Wall clock time and date at job start Tue Mar 31 2020 01:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47223 * 33.17911 * 3 2 1 5 5 C 1.37092 * 119.99996 * 264.13627 * 4 3 2 6 6 H 1.08002 * 119.99893 * 197.43258 * 5 4 3 7 7 C 1.38946 * 119.99880 * 17.43815 * 5 4 3 8 8 N 1.31413 * 120.00088 * 21.51988 * 7 5 4 9 9 Si 1.86808 * 119.99958 * 201.52071 * 7 5 4 10 10 H 1.48501 * 109.47106 * 60.00038 * 9 7 5 11 11 H 1.48497 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46833 * 299.99720 * 9 7 5 13 13 C 1.34777 * 119.99812 * 84.13614 * 4 3 2 14 14 O 1.21293 * 120.00158 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00340 * 0.02562 * 13 4 3 16 16 O 1.42896 * 109.47408 * 180.02562 * 15 13 4 17 17 C 1.42895 * 113.99991 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46865 * 179.97438 * 17 16 15 19 19 C 1.41376 * 126.80441 * 359.71160 * 18 17 16 20 20 C 1.35454 * 103.98685 * 179.88881 * 19 18 17 21 21 C 1.50697 * 126.77626 * 180.09153 * 20 19 18 22 22 O 1.34034 * 106.44368 * 0.36451 * 20 19 18 23 23 N 1.20915 * 111.56880 * 359.75096 * 22 20 19 24 24 H 4.40640 * 5.51438 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47587 * 273.17867 * 3 2 1 26 26 H 1.08999 * 109.46980 * 153.17761 * 3 2 1 27 27 H 0.97008 * 119.99780 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47098 * 59.99378 * 15 13 4 29 29 H 1.09001 * 109.46490 * 300.00223 * 15 13 4 30 30 H 1.09001 * 109.47115 * 299.99056 * 17 16 15 31 31 H 1.08993 * 109.47621 * 59.99397 * 17 16 15 32 32 H 1.08007 * 128.00596 * 0.02562 * 19 18 17 33 33 H 1.09003 * 109.47312 * 180.29565 * 21 20 19 34 34 H 1.08998 * 109.47653 * 300.29906 * 21 20 19 35 35 H 1.09008 * 109.47343 * 60.30165 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1552 -0.7559 5 6 3.4782 -2.3084 -0.0990 6 1 4.0910 -3.0487 -0.5918 7 6 3.0377 -2.5249 1.2009 8 7 1.9860 -1.8804 1.6543 9 14 3.9404 -3.7323 2.3041 10 1 5.3489 -3.2924 2.4712 11 1 3.2761 -3.7822 3.6313 12 1 3.9134 -5.0825 1.6866 13 6 3.2470 -1.0847 -2.0971 14 8 3.6513 -2.0418 -2.7231 15 6 2.8701 0.1832 -2.8193 16 8 3.0744 0.0107 -4.2230 17 6 2.7457 1.1614 -5.0039 18 6 2.9987 0.8688 -6.4605 19 6 3.4895 -0.3382 -7.0092 20 6 3.5349 -0.0976 -8.3414 21 6 3.9851 -1.0534 -9.4160 22 8 3.1061 1.1605 -8.5146 23 7 2.8138 1.6793 -7.4623 24 1 -1.0499 -0.0004 0.0000 25 1 3.0094 -0.0562 1.0261 26 1 3.0088 0.9179 -0.4637 27 1 1.6783 -2.0318 2.5617 28 1 3.4902 1.0043 -2.4596 29 1 1.8209 0.4107 -2.6304 30 1 1.6942 1.4097 -4.8603 31 1 3.3639 2.0023 -4.6899 32 1 3.7627 -1.2434 -6.4871 33 1 3.9121 -0.5670 -10.3888 34 1 5.0190 -1.3456 -9.2325 35 1 3.3496 -1.9390 -9.4041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121188225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:25 Heat of formation + Delta-G solvation = 57.049573 kcal Electronic energy + Delta-G solvation = -20775.134813 eV Core-core repulsion = 17358.731321 eV Total energy + Delta-G solvation = -3416.403492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.90775 -38.92862 -37.38192 -35.14545 -34.14484 -33.34964 -32.19653 -31.28246 -28.64950 -27.81913 -26.76340 -26.15434 -24.13210 -22.83794 -20.37248 -19.25584 -17.95968 -17.70184 -17.36971 -16.70341 -16.40916 -15.86001 -15.66108 -14.92151 -14.38396 -14.19338 -14.05487 -13.67087 -13.49133 -13.41120 -12.94401 -12.59155 -12.38637 -12.21865 -11.89272 -11.60770 -11.54679 -11.09792 -11.00713 -10.57707 -10.38027 -10.18515 -9.48803 -9.43114 -9.30733 -9.23673 -8.96045 -8.43205 -7.92554 -6.37823 -3.90638 1.45255 2.25851 3.06828 3.14690 3.20854 3.23446 3.33994 3.64128 3.85396 3.97088 4.14842 4.40366 4.59978 4.97750 5.01993 5.07986 5.20407 5.24418 5.30668 5.32391 5.38227 5.41337 5.55081 5.65177 5.67808 5.79891 5.84022 6.16801 6.21068 6.67231 6.95640 7.21023 7.52531 7.99631 8.25047 8.37970 8.73336 9.08160 9.28444 9.83546 10.63099 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.003699 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.991098 B = 7567.165748 C = 8315.353600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.118 4.118 3 C 0.229 3.771 4 N -0.438 5.438 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.862 5.862 9 Si 0.924 3.076 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.453 3.547 14 O -0.563 6.563 15 C 0.054 3.946 16 O -0.354 6.354 17 C 0.140 3.860 18 C 0.024 3.976 19 C -0.200 4.200 20 C -0.046 4.046 21 C -0.071 4.071 22 O 0.097 5.903 23 N -0.367 5.367 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.269 0.731 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.180 0.820 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 6.534 -11.876 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.120 4.120 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.500 5.500 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.241 3.759 14 O -0.445 6.445 15 C -0.026 4.026 16 O -0.271 6.271 17 C 0.062 3.938 18 C -0.134 4.134 19 C -0.222 4.222 20 C -0.109 4.109 21 C -0.128 4.128 22 O 0.030 5.970 23 N -0.073 5.073 24 H 0.217 0.783 25 H 0.131 0.869 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.197 0.803 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.008 7.126 -12.169 14.138 hybrid contribution -0.001 -1.038 1.295 1.660 sum 1.008 6.088 -10.873 12.502 Atomic orbital electron populations 1.24303 0.95403 1.03613 1.04150 1.23178 0.94370 0.97215 0.97235 1.18305 0.84322 0.87242 0.99526 1.43626 1.56381 1.12473 1.03344 1.19624 1.30275 0.98311 0.96044 0.87704 1.25293 0.95107 0.98471 0.98341 1.70081 1.19600 1.42657 1.17685 0.86042 0.79589 0.80637 0.78739 1.19823 1.21027 1.19805 1.19605 0.85164 0.88713 0.82465 1.90544 1.49809 1.38633 1.65511 1.22333 1.00866 0.98410 0.80945 1.87959 1.87681 1.34576 1.16922 1.20300 1.00296 0.89231 0.84007 1.23203 1.01640 0.92073 0.96475 1.22513 1.06011 1.01212 0.92436 1.24513 1.02148 0.87109 0.97176 1.20305 1.02367 0.95493 0.94648 1.84778 1.61268 1.23558 1.27403 1.73740 1.20051 1.21554 0.91938 0.78304 0.86916 0.92078 0.92010 0.91550 0.91134 0.91033 0.91064 0.80307 0.90137 0.89171 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.57 10.88 -37.13 -0.40 -2.97 16 3 C 0.23 4.88 4.91 -6.83 -0.03 4.85 16 4 N -0.44 -10.87 2.60 -117.93 -0.31 -11.18 16 5 C -0.32 -8.55 9.33 -14.94 -0.14 -8.69 16 6 H 0.11 2.99 7.39 -52.49 -0.39 2.61 16 7 C 0.03 0.82 4.87 -17.47 -0.08 0.74 16 8 N -0.86 -22.16 9.48 55.50 0.53 -21.63 16 9 Si 0.92 20.11 29.60 -169.99 -5.03 15.08 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.45 11.07 7.64 -10.98 -0.08 10.99 16 14 O -0.56 -15.91 16.15 -14.36 -0.23 -16.14 16 15 C 0.05 1.02 5.02 36.01 0.18 1.20 16 16 O -0.35 -6.67 9.37 -55.14 -0.52 -7.18 16 17 C 0.14 2.08 6.56 36.01 0.24 2.32 16 18 C 0.02 0.37 7.28 -82.10 -0.60 -0.23 16 19 C -0.20 -2.89 10.45 -39.38 -0.41 -3.30 16 20 C -0.05 -0.54 7.49 -35.30 -0.26 -0.81 16 21 C -0.07 -0.50 10.45 36.00 0.38 -0.12 16 22 O 0.10 1.30 11.20 17.19 0.19 1.50 16 23 N -0.37 -5.57 12.07 33.42 0.40 -5.16 16 24 H 0.20 3.25 7.80 -54.10 -0.42 2.83 16 25 H 0.11 2.52 6.44 -51.93 -0.33 2.19 16 26 H 0.06 1.05 6.69 -51.93 -0.35 0.70 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.07 1.04 7.42 -51.93 -0.39 0.66 16 29 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.18 2.66 8.05 -52.48 -0.42 2.24 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -32.85 316.21 -4.79 -37.64 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.94 Total: 2.92 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.66 Total: -0.60 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.62 Total: -37.97 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.56 Total: -21.83 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.85 -4.79 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.691 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds