Wall clock time and date at job start Tue Mar 31 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47223 * 33.17911 * 3 2 1 5 5 C 1.37092 * 119.99996 * 264.13627 * 4 3 2 6 6 H 1.08002 * 119.99893 * 197.43258 * 5 4 3 7 7 C 1.38946 * 119.99880 * 17.43815 * 5 4 3 8 8 N 1.31413 * 120.00088 * 21.51988 * 7 5 4 9 9 Si 1.86808 * 119.99958 * 201.52071 * 7 5 4 10 10 H 1.48501 * 109.47106 * 60.00038 * 9 7 5 11 11 H 1.48497 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46833 * 299.99720 * 9 7 5 13 13 C 1.34777 * 119.99812 * 84.13614 * 4 3 2 14 14 O 1.21293 * 120.00158 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00340 * 0.02562 * 13 4 3 16 16 O 1.42896 * 109.47408 * 180.02562 * 15 13 4 17 17 C 1.42895 * 113.99991 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46865 * 179.97438 * 17 16 15 19 19 C 1.41376 * 126.80441 * 359.71160 * 18 17 16 20 20 C 1.35454 * 103.98685 * 179.88881 * 19 18 17 21 21 C 1.50697 * 126.77626 * 180.09153 * 20 19 18 22 22 O 1.34034 * 106.44368 * 0.36451 * 20 19 18 23 23 N 1.20915 * 111.56880 * 359.75096 * 22 20 19 24 24 H 4.40640 * 5.51438 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47587 * 273.17867 * 3 2 1 26 26 H 1.08999 * 109.46980 * 153.17761 * 3 2 1 27 27 H 0.97008 * 119.99780 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47098 * 59.99378 * 15 13 4 29 29 H 1.09001 * 109.46490 * 300.00223 * 15 13 4 30 30 H 1.09001 * 109.47115 * 299.99056 * 17 16 15 31 31 H 1.08993 * 109.47621 * 59.99397 * 17 16 15 32 32 H 1.08007 * 128.00596 * 0.02562 * 19 18 17 33 33 H 1.09003 * 109.47312 * 180.29565 * 21 20 19 34 34 H 1.08998 * 109.47653 * 300.29906 * 21 20 19 35 35 H 1.09008 * 109.47343 * 60.30165 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1552 -0.7559 5 6 3.4782 -2.3084 -0.0990 6 1 4.0910 -3.0487 -0.5918 7 6 3.0377 -2.5249 1.2009 8 7 1.9860 -1.8804 1.6543 9 14 3.9404 -3.7323 2.3041 10 1 5.3489 -3.2924 2.4712 11 1 3.2761 -3.7822 3.6313 12 1 3.9134 -5.0825 1.6866 13 6 3.2470 -1.0847 -2.0971 14 8 3.6513 -2.0418 -2.7231 15 6 2.8701 0.1832 -2.8193 16 8 3.0744 0.0107 -4.2230 17 6 2.7457 1.1614 -5.0039 18 6 2.9987 0.8688 -6.4605 19 6 3.4895 -0.3382 -7.0092 20 6 3.5349 -0.0976 -8.3414 21 6 3.9851 -1.0534 -9.4160 22 8 3.1061 1.1605 -8.5146 23 7 2.8138 1.6793 -7.4623 24 1 -1.0499 -0.0004 0.0000 25 1 3.0094 -0.0562 1.0261 26 1 3.0088 0.9179 -0.4637 27 1 1.6783 -2.0318 2.5617 28 1 3.4902 1.0043 -2.4596 29 1 1.8209 0.4107 -2.6304 30 1 1.6942 1.4097 -4.8603 31 1 3.3639 2.0023 -4.6899 32 1 3.7627 -1.2434 -6.4871 33 1 3.9121 -0.5670 -10.3888 34 1 5.0190 -1.3456 -9.2325 35 1 3.3496 -1.9390 -9.4041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121188225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:24 Heat of formation + Delta-G solvation = 36.699069 kcal Electronic energy + Delta-G solvation = -20776.017277 eV Core-core repulsion = 17358.731321 eV Total energy + Delta-G solvation = -3417.285956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.98475 -40.67944 -38.84429 -37.02645 -35.26925 -34.28955 -34.04722 -33.05349 -30.11772 -28.62980 -28.33656 -27.67212 -25.93968 -23.95110 -21.56265 -20.89283 -19.72513 -18.78787 -18.62638 -18.37114 -17.93429 -17.24145 -17.11958 -16.66568 -15.91557 -15.73112 -15.61992 -14.90563 -14.48958 -14.46531 -14.13796 -13.97801 -13.87254 -13.54808 -13.42705 -13.22527 -12.86858 -12.73894 -12.49444 -12.17326 -12.14989 -11.42868 -11.18711 -11.10173 -10.71446 -10.61131 -10.32395 -10.26807 -9.86211 -8.33440 -5.94425 0.44169 1.15155 1.37919 1.43807 1.52653 1.77538 1.95346 2.16022 2.26333 2.32218 2.39414 3.02896 3.12173 3.47760 3.69819 3.85539 3.93246 4.06770 4.12740 4.22147 4.26315 4.36571 4.41739 4.47239 4.66683 4.73458 4.89304 4.96401 4.97900 5.24137 5.41463 5.46753 5.83850 6.10103 6.44821 7.12297 7.13174 7.19781 7.36890 7.93855 8.64783 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.003699 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.991098 B = 7567.165748 C = 8315.353600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.158 4.158 3 C 0.229 3.771 4 N -0.446 5.446 5 C -0.355 4.355 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.869 5.869 9 Si 0.984 3.016 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.437 3.563 14 O -0.617 6.617 15 C 0.069 3.931 16 O -0.381 6.381 17 C 0.138 3.862 18 C 0.007 3.993 19 C -0.236 4.236 20 C -0.020 4.020 21 C -0.071 4.071 22 O 0.097 5.903 23 N -0.382 5.382 24 H 0.232 0.768 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.273 0.727 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 7.514 -12.128 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.160 4.160 3 C 0.107 3.893 4 N -0.165 5.165 5 C -0.482 4.482 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.506 5.506 9 Si 0.808 3.192 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.206 1.206 13 C 0.226 3.774 14 O -0.503 6.503 15 C -0.010 4.010 16 O -0.299 6.299 17 C 0.061 3.939 18 C -0.150 4.150 19 C -0.258 4.258 20 C -0.084 4.084 21 C -0.128 4.128 22 O 0.031 5.969 23 N -0.089 5.089 24 H 0.249 0.751 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.184 0.816 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.543 8.153 -12.406 14.855 hybrid contribution 0.089 -1.364 1.319 1.899 sum 0.632 6.790 -11.087 13.016 Atomic orbital electron populations 1.25161 0.96381 1.01940 1.02497 1.23441 0.94999 0.98746 0.98772 1.18423 0.84619 0.87504 0.98722 1.43822 1.55983 1.12778 1.03947 1.19532 1.31864 0.99499 0.97335 0.90712 1.25951 0.95333 0.99884 0.98543 1.70166 1.19604 1.42909 1.17900 0.85142 0.78855 0.78054 0.77136 1.19055 1.19685 1.20627 1.20593 0.84093 0.90194 0.82473 1.90496 1.52127 1.41067 1.66634 1.22143 1.02158 0.95920 0.80826 1.87922 1.88121 1.36870 1.17012 1.20487 1.01635 0.88439 0.83370 1.23412 1.02086 0.92611 0.96930 1.22525 1.08452 1.01016 0.93816 1.25216 0.99195 0.86546 0.97430 1.20594 1.03250 0.94877 0.94118 1.84748 1.61077 1.24220 1.26867 1.73724 1.21045 1.22013 0.92127 0.75099 0.88492 0.87897 0.91651 0.87925 0.89681 0.89542 0.88862 0.81577 0.87808 0.87670 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.18 19.25 74.32 1.43 -7.75 16 2 C -0.16 -6.64 10.88 31.12 0.34 -6.30 16 3 C 0.23 9.60 4.91 84.57 0.42 10.02 16 4 N -0.45 -22.47 2.60 -645.41 -1.68 -24.15 16 5 C -0.36 -19.83 9.33 84.04 0.78 -19.05 16 6 H 0.07 4.52 7.39 -2.91 -0.02 4.50 16 7 C 0.01 0.35 4.87 84.93 0.41 0.77 16 8 N -0.87 -44.22 9.48 21.66 0.21 -44.01 16 9 Si 0.98 41.32 29.60 68.60 2.03 43.35 16 10 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.44 21.77 7.64 87.66 0.67 22.44 16 14 O -0.62 -36.47 16.15 15.97 0.26 -36.21 16 15 C 0.07 2.52 5.02 71.24 0.36 2.88 16 16 O -0.38 -14.29 9.37 -129.94 -1.22 -15.50 16 17 C 0.14 3.96 6.56 71.24 0.47 4.43 16 18 C 0.01 0.22 7.28 43.58 0.32 0.53 16 19 C -0.24 -6.86 10.45 22.40 0.23 -6.63 16 20 C -0.02 -0.46 7.49 25.04 0.19 -0.27 16 21 C -0.07 -0.84 10.45 71.23 0.74 -0.09 16 22 O 0.10 2.49 11.20 71.69 0.80 3.30 16 23 N -0.38 -11.30 12.07 -49.56 -0.60 -11.90 16 24 H 0.23 6.81 7.80 -4.42 -0.03 6.77 16 25 H 0.10 4.32 6.44 -2.39 -0.02 4.30 16 26 H 0.10 3.33 6.69 -2.39 -0.02 3.31 16 27 H 0.27 13.19 8.31 -92.70 -0.77 12.42 16 28 H 0.10 2.97 7.42 -2.39 -0.02 2.95 16 29 H 0.09 2.86 7.51 -2.39 -0.02 2.84 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.17 5.20 8.05 -2.91 -0.02 5.18 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -73.58 316.21 7.27 -66.31 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.11 Total: 17.84 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.36 Total: 0.97 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.07 Total: -80.06 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.16 Total: -48.42 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -73.58 7.27 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.010 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds