Wall clock time and date at job start Tue Mar 31 2020 00:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21681 * 119.99638 * 179.86226 * 13 12 11 15 15 C 1.46723 * 120.00049 * 359.86343 * 13 12 11 16 16 C 1.36339 * 126.64353 * 359.68893 * 15 13 12 17 17 N 1.33693 * 107.45381 * 179.89420 * 16 15 13 18 18 C 1.30615 * 108.99062 * 0.37433 * 17 16 15 19 19 C 1.50704 * 125.41723 * 179.74154 * 18 17 16 20 20 C 1.52995 * 117.50362 * 8.64997 * 19 18 17 21 21 C 1.52998 * 117.50340 * 300.02122 * 19 18 17 22 22 O 1.33661 * 109.15650 * 359.76494 * 18 17 16 23 23 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 26 26 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 27 27 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 28 28 H 1.08000 * 126.27579 * 0.02562 * 16 15 13 29 29 H 1.09004 * 115.54574 * 154.35029 * 19 18 17 30 30 H 1.09007 * 117.49855 * 359.97438 * 20 19 18 31 31 H 1.08998 * 117.50578 * 145.01857 * 20 19 18 32 32 H 1.08996 * 117.50098 * 214.97959 * 21 19 18 33 33 H 1.09006 * 117.49346 * 359.97438 * 21 19 18 34 34 H 1.09004 * 113.77444 * 221.15143 * 23 12 11 35 35 H 1.09004 * 113.87147 * 89.76886 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3866 -6.4960 0.9218 15 6 -0.1938 -5.7112 2.4402 16 6 -0.8830 -4.7282 3.0863 17 7 -1.7304 -5.3224 3.9325 18 6 -1.5859 -6.6172 3.8396 19 6 -2.3554 -7.6411 4.6337 20 6 -3.5285 -7.1430 5.4801 21 6 -2.2322 -7.5916 6.1579 22 8 -0.6465 -6.8894 2.9286 23 6 2.1610 -3.7398 0.0582 24 1 -0.4850 0.8400 0.0004 25 1 -0.3471 -1.8018 -1.0246 26 1 1.3268 -2.4870 2.2200 27 1 -0.3218 -2.8255 1.5318 28 1 -0.7673 -3.6644 2.9397 29 1 -2.4512 -8.6221 4.1680 30 1 -3.7435 -6.0744 5.4630 31 1 -4.3964 -7.7960 5.5715 32 1 -2.2474 -8.5399 6.6951 33 1 -1.5942 -6.8186 6.5863 34 1 2.2032 -4.2939 -0.8796 35 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119261371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:21 Heat of formation + Delta-G solvation = -10.348868 kcal Electronic energy + Delta-G solvation = -21263.123005 eV Core-core repulsion = 17843.796897 eV Total energy + Delta-G solvation = -3419.326108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.65615 -41.28579 -39.15400 -38.25599 -36.21791 -35.74192 -34.15981 -32.24633 -30.07229 -27.44550 -27.25922 -25.49824 -24.49659 -23.29796 -22.16553 -21.69478 -20.65936 -19.42665 -18.54596 -18.31343 -18.09913 -17.42642 -16.99209 -16.34548 -16.02494 -15.85585 -15.63632 -15.03075 -14.99535 -14.43375 -14.11637 -13.84226 -13.44005 -13.38408 -12.88355 -12.82835 -12.77999 -12.45248 -12.25899 -12.24351 -12.16639 -11.90963 -11.58799 -11.54068 -11.16532 -10.67615 -10.36661 -10.11918 -9.71254 -8.27274 -6.43859 -0.42622 0.80519 1.13100 1.47369 1.53418 1.62568 1.86336 2.04503 2.41834 2.66405 2.86043 2.95808 3.26822 3.58377 3.67099 3.73396 3.92832 3.96418 4.03106 4.21329 4.34584 4.44991 4.54400 4.69053 4.76009 4.77366 4.85335 4.87824 4.96052 5.10592 5.18290 5.24318 5.73045 5.89721 6.28475 6.47660 6.62815 6.79949 7.29349 7.42133 8.79390 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.004183 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.581625 B = 6691.419032 C = 7325.415044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.223 3.777 10 O -0.585 6.585 11 C 0.081 3.919 12 N -0.615 5.615 13 C 0.609 3.391 14 O -0.585 6.585 15 C -0.118 4.118 16 C 0.037 3.963 17 N -0.500 5.500 18 C 0.249 3.751 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.138 4.138 22 O -0.186 6.186 23 C 0.121 3.879 24 H 0.276 0.724 25 H 0.389 0.611 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.208 0.792 29 H 0.157 0.843 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -8.156 11.668 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.095 0.905 9 C 0.181 3.819 10 O -0.397 6.397 11 C -0.041 4.041 12 N -0.348 5.348 13 C 0.399 3.601 14 O -0.468 6.468 15 C -0.173 4.173 16 C -0.105 4.105 17 N -0.228 5.228 18 C 0.044 3.956 19 C -0.130 4.130 20 C -0.169 4.169 21 C -0.175 4.175 22 O -0.072 6.072 23 C 0.000 4.000 24 H 0.086 0.914 25 H 0.244 0.756 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.225 0.775 29 H 0.175 0.825 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.455 -9.052 11.717 15.779 hybrid contribution 0.659 1.139 -0.771 1.525 sum -4.796 -7.913 10.946 14.333 Atomic orbital electron populations 1.69460 1.07065 1.28954 1.49985 1.25702 0.95718 1.02475 0.92598 0.85351 0.79040 0.78740 0.77555 1.19106 1.21024 1.20327 1.21703 0.94305 0.90282 1.52865 0.90523 1.20066 0.85868 0.91840 0.84080 1.86067 1.47489 1.49707 1.56438 1.24585 1.00670 0.76218 1.02622 1.49883 1.40049 1.03770 1.41088 1.16128 0.81069 0.82546 0.80374 1.90761 1.57544 1.39913 1.58622 1.22478 1.05526 0.83968 1.05326 1.24295 0.92023 1.01750 0.92444 1.70358 1.23864 1.05165 1.23451 1.26564 0.87641 0.92759 0.88610 1.20618 1.03189 0.96225 0.93012 1.23247 0.92263 1.03385 0.97980 1.23287 1.00082 1.05180 0.88990 1.84428 1.44563 1.33111 1.45131 1.23665 0.93968 0.91384 0.90956 0.91414 0.75650 0.87537 0.90475 0.77510 0.82503 0.88530 0.84176 0.84087 0.89139 0.91323 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.00 11.21 21.45 0.24 -43.76 16 2 C 0.04 1.70 5.40 84.65 0.46 2.15 16 3 Si 0.97 37.79 29.54 68.60 2.03 39.81 16 4 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -26.06 8.61 25.60 0.22 -25.84 16 8 H 0.08 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.22 10.14 1.40 -10.88 -0.02 10.13 16 10 O -0.59 -29.28 13.49 -148.98 -2.01 -31.29 16 11 C 0.08 3.24 6.54 86.44 0.57 3.81 16 12 N -0.62 -25.84 3.61 -844.35 -3.05 -28.89 16 13 C 0.61 26.96 8.02 86.46 0.69 27.65 16 14 O -0.59 -29.32 17.84 -0.59 -0.01 -29.33 16 15 C -0.12 -4.63 7.22 24.05 0.17 -4.45 16 16 C 0.04 1.31 10.97 83.97 0.92 2.23 16 17 N -0.50 -16.12 10.79 -302.88 -3.27 -19.39 16 18 C 0.25 7.40 7.87 88.29 0.69 8.09 16 19 C -0.11 -2.06 6.33 -11.54 -0.07 -2.13 16 20 C -0.13 -1.78 10.13 30.59 0.31 -1.47 16 21 C -0.14 -1.81 10.23 30.59 0.31 -1.49 16 22 O -0.19 -6.86 10.79 -3.28 -0.04 -6.89 16 23 C 0.12 5.04 8.23 86.49 0.71 5.75 16 24 H 0.28 12.62 8.31 -92.71 -0.77 11.85 16 25 H 0.39 19.67 6.61 -74.06 -0.49 19.18 16 26 H 0.11 3.94 8.09 -2.39 -0.02 3.92 16 27 H 0.08 3.07 6.29 -2.38 -0.01 3.05 16 28 H 0.21 6.74 5.08 -2.91 -0.01 6.72 16 29 H 0.16 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.10 1.68 7.87 -2.38 -0.02 1.66 16 31 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.12 4.25 8.09 -2.39 -0.02 4.23 16 Total: -1.00 -62.23 308.40 -0.48 -62.71 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.65 Total: 32.61 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 4.97 Total: 24.43 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -6.08 Total: -92.04 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -2.06 Total: -67.52 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.81 kcal Total: -62.23 -0.48 -62.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119261371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.361 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds