Wall clock time and date at job start Tue Mar 31 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38572 * 119.96283 * 2 1 4 4 C 1.38823 * 118.07560 * 179.72598 * 3 2 1 5 5 C 1.39759 * 117.89305 * 0.53058 * 4 3 2 6 6 C 1.48051 * 120.18607 * 179.76313 * 5 4 3 7 7 O 1.21430 * 119.99982 * 359.71864 * 6 5 4 8 8 O 1.34676 * 120.00157 * 179.72035 * 6 5 4 9 9 C 1.45206 * 117.00293 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47329 * 180.02562 * 9 8 6 11 11 C 1.50699 * 113.00224 * 53.51706 * 10 9 8 12 12 H 1.08001 * 120.00270 * 245.39841 * 11 10 9 13 13 C 1.37886 * 120.00085 * 65.39344 * 11 10 9 14 14 N 1.31511 * 119.99533 * 6.61372 * 13 11 10 15 15 Si 1.86793 * 120.00337 * 186.61360 * 13 11 10 16 16 H 1.48497 * 109.47391 * 89.99912 * 15 13 11 17 17 H 1.48499 * 109.47129 * 210.00600 * 15 13 11 18 18 H 1.48513 * 109.47072 * 329.99973 * 15 13 11 19 19 C 1.54036 * 113.81537 * 281.53562 * 10 9 8 20 20 O 1.44180 * 85.51459 * 223.19478 * 19 10 9 21 21 C 1.44175 * 93.33997 * 24.18993 * 20 19 10 22 22 N 1.32823 * 119.62705 * 359.48077 * 5 4 3 23 23 N 1.28345 * 122.02201 * 0.25727 * 22 5 4 24 24 H 1.08998 * 109.47262 * 269.97473 * 1 2 3 25 25 H 1.08999 * 109.47124 * 29.97763 * 1 2 3 26 26 H 1.09003 * 109.46772 * 149.98021 * 1 2 3 27 27 H 1.08002 * 120.95943 * 359.97438 * 3 2 1 28 28 H 1.07996 * 121.05346 * 180.26888 * 4 3 2 29 29 H 1.09004 * 109.46578 * 300.00020 * 9 8 6 30 30 H 1.08998 * 109.46880 * 59.99781 * 9 8 6 31 31 H 0.97002 * 119.99876 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.86007 * 337.33974 * 19 10 9 33 33 H 1.08998 * 113.86557 * 109.04741 * 19 10 9 34 34 H 1.08998 * 113.86721 * 221.65519 * 21 20 19 35 35 H 1.09004 * 113.98313 * 89.97217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5865 1.1548 0.0059 5 6 4.1993 -0.1012 0.0000 6 6 5.6759 -0.2091 0.0005 7 8 6.3581 0.7955 0.0009 8 8 6.2626 -1.4214 0.0005 9 6 7.7143 -1.4513 0.0005 10 6 8.1945 -2.9039 -0.0002 11 6 7.5962 -3.7215 -1.1159 12 1 6.9311 -4.5412 -0.8879 13 6 7.8980 -3.4228 -2.4278 14 7 8.8059 -2.5120 -2.7026 15 14 7.0172 -4.3119 -3.8145 16 1 5.7917 -3.5597 -4.1853 17 1 7.9164 -4.4052 -4.9926 18 1 6.6433 -5.6781 -3.3679 19 6 8.1222 -3.5836 1.3803 20 8 9.4240 -4.1148 1.0611 21 6 9.7218 -3.0542 0.1310 22 7 3.4496 -1.1976 -0.0004 23 7 2.1672 -1.1452 -0.0004 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6742 2.1444 -0.0004 28 1 4.1737 2.0611 0.0105 29 1 8.0880 -0.9450 -0.8896 30 1 8.0881 -0.9450 0.8904 31 1 9.0185 -2.3022 -3.6255 32 1 8.1241 -2.8845 2.2165 33 1 7.3433 -4.3421 1.4581 34 1 10.2117 -3.3929 -0.7819 35 1 10.2125 -2.1926 0.5838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123167297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:37 Heat of formation + Delta-G solvation = -56.748114 kcal Electronic energy + Delta-G solvation = -21399.371461 eV Core-core repulsion = 17978.033331 eV Total energy + Delta-G solvation = -3421.338130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.37820 -41.39701 -40.69506 -37.54761 -35.17656 -34.87268 -34.26376 -31.90638 -29.70878 -27.43584 -27.14599 -26.57252 -25.84567 -24.38534 -22.56728 -20.93807 -19.59409 -18.71006 -18.19420 -17.67829 -17.52715 -16.89459 -16.71009 -16.32411 -16.24423 -16.13377 -15.98107 -15.13865 -14.54827 -14.25459 -14.12181 -13.88426 -13.67095 -13.52743 -13.20284 -12.92942 -12.67390 -12.57934 -12.38638 -11.98342 -11.83281 -11.43580 -11.42965 -11.32703 -10.95822 -10.88230 -10.83145 -10.72176 -10.21669 -8.21386 -6.27250 -0.78506 -0.32285 1.20699 1.36683 1.39305 1.47873 1.51397 2.38500 2.42006 2.74053 2.98685 3.20996 3.25927 3.46818 3.64998 3.74854 3.94786 4.06153 4.20951 4.44321 4.45898 4.49578 4.55035 4.61958 4.72548 4.78686 4.92922 5.01573 5.10859 5.19673 5.30795 5.42273 5.47311 5.52126 5.71701 6.20723 6.57758 6.70807 7.37612 7.45461 8.85940 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.005422 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.161807 B = 5163.095372 C = 5818.403626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.084 3.916 3 C -0.098 4.098 4 C -0.062 4.062 5 C 0.011 3.989 6 C 0.513 3.487 7 O -0.523 6.523 8 O -0.321 6.321 9 C 0.090 3.910 10 C 0.015 3.985 11 C -0.497 4.497 12 H 0.053 0.947 13 C 0.028 3.972 14 N -0.908 5.908 15 Si 0.946 3.054 16 H -0.284 1.284 17 H -0.278 1.278 18 H -0.269 1.269 19 C 0.037 3.963 20 O -0.402 6.402 21 C 0.057 3.943 22 N -0.214 5.214 23 N -0.279 5.279 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.217 0.783 28 H 0.183 0.817 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.264 0.736 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.586 11.306 5.500 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.058 4.058 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.134 4.134 6 C 0.356 3.644 7 O -0.413 6.413 8 O -0.234 6.234 9 C 0.016 3.984 10 C 0.014 3.986 11 C -0.534 4.534 12 H 0.071 0.929 13 C -0.172 4.172 14 N -0.546 5.546 15 Si 0.772 3.228 16 H -0.211 1.211 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.039 4.039 20 O -0.321 6.321 21 C -0.020 4.020 22 N -0.061 5.061 23 N -0.124 5.124 24 H 0.125 0.875 25 H 0.137 0.863 26 H 0.098 0.902 27 H 0.234 0.766 28 H 0.200 0.800 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.117 9.751 5.427 18.790 hybrid contribution 0.295 1.065 -1.035 1.514 sum -14.822 10.816 4.391 18.867 Atomic orbital electron populations 1.20962 0.83512 1.05899 1.05485 1.24037 1.01615 0.90088 0.90101 1.22892 0.92430 1.01809 0.95520 1.22731 0.96855 0.97407 0.92021 1.21812 0.92180 0.93990 1.05432 1.20975 0.88352 0.82317 0.72765 1.90766 1.65019 1.38061 1.47438 1.86721 1.25579 1.29965 1.81163 1.23331 0.74074 1.00705 1.00284 1.21200 0.92961 0.90530 0.93877 1.20747 1.27393 1.15028 0.90266 0.92895 1.25507 0.95213 0.96009 1.00511 1.69958 1.31364 1.33389 1.19908 0.85729 0.78450 0.79306 0.79286 1.21073 1.20306 1.19360 1.24177 0.85390 0.97287 0.97045 1.89465 1.34097 1.45696 1.62848 1.23827 0.97790 0.88868 0.91478 1.73444 1.00517 1.26893 1.05196 1.73184 1.00170 1.27136 1.11909 0.87487 0.86339 0.90226 0.76630 0.79982 0.92232 0.92129 0.92651 0.89793 0.90167 0.90501 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.19 71.24 0.73 -0.18 16 2 C 0.08 1.62 6.87 42.58 0.29 1.91 16 3 C -0.10 -1.44 9.86 22.49 0.22 -1.22 16 4 C -0.06 -1.43 9.73 22.78 0.22 -1.21 16 5 C 0.01 0.38 6.83 41.97 0.29 0.67 16 6 C 0.51 21.44 7.95 70.43 0.56 22.00 16 7 O -0.52 -22.19 16.18 20.06 0.32 -21.87 16 8 O -0.32 -15.28 9.66 -55.85 -0.54 -15.82 16 9 C 0.09 4.29 4.68 71.98 0.34 4.62 16 10 C 0.01 0.74 0.62 -52.23 -0.03 0.71 16 11 C -0.50 -27.66 7.92 25.60 0.20 -27.46 16 12 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 13 C 0.03 1.53 5.25 84.66 0.44 1.98 16 14 N -0.91 -50.83 11.31 21.45 0.24 -50.59 16 15 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 16 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 C 0.04 1.65 8.35 72.27 0.60 2.25 16 20 O -0.40 -19.28 12.40 -148.98 -1.85 -21.13 16 21 C 0.06 2.73 7.91 72.27 0.57 3.31 16 22 N -0.21 -8.11 11.31 -48.52 -0.55 -8.66 16 23 N -0.28 -8.65 11.43 -47.52 -0.54 -9.19 16 24 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.12 0.26 8.09 -2.39 -0.02 0.24 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.22 0.62 8.06 -2.91 -0.02 0.60 16 28 H 0.18 3.37 7.72 -2.91 -0.02 3.35 16 29 H 0.06 3.15 7.21 -2.38 -0.02 3.13 16 30 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.08 3.16 8.03 -2.39 -0.02 3.15 16 33 H 0.08 3.48 8.09 -2.39 -0.02 3.46 16 34 H 0.08 4.01 7.36 -2.39 -0.02 3.99 16 35 H 0.07 3.07 8.10 -2.39 -0.02 3.05 16 Total: -1.00 -72.88 312.43 4.66 -68.22 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.11 Total: 4.50 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.43 Total: 7.38 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -0.85 Total: -68.45 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -2.06 Total: -58.82 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.88 4.66 -68.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123167297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.472 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds