Wall clock time and date at job start Tue Mar 31 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38572 * 119.96283 * 2 1 4 4 C 1.38823 * 118.07560 * 179.72598 * 3 2 1 5 5 C 1.39759 * 117.89305 * 0.53058 * 4 3 2 6 6 C 1.48051 * 120.18607 * 179.76313 * 5 4 3 7 7 O 1.21430 * 119.99982 * 359.71864 * 6 5 4 8 8 O 1.34676 * 120.00157 * 179.72035 * 6 5 4 9 9 C 1.45206 * 117.00293 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47329 * 180.02562 * 9 8 6 11 11 C 1.50699 * 113.00224 * 53.51706 * 10 9 8 12 12 H 1.08001 * 120.00270 * 245.39841 * 11 10 9 13 13 C 1.37886 * 120.00085 * 65.39344 * 11 10 9 14 14 N 1.31511 * 119.99533 * 6.61372 * 13 11 10 15 15 Si 1.86793 * 120.00337 * 186.61360 * 13 11 10 16 16 H 1.48497 * 109.47391 * 89.99912 * 15 13 11 17 17 H 1.48499 * 109.47129 * 210.00600 * 15 13 11 18 18 H 1.48513 * 109.47072 * 329.99973 * 15 13 11 19 19 C 1.54036 * 113.81537 * 281.53562 * 10 9 8 20 20 O 1.44180 * 85.51459 * 223.19478 * 19 10 9 21 21 C 1.44175 * 93.33997 * 24.18993 * 20 19 10 22 22 N 1.32823 * 119.62705 * 359.48077 * 5 4 3 23 23 N 1.28345 * 122.02201 * 0.25727 * 22 5 4 24 24 H 1.08998 * 109.47262 * 269.97473 * 1 2 3 25 25 H 1.08999 * 109.47124 * 29.97763 * 1 2 3 26 26 H 1.09003 * 109.46772 * 149.98021 * 1 2 3 27 27 H 1.08002 * 120.95943 * 359.97438 * 3 2 1 28 28 H 1.07996 * 121.05346 * 180.26888 * 4 3 2 29 29 H 1.09004 * 109.46578 * 300.00020 * 9 8 6 30 30 H 1.08998 * 109.46880 * 59.99781 * 9 8 6 31 31 H 0.97002 * 119.99876 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.86007 * 337.33974 * 19 10 9 33 33 H 1.08998 * 113.86557 * 109.04741 * 19 10 9 34 34 H 1.08998 * 113.86721 * 221.65519 * 21 20 19 35 35 H 1.09004 * 113.98313 * 89.97217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5865 1.1548 0.0059 5 6 4.1993 -0.1012 0.0000 6 6 5.6759 -0.2091 0.0005 7 8 6.3581 0.7955 0.0009 8 8 6.2626 -1.4214 0.0005 9 6 7.7143 -1.4513 0.0005 10 6 8.1945 -2.9039 -0.0002 11 6 7.5962 -3.7215 -1.1159 12 1 6.9311 -4.5412 -0.8879 13 6 7.8980 -3.4228 -2.4278 14 7 8.8059 -2.5120 -2.7026 15 14 7.0172 -4.3119 -3.8145 16 1 5.7917 -3.5597 -4.1853 17 1 7.9164 -4.4052 -4.9926 18 1 6.6433 -5.6781 -3.3679 19 6 8.1222 -3.5836 1.3803 20 8 9.4240 -4.1148 1.0611 21 6 9.7218 -3.0542 0.1310 22 7 3.4496 -1.1976 -0.0004 23 7 2.1672 -1.1452 -0.0004 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6742 2.1444 -0.0004 28 1 4.1737 2.0611 0.0105 29 1 8.0880 -0.9450 -0.8896 30 1 8.0881 -0.9450 0.8904 31 1 9.0185 -2.3022 -3.6255 32 1 8.1241 -2.8845 2.2165 33 1 7.3433 -4.3421 1.4581 34 1 10.2117 -3.3929 -0.7819 35 1 10.2125 -2.1926 0.5838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123167297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:37 Heat of formation + Delta-G solvation = -34.781633 kcal Electronic energy + Delta-G solvation = -21398.418923 eV Core-core repulsion = 17978.033331 eV Total energy + Delta-G solvation = -3420.385592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25535 -39.72083 -38.96809 -35.87156 -34.21734 -33.21902 -32.86550 -30.04510 -28.79440 -25.69794 -25.33864 -25.03940 -24.30881 -23.29104 -21.17434 -19.02450 -18.20375 -17.38467 -16.55702 -16.03027 -15.87005 -15.74903 -15.17393 -14.79685 -14.71282 -14.32827 -14.21981 -13.93858 -13.44283 -13.23633 -12.67643 -12.65842 -12.30359 -11.99754 -11.67397 -11.39122 -10.96227 -10.72780 -10.46761 -10.45201 -10.40539 -9.97031 -9.89421 -9.81249 -9.61520 -9.39819 -9.04863 -8.72943 -8.27445 -6.14518 -4.15784 0.30636 0.61954 2.57562 2.94308 3.31459 3.37425 3.42316 3.56766 3.80636 4.19183 4.37290 4.39113 4.56425 4.75012 4.91006 4.97453 5.15252 5.21186 5.21521 5.50025 5.57706 5.77622 5.89055 5.98028 6.02034 6.19881 6.30131 6.39501 6.52356 6.93373 7.03733 7.24424 7.30677 7.38007 7.83697 8.12663 8.27187 8.53730 8.82076 9.47900 10.94113 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.005422 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.161807 B = 5163.095372 C = 5818.403626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.081 3.919 3 C -0.128 4.128 4 C -0.062 4.062 5 C 0.039 3.961 6 C 0.516 3.484 7 O -0.509 6.509 8 O -0.299 6.299 9 C 0.079 3.921 10 C 0.033 3.967 11 C -0.480 4.480 12 H 0.068 0.932 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.271 1.271 19 C 0.029 3.971 20 O -0.388 6.388 21 C 0.051 3.949 22 N -0.166 5.166 23 N -0.243 5.243 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.171 9.367 5.021 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.090 4.090 5 C -0.105 4.105 6 C 0.357 3.643 7 O -0.399 6.399 8 O -0.212 6.212 9 C 0.006 3.994 10 C 0.032 3.968 11 C -0.518 4.518 12 H 0.086 0.914 13 C -0.136 4.136 14 N -0.530 5.530 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.195 1.195 19 C -0.048 4.048 20 O -0.307 6.307 21 C -0.026 4.026 22 N -0.013 5.013 23 N -0.088 5.088 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.182 0.818 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.698 7.821 4.943 15.711 hybrid contribution -0.280 1.590 -0.920 1.858 sum -12.978 9.411 4.022 16.528 Atomic orbital electron populations 1.20738 0.87092 1.04373 1.03861 1.23204 0.99454 0.90695 0.92834 1.22256 0.93948 1.00151 0.99317 1.22437 0.95216 0.98837 0.92518 1.21995 0.94235 0.91995 1.02296 1.20379 0.86765 0.83376 0.73738 1.90803 1.64219 1.38156 1.46689 1.86730 1.26044 1.27996 1.80414 1.23633 0.73279 1.01706 1.00830 1.21131 0.92475 0.89971 0.93225 1.20575 1.27358 1.14938 0.88919 0.91398 1.24938 0.94608 0.95227 0.98824 1.69885 1.30744 1.32670 1.19687 0.86476 0.79497 0.80277 0.81186 1.20585 1.21282 1.19548 1.24100 0.86219 0.97186 0.97337 1.89495 1.33263 1.45109 1.62808 1.23913 0.98262 0.88365 0.92055 1.73585 0.98953 1.25458 1.03300 1.73288 1.01193 1.24342 1.09993 0.89472 0.90045 0.89553 0.82457 0.81842 0.89368 0.94074 0.92638 0.92879 0.90174 0.88148 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.19 36.00 0.37 -0.31 16 2 C 0.08 0.90 6.87 -82.32 -0.57 0.33 16 3 C -0.13 -1.22 9.86 -39.24 -0.39 -1.60 16 4 C -0.06 -0.77 9.73 -38.80 -0.38 -1.15 16 5 C 0.04 0.68 6.83 -82.85 -0.57 0.11 16 6 C 0.52 10.54 7.95 34.76 0.28 10.82 16 7 O -0.51 -10.69 16.18 -19.21 -0.31 -11.00 16 8 O -0.30 -6.91 9.66 -40.43 -0.39 -7.30 16 9 C 0.08 1.85 4.68 37.16 0.17 2.02 16 10 C 0.03 0.80 0.62 -154.59 -0.10 0.70 16 11 C -0.48 -13.03 7.92 -34.44 -0.27 -13.30 16 12 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 13 C 0.07 1.79 5.25 -17.82 -0.09 1.70 16 14 N -0.89 -24.43 11.31 55.43 0.63 -23.81 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.03 0.63 8.35 37.61 0.31 0.95 16 20 O -0.39 -9.34 12.40 -35.23 -0.44 -9.78 16 21 C 0.05 1.21 7.91 37.60 0.30 1.51 16 22 N -0.17 -3.09 11.31 33.31 0.38 -2.71 16 23 N -0.24 -3.83 11.43 33.63 0.38 -3.44 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.16 1.73 7.72 -52.49 -0.41 1.32 16 29 H 0.09 2.26 7.21 -51.93 -0.37 1.89 16 30 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 34 H 0.10 2.56 7.36 -51.93 -0.38 2.18 16 35 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -31.80 312.43 -5.06 -36.86 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.07 Total: -1.89 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -0.93 Total: 1.77 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 1.39 Total: -29.96 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.14 Total: -28.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.80 -5.06 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123167297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.081 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds