Wall clock time and date at job start Mon Mar 30 2020 23:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86795 * 119.99567 * 2 1 4 4 H 1.48504 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47231 * 300.00057 * 3 2 1 6 6 H 1.48500 * 109.47166 * 60.00313 * 3 2 1 7 7 C 1.40124 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.46191 * 120.00235 * 359.97438 * 7 2 1 10 10 O 1.21729 * 120.00144 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00277 * 179.97438 * 9 7 2 12 12 C 1.39094 * 120.00445 * 185.28351 * 11 9 7 13 13 C 1.39256 * 119.94001 * 213.89194 * 12 11 9 14 14 C 1.37631 * 120.06374 * 180.25170 * 13 12 11 15 15 C 1.39773 * 119.93501 * 359.49731 * 14 13 12 16 16 C 1.47599 * 120.05997 * 180.27455 * 15 14 13 17 17 O 1.21582 * 120.00099 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99962 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00223 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47366 * 179.97438 * 19 18 16 21 21 O 1.42902 * 109.46855 * 64.99789 * 20 19 18 22 22 C 1.39781 * 119.87821 * 0.25214 * 15 14 13 23 23 C 1.37622 * 119.93345 * 359.97438 * 22 15 14 24 24 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99732 * 5.28978 * 11 9 7 26 26 H 1.07999 * 119.96900 * 0.02562 * 13 12 11 27 27 H 1.08002 * 120.03338 * 179.76881 * 14 13 12 28 28 H 0.97009 * 119.99950 * 359.97438 * 18 16 15 29 29 H 1.08994 * 109.46996 * 299.99726 * 19 18 16 30 30 H 1.09004 * 109.46967 * 60.00055 * 19 18 16 31 31 H 1.08999 * 109.47477 * 184.99872 * 20 19 18 32 32 H 1.08994 * 109.47310 * 305.00320 * 20 19 18 33 33 H 0.96701 * 113.99955 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.03140 * 180.02562 * 22 15 14 35 35 H 1.08007 * 119.96911 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 -0.0006 5 1 1.8815 2.3965 -1.2126 6 1 1.8815 2.3964 1.2125 7 6 2.0071 -1.2135 -0.0005 8 1 3.0871 -1.2135 -0.0010 9 6 1.2762 -2.4796 -0.0005 10 8 0.0589 -2.4797 -0.0005 11 7 1.9500 -3.6468 -0.0016 12 6 1.2590 -4.8488 -0.1125 13 6 1.7263 -5.9826 0.5474 14 6 1.0474 -7.1745 0.4352 15 6 -0.1180 -7.2438 -0.3335 16 6 -0.8515 -8.5192 -0.4507 17 8 -0.4420 -9.5109 0.1212 18 7 -1.9748 -8.5848 -1.1927 19 6 -2.7026 -9.8508 -1.3096 20 6 -3.9308 -9.6527 -2.2002 21 8 -3.5098 -9.3346 -3.5282 22 6 -0.5876 -6.1029 -0.9905 23 6 0.0979 -4.9149 -0.8786 24 1 -0.4850 0.8400 0.0004 25 1 2.9170 -3.6485 0.0751 26 1 2.6243 -5.9274 1.1448 27 1 1.4123 -8.0544 0.9442 28 1 -2.3014 -7.7936 -1.6493 29 1 -2.0512 -10.6050 -1.7510 30 1 -3.0210 -10.1796 -0.3202 31 1 -4.5202 -10.5695 -2.2157 32 1 -4.5375 -8.8373 -1.8064 33 1 -4.2381 -9.1956 -4.1491 34 1 -1.4880 -6.1536 -1.5847 35 1 -0.2647 -4.0329 -1.3857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118759537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:30 Heat of formation + Delta-G solvation = -130.615225 kcal Electronic energy + Delta-G solvation = -20423.077213 eV Core-core repulsion = 16998.535965 eV Total energy + Delta-G solvation = -3424.541248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34218 -40.37508 -38.55324 -37.94780 -35.55621 -35.30597 -34.54652 -31.99883 -31.36415 -29.78055 -28.27675 -24.94656 -23.78905 -23.26590 -22.10273 -21.25858 -19.51234 -18.99655 -18.50945 -17.88967 -17.63382 -17.24407 -16.25533 -16.09551 -15.90219 -15.65418 -15.18280 -15.03178 -14.77176 -14.54057 -14.27423 -13.97859 -13.79895 -13.55936 -13.35476 -13.10192 -12.81764 -12.73290 -12.33741 -12.12724 -11.99202 -11.19340 -11.13685 -10.89605 -10.88362 -10.16644 -10.08786 -9.81623 -8.86511 -8.38915 -6.96298 -0.08904 0.47896 1.39193 1.41415 1.58840 1.82009 2.18183 2.20643 2.38994 2.83256 2.95972 3.33733 3.54843 3.81545 3.87187 4.02429 4.06843 4.23493 4.38749 4.51514 4.54465 4.67580 4.76484 4.87095 5.04198 5.25087 5.27889 5.35594 5.40743 5.43235 5.72813 5.79044 6.13616 6.29095 6.47690 6.76754 6.90612 7.16579 7.27256 8.30673 8.54371 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.003345 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.821366 B = 8368.755446 C = 9107.898170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.562 4.562 8 H 0.094 0.906 9 C 0.528 3.472 10 O -0.602 6.602 11 N -0.689 5.689 12 C 0.195 3.805 13 C -0.174 4.174 14 C -0.035 4.035 15 C -0.193 4.193 16 C 0.567 3.433 17 O -0.582 6.582 18 N -0.715 5.715 19 C 0.112 3.888 20 C 0.069 3.931 21 O -0.595 6.595 22 C -0.050 4.050 23 C -0.163 4.163 24 H 0.278 0.722 25 H 0.411 0.589 26 H 0.152 0.848 27 H 0.145 0.855 28 H 0.411 0.589 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.145 0.855 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -13.391 -4.389 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.112 0.888 9 C 0.335 3.665 10 O -0.487 6.487 11 N -0.332 5.332 12 C 0.096 3.904 13 C -0.195 4.195 14 C -0.054 4.054 15 C -0.197 4.197 16 C 0.356 3.644 17 O -0.464 6.464 18 N -0.367 5.367 19 C -0.011 4.011 20 C -0.009 4.009 21 O -0.404 6.404 22 C -0.070 4.070 23 C -0.184 4.184 24 H 0.088 0.912 25 H 0.247 0.753 26 H 0.170 0.830 27 H 0.162 0.838 28 H 0.248 0.752 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.252 0.748 34 H 0.163 0.837 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.281 -13.970 -3.751 15.085 hybrid contribution -0.108 1.248 -0.369 1.306 sum -4.389 -12.721 -4.120 14.073 Atomic orbital electron populations 1.70137 1.09492 1.29394 1.34869 1.26983 0.95571 1.04954 0.91134 0.84917 0.79386 0.75163 0.78562 1.16913 1.19314 1.19388 1.21445 0.95097 0.89460 1.53741 0.88800 1.18755 0.87238 0.83680 0.76817 1.90602 1.15466 1.87059 1.55569 1.43761 1.10581 1.03912 1.74964 1.18453 0.93151 0.86816 0.91994 1.21058 1.04071 0.91681 1.02714 1.21097 0.92297 0.97440 0.94591 1.19768 0.99849 0.93392 1.06709 1.18245 0.80494 0.87625 0.78010 1.90702 1.68877 1.38026 1.48818 1.45827 1.25991 1.14265 1.50639 1.21594 0.93654 0.85728 1.00104 1.22441 0.94272 1.01841 0.82300 1.86492 1.39419 1.93586 1.20894 1.21172 0.98570 0.90531 0.96691 1.21110 0.97749 0.98246 1.01307 0.91159 0.75299 0.83020 0.83755 0.75186 0.92105 0.89489 0.89334 0.91412 0.74842 0.83715 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.92 11.83 21.85 0.26 -46.66 16 2 C 0.03 1.59 5.50 85.33 0.47 2.06 16 3 Si 1.00 38.60 29.56 68.60 2.03 40.63 16 4 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.56 -29.96 9.54 24.79 0.24 -29.72 16 8 H 0.09 4.44 7.85 -2.91 -0.02 4.41 16 9 C 0.53 29.02 7.46 86.31 0.64 29.67 16 10 O -0.60 -37.78 12.69 -4.44 -0.06 -37.84 16 11 N -0.69 -30.12 5.30 -307.52 -1.63 -31.75 16 12 C 0.20 7.97 6.27 38.48 0.24 8.21 16 13 C -0.17 -5.79 9.94 22.37 0.22 -5.57 16 14 C -0.03 -1.12 9.58 22.50 0.22 -0.90 16 15 C -0.19 -6.33 5.88 -20.06 -0.12 -6.45 16 16 C 0.57 17.83 7.76 86.71 0.67 18.50 16 17 O -0.58 -21.34 16.34 -3.97 -0.06 -21.41 16 18 N -0.72 -17.34 5.45 -466.21 -2.54 -19.88 16 19 C 0.11 2.17 6.06 86.38 0.52 2.70 16 20 C 0.07 0.83 7.18 71.98 0.52 1.34 16 21 O -0.59 -8.70 13.60 -148.98 -2.03 -10.72 16 22 C -0.05 -1.69 9.53 22.50 0.21 -1.48 16 23 C -0.16 -6.81 8.62 22.37 0.19 -6.62 16 24 H 0.28 14.53 8.29 -92.71 -0.77 13.76 16 25 H 0.41 14.91 8.79 -92.71 -0.82 14.09 16 26 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 27 H 0.14 4.22 7.64 -2.91 -0.02 4.20 16 28 H 0.41 8.69 6.49 -92.70 -0.60 8.09 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.40 2.09 9.12 -74.06 -0.68 1.42 16 34 H 0.15 3.89 6.39 -2.91 -0.02 3.87 16 35 H 0.11 5.34 6.41 -2.91 -0.02 5.32 16 Total: -1.00 -78.24 311.03 -0.92 -79.16 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.92 Total: 36.72 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 4.03 Total: 11.74 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.91 Total: -98.29 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -2.15 Total: -69.97 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -78.24 -0.92 -79.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118759537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.452 kcal (2) G-P(sol) polarization free energy of solvation -78.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds