Wall clock time and date at job start Tue Mar 31 2020 00:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21681 * 119.99638 * 179.86226 * 13 12 11 15 15 C 1.46723 * 120.00049 * 359.86343 * 13 12 11 16 16 C 1.36339 * 126.64353 * 359.68893 * 15 13 12 17 17 N 1.33693 * 107.45381 * 179.89420 * 16 15 13 18 18 C 1.30615 * 108.99062 * 0.37433 * 17 16 15 19 19 C 1.50704 * 125.41723 * 179.74154 * 18 17 16 20 20 C 1.52995 * 117.50362 * 8.64997 * 19 18 17 21 21 C 1.52998 * 117.50340 * 300.02122 * 19 18 17 22 22 O 1.33661 * 109.15650 * 359.76494 * 18 17 16 23 23 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 26 26 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 27 27 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 28 28 H 1.08000 * 126.27579 * 0.02562 * 16 15 13 29 29 H 1.09004 * 115.54574 * 154.35029 * 19 18 17 30 30 H 1.09007 * 117.49855 * 359.97438 * 20 19 18 31 31 H 1.08998 * 117.50578 * 145.01857 * 20 19 18 32 32 H 1.08996 * 117.50098 * 214.97959 * 21 19 18 33 33 H 1.09006 * 117.49346 * 359.97438 * 21 19 18 34 34 H 1.09004 * 113.77444 * 221.15143 * 23 12 11 35 35 H 1.09004 * 113.87147 * 89.76886 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3866 -6.4960 0.9218 15 6 -0.1938 -5.7112 2.4402 16 6 -0.8830 -4.7282 3.0863 17 7 -1.7304 -5.3224 3.9325 18 6 -1.5859 -6.6172 3.8396 19 6 -2.3554 -7.6411 4.6337 20 6 -3.5285 -7.1430 5.4801 21 6 -2.2322 -7.5916 6.1579 22 8 -0.6465 -6.8894 2.9286 23 6 2.1610 -3.7398 0.0582 24 1 -0.4850 0.8400 0.0004 25 1 -0.3471 -1.8018 -1.0246 26 1 1.3268 -2.4870 2.2200 27 1 -0.3218 -2.8255 1.5318 28 1 -0.7673 -3.6644 2.9397 29 1 -2.4512 -8.6221 4.1680 30 1 -3.7435 -6.0744 5.4630 31 1 -4.3964 -7.7960 5.5715 32 1 -2.2474 -8.5399 6.6951 33 1 -1.5942 -6.8186 6.5863 34 1 2.2032 -4.2939 -0.8796 35 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119261371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:22 Heat of formation + Delta-G solvation = 11.620878 kcal Electronic energy + Delta-G solvation = -21262.170325 eV Core-core repulsion = 17843.796897 eV Total energy + Delta-G solvation = -3418.373428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.30888 -39.58959 -37.62731 -37.25196 -34.77248 -34.01932 -32.30801 -30.76858 -28.46070 -25.82009 -25.58237 -24.22430 -23.14329 -22.62107 -20.73687 -20.35403 -19.03625 -17.66187 -17.24588 -16.76225 -16.69789 -15.90209 -15.21167 -14.96229 -14.74168 -14.53862 -14.28583 -13.46451 -13.27108 -12.72342 -12.56206 -12.44703 -12.13342 -11.85545 -11.66363 -11.54252 -11.18571 -11.11242 -11.01017 -10.95828 -10.72257 -10.56736 -10.38486 -9.88480 -9.42249 -8.86006 -8.77542 -8.55919 -8.03959 -6.47197 -4.57956 0.97707 2.18312 2.43182 3.10087 3.20314 3.23533 3.45850 3.48300 3.54919 3.99885 4.13442 4.44333 4.56319 4.65835 4.76316 4.88122 5.01818 5.33443 5.38221 5.43696 5.60110 5.66090 5.74008 5.81776 5.87691 6.03687 6.17681 6.28514 6.32709 6.45062 6.53008 6.96328 7.55500 7.62327 7.71129 8.14786 8.45943 8.46789 9.13592 9.32670 10.59910 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.004183 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.581625 B = 6691.419032 C = 7325.415044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.067 3.933 12 N -0.616 5.616 13 C 0.611 3.389 14 O -0.547 6.547 15 C -0.081 4.081 16 C 0.018 3.982 17 N -0.483 5.483 18 C 0.229 3.771 19 C -0.083 4.083 20 C -0.144 4.144 21 C -0.154 4.154 22 O -0.169 6.169 23 C 0.121 3.879 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.201 0.799 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 -7.941 9.846 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.092 0.908 9 C 0.200 3.800 10 O -0.383 6.383 11 C -0.055 4.055 12 N -0.350 5.350 13 C 0.399 3.601 14 O -0.427 6.427 15 C -0.137 4.137 16 C -0.125 4.125 17 N -0.213 5.213 18 C 0.024 3.976 19 C -0.102 4.102 20 C -0.182 4.182 21 C -0.192 4.192 22 O -0.054 6.054 23 C 0.001 3.999 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.218 0.782 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.790 -8.856 9.883 14.108 hybrid contribution 0.545 1.116 -0.269 1.271 sum -4.245 -7.740 9.614 13.052 Atomic orbital electron populations 1.69400 1.06178 1.28279 1.49766 1.25070 0.95040 0.99949 0.92909 0.86264 0.80094 0.82182 0.77918 1.19399 1.20602 1.20634 1.21496 0.94034 0.89644 1.52474 0.90773 1.19813 0.85678 0.91255 0.83298 1.86076 1.47041 1.49843 1.55306 1.24695 1.00390 0.76853 1.03548 1.49896 1.40163 1.03662 1.41277 1.15875 0.80951 0.82969 0.80309 1.90801 1.55983 1.38953 1.57002 1.22904 1.04035 0.82982 1.03797 1.24176 0.93084 1.01693 0.93522 1.70277 1.23498 1.04490 1.23003 1.25361 0.89608 0.92006 0.90577 1.20097 1.01841 0.96331 0.91921 1.23112 0.91535 1.03640 0.99880 1.23140 1.00864 1.04007 0.91205 1.84433 1.43580 1.33238 1.44149 1.23585 0.93148 0.92357 0.90856 0.91592 0.75183 0.89099 0.90602 0.78239 0.84710 0.86892 0.87392 0.87350 0.87902 0.90502 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.72 11.21 55.43 0.62 -21.10 16 2 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 3 Si 0.91 18.75 29.54 -169.99 -5.02 13.73 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -12.82 8.61 -34.44 -0.30 -13.12 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 5.49 1.40 -90.85 -0.13 5.37 16 10 O -0.57 -14.07 13.49 -35.23 -0.48 -14.55 16 11 C 0.07 1.36 6.54 -2.84 -0.02 1.34 16 12 N -0.62 -12.86 3.61 -179.65 -0.65 -13.51 16 13 C 0.61 13.27 8.02 -12.83 -0.10 13.17 16 14 O -0.55 -13.35 17.84 1.34 0.02 -13.32 16 15 C -0.08 -1.58 7.22 -36.84 -0.27 -1.85 16 16 C 0.02 0.31 10.97 -17.43 -0.19 0.12 16 17 N -0.48 -8.01 10.79 -10.81 -0.12 -8.12 16 18 C 0.23 3.54 7.87 -12.79 -0.10 3.44 16 19 C -0.08 -0.87 6.33 -91.77 -0.58 -1.45 16 20 C -0.14 -1.21 10.13 -26.73 -0.27 -1.48 16 21 C -0.15 -1.26 10.23 -26.73 -0.27 -1.54 16 22 O -0.17 -3.12 10.79 0.59 0.01 -3.11 16 23 C 0.12 2.52 8.23 -2.97 -0.02 2.50 16 24 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 25 H 0.39 9.77 6.61 45.56 0.30 10.07 16 26 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 27 H 0.08 1.51 6.29 -51.92 -0.33 1.19 16 28 H 0.20 3.30 5.08 -52.49 -0.27 3.03 16 29 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.11 1.11 7.87 -51.93 -0.41 0.70 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -28.89 308.40 -6.51 -35.40 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.20 Total: 11.80 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -2.35 Total: 8.15 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.14 Total: -42.73 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.44 Total: -30.99 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.89 -6.51 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119261371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.018 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds