Wall clock time and date at job start Mon Mar 30 2020 23:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99721 * 2 1 4 4 H 1.48497 * 109.47100 * 264.66897 * 3 2 1 5 5 H 1.48503 * 109.46995 * 24.66910 * 3 2 1 6 6 H 1.48503 * 109.47040 * 144.66917 * 3 2 1 7 7 C 1.37881 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00274 * 4.98143 * 7 2 1 9 9 C 1.50700 * 119.99751 * 184.98299 * 7 2 1 10 10 H 1.09006 * 109.46777 * 25.09940 * 9 7 2 11 11 C 1.50692 * 109.47135 * 145.09628 * 9 7 2 12 12 O 1.21290 * 119.99967 * 120.00012 * 11 9 7 13 13 N 1.34778 * 120.00428 * 300.00040 * 11 9 7 14 14 O 1.41598 * 120.00038 * 179.97438 * 13 11 9 15 15 C 1.42901 * 113.99683 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46829 * 179.97438 * 15 14 13 17 17 N 1.34779 * 119.99652 * 180.02562 * 16 15 14 18 18 O 1.21275 * 120.00209 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47150 * 265.10051 * 9 7 2 20 20 C 1.38233 * 119.99975 * 305.01840 * 19 9 7 21 21 C 1.38235 * 120.00038 * 179.80937 * 20 19 9 22 22 C 1.38235 * 119.99852 * 0.39939 * 21 20 19 23 23 C 1.38236 * 120.00033 * 359.85571 * 22 21 20 24 24 C 1.38230 * 119.99983 * 359.95619 * 23 22 21 25 25 H 0.97000 * 120.00205 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99789 * 0.02562 * 13 11 9 27 27 H 1.08990 * 109.47394 * 299.99654 * 15 14 13 28 28 H 1.09003 * 109.47331 * 60.00322 * 15 14 13 29 29 H 0.96994 * 120.00456 * 359.97438 * 17 16 15 30 30 H 0.97001 * 120.00021 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.99562 * 0.02562 * 20 19 9 32 32 H 1.07997 * 119.99754 * 180.23325 * 21 20 19 33 33 H 1.07999 * 119.99927 * 179.83031 * 22 21 20 34 34 H 1.08000 * 119.99554 * 179.97438 * 23 22 21 35 35 H 1.08006 * 119.99944 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6092 1.9814 -1.3940 5 1 1.3947 2.6826 0.5844 6 1 3.4858 1.4754 0.8097 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0822 9 6 3.5073 -1.1966 0.1128 10 1 3.8352 -0.2865 0.6153 11 6 3.9490 -2.3971 0.9093 12 8 4.6848 -3.2205 0.4076 13 7 3.5264 -2.5560 2.1793 14 8 3.9411 -3.6844 2.9275 15 6 3.4175 -3.7248 4.2565 16 6 3.9201 -4.9609 4.9570 17 7 3.5532 -5.2104 6.2296 18 8 4.6540 -5.7315 4.3752 19 6 4.1149 -1.2565 -1.2649 20 6 3.7603 -2.2720 -2.1331 21 6 4.3146 -2.3248 -3.3983 22 6 5.2299 -1.3667 -3.7924 23 6 5.5885 -0.3542 -2.9223 24 6 5.0312 -0.2992 -1.6585 25 1 -0.4850 0.8400 -0.0004 26 1 2.9377 -1.8976 2.5805 27 1 3.7433 -2.8396 4.8025 28 1 2.3284 -3.7473 4.2174 29 1 2.9660 -4.5943 6.6948 30 1 3.8770 -6.0058 6.6806 31 1 3.0474 -3.0222 -1.8241 32 1 4.0347 -3.1161 -4.0779 33 1 5.6650 -1.4095 -4.7799 34 1 6.3039 0.3941 -3.2301 35 1 5.3111 0.4921 -0.9788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137887872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:40 Heat of formation + Delta-G solvation = -69.109273 kcal Electronic energy + Delta-G solvation = -21103.673225 eV Core-core repulsion = 17681.799074 eV Total energy + Delta-G solvation = -3421.874150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00120 -40.61784 -39.42210 -37.91581 -35.57374 -34.84470 -33.55045 -32.89372 -31.62169 -29.56500 -28.51329 -25.51370 -23.40066 -22.88297 -22.17427 -21.07029 -19.44003 -19.12737 -18.56290 -17.90002 -17.60195 -17.23256 -17.20869 -16.35890 -15.98824 -15.86871 -15.46769 -15.17157 -14.89105 -14.66830 -14.48086 -14.12351 -13.84956 -13.77472 -13.47941 -12.98262 -12.70362 -12.24604 -12.01862 -11.96465 -11.63906 -11.44385 -11.30189 -10.93001 -10.80652 -10.64319 -9.90626 -9.63430 -9.39581 -8.33973 -6.44765 0.52634 0.68228 0.92041 1.36451 1.41604 1.45995 1.49195 1.78572 2.32184 2.53106 2.95245 3.13610 3.60398 3.89864 4.05033 4.10386 4.12273 4.19471 4.22170 4.33192 4.40294 4.54770 4.81473 4.90286 5.16449 5.32097 5.36602 5.69601 5.70596 5.74691 5.83598 5.93734 6.19010 6.28142 6.32061 6.46065 6.59207 7.20749 7.21293 7.41648 8.79883 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.005496 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.790652 B = 5092.979748 C = 6253.353675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.043 3.957 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.227 1.227 7 C -0.510 4.510 8 H 0.040 0.960 9 C 0.042 3.958 10 H 0.094 0.906 11 C 0.540 3.460 12 O -0.577 6.577 13 N -0.579 5.579 14 O -0.166 6.166 15 C 0.000 4.000 16 C 0.526 3.474 17 N -0.818 5.818 18 O -0.585 6.585 19 C -0.061 4.061 20 C -0.104 4.104 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.148 4.148 25 H 0.273 0.727 26 H 0.425 0.575 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.424 0.576 30 H 0.416 0.584 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 1.489 9.251 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.159 4.159 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.151 1.151 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.020 3.980 10 H 0.112 0.888 11 C 0.330 3.670 12 O -0.455 6.455 13 N -0.283 5.283 14 O -0.170 6.170 15 C -0.080 4.080 16 C 0.309 3.691 17 N -0.386 5.386 18 O -0.464 6.464 19 C -0.062 4.062 20 C -0.123 4.123 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.166 4.166 25 H 0.082 0.918 26 H 0.269 0.731 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.257 0.743 30 H 0.249 0.751 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.466 0.489 8.345 10.568 hybrid contribution -0.925 0.510 0.841 1.350 sum 5.541 0.999 9.186 10.774 Atomic orbital electron populations 1.69985 1.08002 1.28693 1.49549 1.25678 0.95284 1.02116 0.92792 0.86135 0.80211 0.79088 0.80211 1.19355 1.20621 1.15088 1.20433 0.87467 0.93980 1.52847 0.94205 1.18410 0.96615 0.92933 0.90007 0.88818 1.21650 0.78096 0.88232 0.79058 1.90618 1.38577 1.46279 1.69989 1.47533 1.52138 1.17926 1.10715 1.90671 1.69650 1.31831 1.24813 1.23017 1.02145 0.98921 0.83868 1.20160 0.79742 0.86096 0.83152 1.43364 1.52866 1.30084 1.12267 1.90815 1.38439 1.50203 1.66977 1.20031 0.94760 0.95132 0.96315 1.20861 0.99050 0.97745 0.94613 1.21354 0.98140 1.00172 0.95640 1.21375 0.98201 0.94873 1.00773 1.21389 1.00311 0.99300 0.93247 1.21275 0.97558 0.99511 0.98250 0.91807 0.73115 0.85190 0.86251 0.74323 0.75092 0.89374 0.84893 0.83167 0.83117 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.38 13.96 21.45 0.30 -51.08 16 2 C 0.04 2.18 5.47 84.65 0.46 2.64 16 3 Si 0.92 37.92 27.18 68.60 1.86 39.78 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.23 -8.09 6.06 99.48 0.60 -7.48 16 7 C -0.51 -26.19 8.06 25.60 0.21 -25.99 16 8 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 9 C 0.04 1.91 1.89 -13.04 -0.02 1.88 16 10 H 0.09 3.84 4.89 -2.38 -0.01 3.83 16 11 C 0.54 25.26 7.18 87.65 0.63 25.89 16 12 O -0.58 -31.16 15.78 14.34 0.23 -30.93 16 13 N -0.58 -22.58 6.29 -173.53 -1.09 -23.67 16 14 O -0.17 -6.44 10.64 -11.16 -0.12 -6.56 16 15 C 0.00 0.01 6.71 71.24 0.48 0.49 16 16 C 0.53 13.08 8.18 87.66 0.72 13.80 16 17 N -0.82 -9.82 8.87 -173.53 -1.54 -11.36 16 18 O -0.59 -22.36 17.34 16.02 0.28 -22.08 16 19 C -0.06 -2.75 4.09 -19.87 -0.08 -2.83 16 20 C -0.10 -4.74 8.25 22.27 0.18 -4.56 16 21 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 22 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 23 C -0.12 -4.02 10.05 22.27 0.22 -3.79 16 24 C -0.15 -5.63 9.46 22.27 0.21 -5.42 16 25 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.43 13.73 8.43 -92.70 -0.78 12.95 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.42 1.61 8.83 -92.71 -0.82 0.79 16 30 H 0.42 4.19 8.93 -92.71 -0.83 3.36 16 31 H 0.09 4.38 7.93 -2.91 -0.02 4.36 16 32 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.13 4.27 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -82.68 313.54 2.00 -80.68 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -1.37 Total: 31.97 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 3.45 Total: -6.76 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.33 Total: -86.10 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: 0.39 Total: -59.57 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.86 Total: 39.78 kcal Total: -82.68 2.00 -80.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137887872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.572 kcal (2) G-P(sol) polarization free energy of solvation -82.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds