Wall clock time and date at job start Tue Mar 31 2020 01:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32155 * 120.53982 * 2 1 4 4 C 1.31855 * 120.97263 * 180.27511 * 3 2 1 5 5 N 1.31885 * 122.10890 * 359.97438 * 4 3 2 6 6 C 1.32121 * 120.97240 * 359.97438 * 5 4 3 7 7 C 1.39983 * 120.54238 * 180.27582 * 2 1 3 8 8 C 1.47712 * 120.94071 * 359.69897 * 7 2 1 9 9 O 1.21469 * 120.00321 * 354.19481 * 8 7 2 10 10 O 1.34715 * 119.99800 * 174.18841 * 8 7 2 11 11 C 1.45194 * 117.00169 * 184.92101 * 10 8 7 12 12 C 1.53003 * 109.47265 * 175.48506 * 11 10 8 13 13 C 1.50703 * 112.99569 * 295.75224 * 12 11 10 14 14 H 1.07999 * 119.99829 * 121.30451 * 13 12 11 15 15 C 1.37874 * 120.00053 * 301.30178 * 13 12 11 16 16 N 1.31513 * 120.00098 * 343.29055 * 15 13 12 17 17 Si 1.86804 * 119.99892 * 163.29403 * 15 13 12 18 18 H 1.48491 * 109.47122 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47102 * 120.00033 * 17 15 13 20 20 H 1.48496 * 109.46869 * 239.99760 * 17 15 13 21 21 C 1.54028 * 113.81779 * 163.76511 * 12 11 10 22 22 O 1.44171 * 85.52075 * 223.19547 * 21 12 11 23 23 C 1.44179 * 93.33863 * 24.19449 * 22 21 12 24 24 H 1.09002 * 109.47231 * 261.51610 * 1 2 3 25 25 H 1.08997 * 109.46869 * 21.51484 * 1 2 3 26 26 H 1.08997 * 109.47126 * 141.51473 * 1 2 3 27 27 H 1.08003 * 118.94289 * 180.02562 * 4 3 2 28 28 H 1.08004 * 120.53825 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.47069 * 295.48251 * 11 10 8 30 30 H 1.08997 * 109.47244 * 55.48221 * 11 10 8 31 31 H 0.97001 * 119.99775 * 185.02584 * 16 15 13 32 32 H 1.09003 * 113.86838 * 337.34509 * 21 12 11 33 33 H 1.09006 * 113.86320 * 109.04277 * 21 12 11 34 34 H 1.09001 * 113.86510 * 221.66287 * 23 22 21 35 35 H 1.08992 * 113.98487 * 89.96542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4970 1.1482 -0.0054 5 7 4.2065 0.0364 -0.0106 6 6 3.6172 -1.1461 -0.0100 7 6 2.2184 -1.2056 -0.0058 8 6 1.5132 -2.5035 -0.0054 9 8 0.3041 -2.5378 0.1064 10 8 2.2110 -3.6492 -0.1291 11 6 1.4461 -4.8791 -0.2313 12 6 2.3971 -6.0523 -0.4769 13 6 3.1236 -5.9555 -1.7937 14 1 4.2032 -5.9345 -1.8146 15 6 2.4100 -5.8938 -2.9718 16 7 1.1425 -6.2438 -2.9919 17 14 3.2436 -5.3131 -4.5394 18 1 4.6617 -4.9798 -4.2516 19 1 3.1851 -6.3907 -5.5596 20 1 2.5465 -4.1068 -5.0531 21 6 1.7648 -7.4316 -0.2121 22 8 3.0092 -7.7507 0.4423 23 6 3.3155 -6.3692 0.7184 24 1 -0.3634 -0.1516 1.0164 25 1 -0.3633 0.9560 -0.3769 26 1 -0.3633 -0.8044 -0.6395 27 1 4.0126 2.0972 -0.0048 28 1 4.2051 -2.0522 -0.0138 29 1 0.8977 -5.0440 0.6962 30 1 0.7428 -4.8018 -1.0604 31 1 0.6600 -6.2704 -3.8330 32 1 0.9076 -7.4020 0.4606 33 1 1.5798 -8.0127 -1.1156 34 1 4.3607 -6.1076 0.5530 35 1 2.9331 -6.0132 1.6749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123060674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:37 Heat of formation + Delta-G solvation = -45.231422 kcal Electronic energy + Delta-G solvation = -21744.511509 eV Core-core repulsion = 18323.672780 eV Total energy + Delta-G solvation = -3420.838729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31327 -39.76657 -39.02217 -36.05976 -34.39382 -33.08178 -32.74256 -30.09356 -28.78942 -25.92674 -25.44359 -25.06126 -24.13281 -22.94834 -21.07341 -19.08812 -18.08675 -17.31060 -16.88508 -16.52223 -16.09277 -15.79035 -15.10937 -14.75982 -14.56097 -14.41788 -14.19306 -13.87011 -13.23602 -13.07022 -12.77941 -12.52398 -12.36012 -12.08568 -11.81220 -11.54329 -11.09391 -10.85285 -10.68173 -10.53354 -10.17340 -10.07714 -9.75053 -9.64743 -9.45067 -9.42184 -9.18575 -8.81442 -8.35644 -6.27928 -4.27795 0.31583 0.91455 2.71930 3.06396 3.18070 3.28246 3.32521 3.68045 3.86302 3.99126 4.25619 4.30810 4.71800 4.82209 4.98196 5.04002 5.25124 5.49925 5.59826 5.70952 5.90367 5.94758 6.03084 6.10651 6.21012 6.24453 6.29919 6.43681 6.73559 6.86479 7.02955 7.18068 7.22559 7.28935 7.72187 7.86005 8.08949 8.19005 8.68742 9.34098 10.78703 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.005948 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.569268 B = 4706.150544 C = 5180.781822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.235 3.765 3 N -0.531 5.531 4 C 0.318 3.682 5 N -0.533 5.533 6 C 0.212 3.788 7 C -0.227 4.227 8 C 0.509 3.491 9 O -0.506 6.506 10 O -0.330 6.330 11 C 0.083 3.917 12 C 0.032 3.968 13 C -0.495 4.495 14 H 0.069 0.931 15 C 0.071 3.929 16 N -0.882 5.882 17 Si 0.891 3.109 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.049 3.951 22 O -0.388 6.388 23 C 0.031 3.969 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.201 0.799 28 H 0.189 0.811 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 10.685 5.610 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 N -0.246 5.246 4 C 0.031 3.969 5 N -0.247 5.247 6 C 0.046 3.954 7 C -0.233 4.233 8 C 0.352 3.648 9 O -0.397 6.397 10 O -0.245 6.245 11 C 0.009 3.991 12 C 0.032 3.968 13 C -0.532 4.532 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.518 5.518 17 Si 0.718 3.282 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.028 4.028 22 O -0.307 6.307 23 C -0.046 4.046 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.217 0.783 28 H 0.205 0.795 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.749 11.291 5.583 12.618 hybrid contribution -0.266 -0.360 -0.951 1.051 sum 0.483 10.931 4.632 11.882 Atomic orbital electron populations 1.21097 0.86550 1.04413 1.04853 1.22004 0.98193 0.86423 0.84487 1.68441 1.10354 1.29299 1.16475 1.25251 0.86796 0.97471 0.87384 1.68548 1.41419 0.98948 1.15778 1.23860 0.90990 0.96851 0.83722 1.20970 0.96518 0.93647 1.12145 1.20519 0.85605 0.84889 0.73750 1.90761 1.14861 1.87986 1.46071 1.86518 1.41299 1.15225 1.81412 1.23583 0.95348 0.79836 1.00299 1.21127 0.91756 0.89007 0.94945 1.20591 0.93098 1.51176 0.88382 0.91283 1.24964 0.94821 0.94319 0.99201 1.69908 1.09481 1.45291 1.27160 0.86534 0.80082 0.78766 0.82784 1.19314 1.20867 1.20866 1.23978 0.85673 0.97759 0.95408 1.89499 1.37331 1.25276 1.78625 1.24039 1.00924 0.82481 0.97199 0.88981 0.90442 0.87646 0.78266 0.79460 0.93960 0.89208 0.92409 0.93502 0.88264 0.90305 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.90 36.01 0.32 -1.11 16 2 C 0.23 3.37 6.87 -81.80 -0.56 2.80 16 3 N -0.53 -7.07 10.36 -10.46 -0.11 -7.17 16 4 C 0.32 3.75 12.27 -92.02 -1.13 2.62 16 5 N -0.53 -7.16 10.42 -14.23 -0.15 -7.31 16 6 C 0.21 3.02 10.90 -16.76 -0.18 2.84 16 7 C -0.23 -3.54 5.91 -104.71 -0.62 -4.16 16 8 C 0.51 9.31 7.85 34.60 0.27 9.58 16 9 O -0.51 -9.82 13.36 -19.24 -0.26 -10.07 16 10 O -0.33 -6.59 9.39 -40.53 -0.38 -6.97 16 11 C 0.08 1.80 4.63 37.16 0.17 1.97 16 12 C 0.03 0.74 0.58 -154.58 -0.09 0.65 16 13 C -0.50 -12.57 8.14 -34.44 -0.28 -12.85 16 14 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 15 C 0.07 1.81 5.13 -17.82 -0.09 1.72 16 16 N -0.88 -23.10 11.51 55.43 0.64 -22.46 16 17 Si 0.89 20.28 29.57 -169.99 -5.03 15.25 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.05 1.11 7.98 37.60 0.30 1.41 16 22 O -0.39 -8.93 12.40 -35.23 -0.44 -9.37 16 23 C 0.03 0.63 8.30 37.61 0.31 0.94 16 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.11 1.52 6.11 -51.93 -0.32 1.20 16 27 H 0.20 1.52 8.06 -52.48 -0.42 1.10 16 28 H 0.19 2.48 7.73 -52.48 -0.41 2.07 16 29 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.09 2.19 6.86 -51.93 -0.36 1.84 16 31 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 32 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.10 2.43 7.65 -51.93 -0.40 2.03 16 34 H 0.08 1.56 8.08 -51.93 -0.42 1.14 16 35 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -28.44 307.01 -6.64 -35.09 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.97 Total: 1.97 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.58 Total: 6.43 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.38 Total: -36.95 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.07 Total: -26.41 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.44 -6.64 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.146 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds