Wall clock time and date at job start Mon Mar 30 2020 23:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46923 * 179.97438 * 18 17 15 20 20 O 1.42897 * 109.46987 * 64.99952 * 19 18 17 21 21 C 1.35042 * 116.99658 * 179.97438 * 20 19 18 22 22 N 1.29839 * 120.00191 * 359.97438 * 21 20 19 23 23 O 1.35039 * 119.99986 * 179.97438 * 21 20 19 24 24 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 26 26 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 29 29 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 30 30 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 31 31 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 32 32 H 1.09005 * 109.46867 * 184.99949 * 19 18 17 33 33 H 1.09003 * 109.47216 * 304.99792 * 19 18 17 34 34 H 0.97004 * 120.00040 * 179.97438 * 22 21 20 35 35 H 0.96696 * 114.00330 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9753 -5.6730 -3.7563 20 8 5.6487 -6.4722 -2.7818 21 6 6.6693 -7.2411 -3.2187 22 7 6.9979 -7.2314 -4.4748 23 8 7.3481 -8.0200 -2.3492 24 1 -0.4850 0.8400 -0.0004 25 1 3.3594 0.3863 1.6623 26 1 5.7821 0.3556 2.0405 27 1 7.2121 -1.2443 0.8416 28 1 6.2399 -2.8385 -0.7537 29 1 5.4035 -3.8783 -2.0213 30 1 3.1964 -5.5609 -2.5460 31 1 3.2877 -4.3366 -3.8349 32 1 4.5483 -6.3187 -4.5237 33 1 5.6850 -4.9842 -4.2147 34 1 7.7313 -7.7834 -4.7886 35 1 8.0606 -8.5331 -2.7543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137887726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:17 Heat of formation + Delta-G solvation = -99.628862 kcal Electronic energy + Delta-G solvation = -20914.717603 eV Core-core repulsion = 17491.520024 eV Total energy + Delta-G solvation = -3423.197579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14162 -40.66359 -38.98224 -38.52444 -35.94865 -35.33242 -33.38082 -32.33074 -32.22722 -30.27993 -27.21800 -25.06018 -23.94349 -23.09963 -22.41179 -21.25250 -19.91117 -19.44455 -18.56051 -18.31647 -17.62479 -17.12068 -16.74739 -16.34619 -15.84593 -15.80549 -15.66561 -15.35342 -14.70691 -14.49471 -14.37425 -14.03482 -13.89593 -13.63643 -13.21085 -12.80601 -12.67817 -12.47889 -12.20040 -12.05871 -11.94534 -11.60193 -11.07375 -10.86705 -10.42787 -10.32044 -10.02221 -9.51100 -9.40308 -8.80895 -6.47339 0.35215 0.84819 1.11895 1.25303 1.38667 1.43272 1.47983 2.11598 2.26921 2.40814 2.72781 3.54340 3.57344 3.85857 3.92719 4.11393 4.23770 4.26931 4.42925 4.45869 4.68368 4.74860 4.80595 4.89111 5.02669 5.31109 5.47451 5.53539 5.59232 5.69740 5.87778 5.97274 6.28255 6.41431 6.48763 6.66765 6.79956 6.90803 7.37988 7.62948 8.23353 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.004324 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.706632 B = 6473.673735 C = 7230.998579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.037 3.963 3 Si 0.967 3.033 4 H -0.249 1.249 5 H -0.249 1.249 6 H -0.280 1.280 7 C -0.451 4.451 8 H 0.073 0.927 9 C 0.101 3.899 10 C -0.247 4.247 11 C -0.061 4.061 12 C -0.231 4.231 13 C -0.040 4.040 14 C -0.268 4.268 15 C 0.555 3.445 16 O -0.576 6.576 17 N -0.726 5.726 18 C 0.121 3.879 19 C 0.093 3.907 20 O -0.314 6.314 21 C 0.531 3.469 22 N -0.806 5.806 23 O -0.512 6.512 24 H 0.293 0.707 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.407 0.593 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.366 0.634 35 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.236 -9.191 -6.341 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.173 1.173 5 H -0.173 1.173 6 H -0.206 1.206 7 C -0.480 4.480 8 H 0.091 0.909 9 C 0.097 3.903 10 C -0.266 4.266 11 C -0.079 4.079 12 C -0.250 4.250 13 C -0.058 4.058 14 C -0.272 4.272 15 C 0.347 3.653 16 O -0.457 6.457 17 N -0.382 5.382 18 C -0.002 4.002 19 C 0.019 3.981 20 O -0.220 6.220 21 C 0.267 3.733 22 N -0.479 5.479 23 O -0.313 6.313 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.154 0.846 29 H 0.244 0.756 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.186 0.814 35 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 15.200 -8.465 -6.340 18.517 hybrid contribution 0.869 -0.471 0.048 0.990 sum 16.069 -8.936 -6.292 19.433 Atomic orbital electron populations 1.69623 1.09518 1.31376 1.37017 1.27108 0.95536 1.04420 0.90654 0.85483 0.79467 0.75949 0.80132 1.17320 1.17265 1.20636 1.19961 0.92463 0.95632 1.39931 0.90925 1.17806 0.92545 0.90863 0.89084 1.21262 0.96413 1.05166 1.03777 1.21247 0.92474 0.97055 0.97166 1.20935 1.00127 1.00650 1.03287 1.21211 0.92231 0.96668 0.95706 1.19816 0.94521 1.06563 1.06331 1.18501 0.85918 0.80468 0.80371 1.90732 1.16391 1.70327 1.68289 1.45737 1.10332 1.38857 1.43230 1.21477 0.95127 0.90598 0.93004 1.23001 0.93265 0.92753 0.89095 1.85830 1.42164 1.54331 1.39653 1.21357 0.84821 0.84366 0.82712 1.69865 1.30169 1.37288 1.10552 1.84575 1.48849 1.56422 1.41492 0.89626 0.87989 0.84539 0.83872 0.84604 0.75573 0.92083 0.88778 0.87664 0.88963 0.81389 0.69678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.75 13.92 21.88 0.30 -49.44 16 2 C 0.04 2.09 5.47 85.37 0.47 2.56 16 3 Si 0.97 43.88 24.51 68.60 1.68 45.56 16 4 H -0.25 -10.30 6.76 99.48 0.67 -9.63 16 5 H -0.25 -11.35 6.72 99.48 0.67 -10.68 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.45 -27.33 8.31 23.41 0.19 -27.13 16 8 H 0.07 5.02 5.96 -2.91 -0.02 5.01 16 9 C 0.10 5.35 5.03 -21.11 -0.11 5.24 16 10 C -0.25 -11.45 7.00 22.72 0.16 -11.29 16 11 C -0.06 -2.29 10.01 22.26 0.22 -2.07 16 12 C -0.23 -7.85 10.03 22.41 0.22 -7.62 16 13 C -0.04 -1.45 9.52 22.50 0.21 -1.23 16 14 C -0.27 -12.56 5.92 -19.70 -0.12 -12.68 16 15 C 0.55 25.85 7.72 86.67 0.67 26.52 16 16 O -0.58 -32.61 13.54 -4.05 -0.05 -32.66 16 17 N -0.73 -24.49 5.45 -466.35 -2.54 -27.03 16 18 C 0.12 3.41 6.06 86.38 0.52 3.93 16 19 C 0.09 1.90 5.44 71.98 0.39 2.30 16 20 O -0.31 -7.31 10.12 -60.43 -0.61 -7.93 16 21 C 0.53 9.88 9.25 130.54 1.21 11.09 16 22 N -0.81 -13.23 12.93 -290.69 -3.76 -16.99 16 23 O -0.51 -7.35 13.61 -60.40 -0.82 -8.17 16 24 H 0.29 15.32 8.29 -92.71 -0.77 14.55 16 25 H 0.10 4.70 5.00 -2.91 -0.01 4.68 16 26 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 28 H 0.14 3.81 6.42 -2.91 -0.02 3.79 16 29 H 0.41 11.34 6.52 -92.71 -0.60 10.73 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.11 1.83 8.10 -2.38 -0.02 1.81 16 33 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.37 3.85 8.58 -92.71 -0.79 3.05 16 35 H 0.44 0.85 8.71 -74.06 -0.65 0.20 16 Total: -1.00 -78.31 302.56 -2.69 -81.01 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -0.94 Total: 26.05 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.05 Total: -10.39 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -6.00 Total: -93.46 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -1.49 Total: -48.76 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.68 Total: 45.56 kcal Total: -78.31 -2.69 -81.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137887726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.623 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds