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.162 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds