Wall clock time and date at job start Tue Mar 31 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48503 * 109.47340 * 270.00144 * 3 2 1 5 5 H 1.48507 * 109.47350 * 29.99945 * 3 2 1 6 6 H 1.48497 * 109.47535 * 149.99780 * 3 2 1 7 7 C 1.37874 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47345 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99813 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00504 * 180.02562 * 10 9 7 13 13 C 1.40122 * 120.00607 * 185.60268 * 12 10 9 14 14 C 1.38967 * 120.50414 * 24.55911 * 13 12 10 15 15 C 1.38730 * 118.42500 * 179.97438 * 14 13 12 16 16 C 1.38085 * 119.35009 * 0.02562 * 15 14 13 17 17 N 1.31995 * 120.96732 * 359.97438 * 16 15 14 18 18 C 1.32156 * 121.72336 * 0.02562 * 17 16 15 19 19 O 1.35744 * 119.72602 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99991 * 359.97438 * 19 18 17 21 21 C 1.54033 * 113.81414 * 246.18606 * 20 19 18 22 22 O 1.44173 * 85.51888 * 223.19598 * 21 20 19 23 23 C 1.44180 * 93.33951 * 24.19580 * 22 21 20 24 24 H 0.97001 * 119.99990 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47078 * 59.99670 * 9 7 2 26 26 H 1.08998 * 109.47281 * 300.00018 * 9 7 2 27 27 H 0.97003 * 119.99757 * 5.59659 * 12 10 9 28 28 H 1.08004 * 120.78659 * 0.25316 * 14 13 12 29 29 H 1.07997 * 120.32800 * 180.02562 * 15 14 13 30 30 H 1.07998 * 119.51801 * 179.97438 * 16 15 14 31 31 H 1.08994 * 113.00087 * 18.17112 * 20 19 18 32 32 H 1.08999 * 113.86492 * 337.34550 * 21 20 19 33 33 H 1.09000 * 113.86403 * 109.05113 * 21 20 19 34 34 H 1.09005 * 113.86520 * 221.66126 * 23 22 21 35 35 H 1.08994 * 113.86869 * 89.95072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4228 -3.4229 0.0009 12 7 1.7810 -4.9152 0.0018 13 6 2.6861 -5.9784 0.1201 14 6 3.9215 -5.7888 0.7276 15 6 4.7840 -6.8713 0.8220 16 6 4.3933 -8.0943 0.3137 17 7 3.2137 -8.2465 -0.2586 18 6 2.3608 -7.2431 -0.3702 19 8 1.1584 -7.4450 -0.9668 20 6 0.8860 -8.7626 -1.4482 21 6 0.7710 -8.8531 -2.9816 22 8 -0.3701 -9.6984 -2.7329 23 6 -0.6082 -9.1361 -1.4268 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5574 -0.8880 26 1 0.6247 -2.5563 0.8919 27 1 0.8311 -5.0938 -0.0796 28 1 4.2016 -4.8228 1.1210 29 1 5.7514 -6.7587 1.2886 30 1 5.0628 -8.9387 0.3854 31 1 1.5353 -9.5194 -1.0082 32 1 0.5224 -7.9067 -3.4618 33 1 1.6060 -9.3679 -3.4568 34 1 -0.8671 -9.8755 -0.6689 35 1 -1.2778 -8.2762 -1.4323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:14 Heat of formation + Delta-G solvation = -41.257387 kcal Electronic energy + Delta-G solvation = -20970.891823 eV Core-core repulsion = 17550.225421 eV Total energy + Delta-G solvation = -3420.666402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15180 -40.30857 -38.77228 -37.32719 -34.59107 -33.06493 -31.70886 -30.26474 -29.03570 -28.22197 -26.85548 -24.44083 -23.60795 -22.62365 -20.90031 -19.84866 -18.90876 -17.80908 -16.86623 -16.65546 -16.35510 -16.06896 -15.84595 -15.29357 -14.94340 -14.84091 -14.46746 -14.26093 -13.41116 -13.17907 -12.89117 -12.76778 -12.65653 -12.22727 -12.18804 -11.71893 -11.47809 -10.92640 -10.86007 -10.82907 -10.55939 -10.04941 -10.03892 -9.84893 -9.39265 -9.26972 -8.73632 -8.51816 -7.73072 -6.14267 -4.15089 1.17037 1.33983 2.84707 3.30041 3.34345 3.35298 3.35710 3.39961 3.51522 3.83609 4.08025 4.30539 4.41860 4.77845 4.79884 4.97295 5.07989 5.09746 5.22145 5.24290 5.27765 5.42535 5.54422 5.70391 5.76127 5.97229 6.09930 6.22703 6.46709 6.80933 7.02272 7.17542 7.23780 7.75484 7.82714 7.88709 8.20666 8.86942 8.95463 9.50418 10.97907 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.004170 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.075932 B = 6713.231270 C = 7835.242905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.007 3.993 10 C 0.515 3.485 11 O -0.524 6.524 12 N -0.675 5.675 13 C 0.111 3.889 14 C -0.068 4.068 15 C -0.180 4.180 16 C 0.098 3.902 17 N -0.523 5.523 18 C 0.277 3.723 19 O -0.295 6.295 20 C 0.024 3.976 21 C 0.025 3.975 22 O -0.372 6.372 23 C 0.039 3.961 24 H 0.263 0.737 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.414 0.586 28 H 0.165 0.835 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -18.247 -0.051 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.307 3.693 11 O -0.399 6.399 12 N -0.320 5.320 13 C 0.011 3.989 14 C -0.095 4.095 15 C -0.201 4.201 16 C -0.058 4.058 17 N -0.246 5.246 18 C 0.095 3.905 19 O -0.203 6.203 20 C -0.033 4.033 21 C -0.052 4.052 22 O -0.291 6.291 23 C -0.038 4.038 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.250 0.750 28 H 0.182 0.818 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.430 -18.689 -0.571 18.855 hybrid contribution 0.289 1.462 0.297 1.520 sum 2.719 -17.227 -0.274 17.442 Atomic orbital electron populations 1.69951 1.06068 1.27127 1.50625 1.25001 0.94924 0.99557 0.94977 0.86402 0.79813 0.82483 0.78237 1.20549 1.21202 1.19625 1.21114 0.94243 0.88890 1.50884 0.90561 1.19286 0.93979 0.89925 0.99983 1.22406 0.91502 0.82810 0.72558 1.90500 1.17868 1.84145 1.47346 1.44045 1.09974 1.04797 1.73183 1.17999 0.93732 0.86583 1.00548 1.21873 0.91495 1.01152 0.95020 1.21940 1.01438 0.93200 1.03476 1.22193 0.91425 0.97114 0.95055 1.67060 1.05265 1.31873 1.20433 1.19455 0.86960 0.89693 0.94391 1.86340 1.30677 1.32107 1.71190 1.26111 0.97689 0.85089 0.94449 1.24577 0.89109 0.95436 0.96035 1.89725 1.49006 1.56582 1.33831 1.24392 0.94959 0.98558 0.85863 0.92747 0.92970 0.92825 0.75048 0.81766 0.84423 0.82596 0.85551 0.89028 0.88420 0.88170 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.29 8.92 -34.44 -0.31 -14.60 16 8 H 0.08 2.20 6.75 -52.49 -0.35 1.85 16 9 C 0.01 0.18 5.46 -29.04 -0.16 0.02 16 10 C 0.52 11.14 7.64 -10.99 -0.08 11.05 16 11 O -0.52 -12.56 12.67 5.54 0.07 -12.49 16 12 N -0.67 -11.78 5.29 -9.65 -0.05 -11.83 16 13 C 0.11 1.83 6.47 -83.33 -0.54 1.29 16 14 C -0.07 -1.08 8.82 -39.13 -0.35 -1.42 16 15 C -0.18 -2.23 10.10 -39.46 -0.40 -2.63 16 16 C 0.10 1.14 11.17 -17.54 -0.20 0.95 16 17 N -0.52 -7.09 8.59 -13.17 -0.11 -7.21 16 18 C 0.28 4.12 7.51 -16.95 -0.13 3.99 16 19 O -0.30 -3.99 9.58 -18.94 -0.18 -4.17 16 20 C 0.02 0.26 4.43 -25.65 -0.11 0.15 16 21 C 0.03 0.27 9.05 37.61 0.34 0.61 16 22 O -0.37 -4.34 12.45 -35.23 -0.44 -4.77 16 23 C 0.04 0.37 9.05 37.61 0.34 0.71 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.41 6.28 8.36 -40.82 -0.34 5.93 16 28 H 0.17 2.92 5.90 -52.48 -0.31 2.61 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.40 6.87 -51.93 -0.36 1.04 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -31.75 307.98 -5.92 -37.67 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.88 Total: 4.94 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.69 Total: 1.61 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.57 Total: -43.93 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.55 Total: -21.43 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.75 -5.92 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.589 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds