Wall clock time and date at job start Mon Mar 30 2020 23:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46923 * 179.97438 * 18 17 15 20 20 O 1.42897 * 109.46987 * 64.99952 * 19 18 17 21 21 C 1.35042 * 116.99658 * 179.97438 * 20 19 18 22 22 N 1.29839 * 120.00191 * 359.97438 * 21 20 19 23 23 O 1.35039 * 119.99986 * 179.97438 * 21 20 19 24 24 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 26 26 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 29 29 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 30 30 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 31 31 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 32 32 H 1.09005 * 109.46867 * 184.99949 * 19 18 17 33 33 H 1.09003 * 109.47216 * 304.99792 * 19 18 17 34 34 H 0.97004 * 120.00040 * 179.97438 * 22 21 20 35 35 H 0.96696 * 114.00330 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9753 -5.6730 -3.7563 20 8 5.6487 -6.4722 -2.7818 21 6 6.6693 -7.2411 -3.2187 22 7 6.9979 -7.2314 -4.4748 23 8 7.3481 -8.0200 -2.3492 24 1 -0.4850 0.8400 -0.0004 25 1 3.3594 0.3863 1.6623 26 1 5.7821 0.3556 2.0405 27 1 7.2121 -1.2443 0.8416 28 1 6.2399 -2.8385 -0.7537 29 1 5.4035 -3.8783 -2.0213 30 1 3.1964 -5.5609 -2.5460 31 1 3.2877 -4.3366 -3.8349 32 1 4.5483 -6.3187 -4.5237 33 1 5.6850 -4.9842 -4.2147 34 1 7.7313 -7.7834 -4.7886 35 1 8.0606 -8.5331 -2.7543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137887726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:17 Heat of formation + Delta-G solvation = -68.508641 kcal Electronic energy + Delta-G solvation = -20913.368129 eV Core-core repulsion = 17491.520024 eV Total energy + Delta-G solvation = -3421.848105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24050 -39.05590 -37.99672 -36.94628 -34.35193 -33.53662 -32.61745 -30.71058 -30.43720 -28.91354 -25.40218 -23.88601 -22.48353 -21.83104 -20.84444 -19.61027 -19.11765 -17.73749 -17.53876 -16.79079 -16.57255 -15.70995 -15.35124 -15.11975 -14.36008 -14.15401 -14.07939 -13.86262 -13.45450 -13.33695 -12.66635 -12.50886 -12.31872 -11.94450 -11.73302 -11.46926 -11.13459 -10.92066 -10.68462 -10.42830 -10.16374 -10.13442 -9.79300 -9.67450 -9.24278 -8.48576 -8.44076 -7.80197 -7.57603 -6.88735 -4.47077 1.84714 2.11954 2.18788 2.62065 3.09808 3.18451 3.29994 3.84856 3.96421 4.02457 4.30485 4.60819 4.65570 4.80850 5.06919 5.32804 5.41073 5.74844 5.81652 5.86222 5.99747 6.08034 6.11227 6.40035 6.52551 6.80966 7.02291 7.10118 7.11604 7.24454 7.41151 7.60525 7.76864 7.99348 8.03219 8.30288 8.49343 8.65482 8.88198 9.35428 10.08011 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.004324 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.706632 B = 6473.673735 C = 7230.998579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.402 4.402 8 H 0.124 0.876 9 C 0.118 3.882 10 C -0.226 4.226 11 C -0.065 4.065 12 C -0.254 4.254 13 C -0.040 4.040 14 C -0.249 4.249 15 C 0.562 3.438 16 O -0.528 6.528 17 N -0.748 5.748 18 C 0.124 3.876 19 C 0.078 3.922 20 O -0.290 6.290 21 C 0.536 3.464 22 N -0.804 5.804 23 O -0.506 6.506 24 H 0.287 0.713 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.394 0.606 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.352 0.648 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.522 -9.278 -6.153 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.429 4.429 8 H 0.142 0.858 9 C 0.113 3.887 10 C -0.245 4.245 11 C -0.084 4.084 12 C -0.274 4.274 13 C -0.059 4.059 14 C -0.254 4.254 15 C 0.355 3.645 16 O -0.406 6.406 17 N -0.404 5.404 18 C 0.000 4.000 19 C 0.004 3.996 20 O -0.195 6.195 21 C 0.273 3.727 22 N -0.475 5.475 23 O -0.303 6.303 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.229 0.771 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 10.402 -8.496 -6.132 14.764 hybrid contribution 1.978 -0.191 0.010 1.988 sum 12.380 -8.687 -6.122 16.316 Atomic orbital electron populations 1.69568 1.08211 1.30328 1.33565 1.26381 0.94861 1.01631 0.91256 0.86393 0.81336 0.79799 0.79192 1.19435 1.16555 1.21614 1.20204 0.90860 0.96630 1.35207 0.85815 1.17546 0.93136 0.89434 0.88602 1.21153 0.94701 1.05006 1.03637 1.20738 0.93743 0.96669 0.97229 1.20286 0.97878 1.03154 1.06067 1.20784 0.93580 0.95922 0.95627 1.19392 0.92752 1.06990 1.06287 1.18345 0.86201 0.79942 0.79972 1.90730 1.14173 1.68780 1.66897 1.45963 1.10133 1.40008 1.44273 1.21337 0.93845 0.91119 0.93685 1.23177 0.94060 0.92648 0.89757 1.85918 1.41126 1.53627 1.38817 1.21464 0.84937 0.84091 0.82227 1.69909 1.29632 1.37088 1.10859 1.84603 1.48061 1.56444 1.41223 0.90271 0.87775 0.88582 0.88555 0.88715 0.77139 0.90716 0.89003 0.89437 0.90123 0.83062 0.72395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.64 13.92 55.56 0.77 -20.86 16 2 C 0.08 2.12 5.47 -17.30 -0.09 2.03 16 3 Si 0.91 20.80 24.51 -169.99 -4.17 16.63 16 4 H -0.27 -5.86 6.76 56.52 0.38 -5.48 16 5 H -0.24 -5.69 6.72 56.52 0.38 -5.31 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.40 -11.35 8.31 -37.81 -0.31 -11.66 16 8 H 0.12 3.86 5.96 -52.49 -0.31 3.55 16 9 C 0.12 3.05 5.03 -106.54 -0.54 2.51 16 10 C -0.23 -5.38 7.00 -38.88 -0.27 -5.66 16 11 C -0.07 -1.37 10.01 -39.60 -0.40 -1.76 16 12 C -0.25 -5.07 10.03 -39.37 -0.39 -5.46 16 13 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 14 C -0.25 -5.90 5.92 -104.37 -0.62 -6.52 16 15 C 0.56 12.80 7.72 -12.51 -0.10 12.70 16 16 O -0.53 -13.97 13.54 5.27 0.07 -13.90 16 17 N -0.75 -12.93 5.45 -61.38 -0.33 -13.26 16 18 C 0.12 1.77 6.06 -4.04 -0.02 1.74 16 19 C 0.08 0.88 5.44 37.16 0.20 1.08 16 20 O -0.29 -3.69 10.12 -40.60 -0.41 -4.10 16 21 C 0.54 5.69 9.25 51.92 0.48 6.17 16 22 N -0.80 -7.77 12.93 29.09 0.38 -7.39 16 23 O -0.51 -4.30 13.61 -40.59 -0.55 -4.85 16 24 H 0.29 7.01 8.29 -40.82 -0.34 6.67 16 25 H 0.10 2.44 5.00 -52.49 -0.26 2.18 16 26 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.09 1.59 6.42 -52.49 -0.34 1.25 16 29 H 0.39 6.02 6.52 -40.82 -0.27 5.75 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.35 2.38 8.58 -40.82 -0.35 2.03 16 35 H 0.42 1.01 8.71 45.56 0.40 1.41 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -33.23 302.56 -4.96 -38.19 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -2.84 Total: 11.01 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.44 Total: -6.02 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.81 Total: -41.52 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.89 Total: -22.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.17 Total: 16.63 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.23 -4.96 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137887726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.319 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds