Wall clock time and date at job start Tue Mar 31 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48503 * 109.47340 * 270.00144 * 3 2 1 5 5 H 1.48507 * 109.47350 * 29.99945 * 3 2 1 6 6 H 1.48497 * 109.47535 * 149.99780 * 3 2 1 7 7 C 1.37874 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47345 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99813 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00504 * 180.02562 * 10 9 7 13 13 C 1.40122 * 120.00607 * 185.60268 * 12 10 9 14 14 C 1.38967 * 120.50414 * 24.55911 * 13 12 10 15 15 C 1.38730 * 118.42500 * 179.97438 * 14 13 12 16 16 C 1.38085 * 119.35009 * 0.02562 * 15 14 13 17 17 N 1.31995 * 120.96732 * 359.97438 * 16 15 14 18 18 C 1.32156 * 121.72336 * 0.02562 * 17 16 15 19 19 O 1.35744 * 119.72602 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99991 * 359.97438 * 19 18 17 21 21 C 1.54033 * 113.81414 * 246.18606 * 20 19 18 22 22 O 1.44173 * 85.51888 * 223.19598 * 21 20 19 23 23 C 1.44180 * 93.33951 * 24.19580 * 22 21 20 24 24 H 0.97001 * 119.99990 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47078 * 59.99670 * 9 7 2 26 26 H 1.08998 * 109.47281 * 300.00018 * 9 7 2 27 27 H 0.97003 * 119.99757 * 5.59659 * 12 10 9 28 28 H 1.08004 * 120.78659 * 0.25316 * 14 13 12 29 29 H 1.07997 * 120.32800 * 180.02562 * 15 14 13 30 30 H 1.07998 * 119.51801 * 179.97438 * 16 15 14 31 31 H 1.08994 * 113.00087 * 18.17112 * 20 19 18 32 32 H 1.08999 * 113.86492 * 337.34550 * 21 20 19 33 33 H 1.09000 * 113.86403 * 109.05113 * 21 20 19 34 34 H 1.09005 * 113.86520 * 221.66126 * 23 22 21 35 35 H 1.08994 * 113.86869 * 89.95072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4228 -3.4229 0.0009 12 7 1.7810 -4.9152 0.0018 13 6 2.6861 -5.9784 0.1201 14 6 3.9215 -5.7888 0.7276 15 6 4.7840 -6.8713 0.8220 16 6 4.3933 -8.0943 0.3137 17 7 3.2137 -8.2465 -0.2586 18 6 2.3608 -7.2431 -0.3702 19 8 1.1584 -7.4450 -0.9668 20 6 0.8860 -8.7626 -1.4482 21 6 0.7710 -8.8531 -2.9816 22 8 -0.3701 -9.6984 -2.7329 23 6 -0.6082 -9.1361 -1.4268 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5574 -0.8880 26 1 0.6247 -2.5563 0.8919 27 1 0.8311 -5.0938 -0.0796 28 1 4.2016 -4.8228 1.1210 29 1 5.7514 -6.7587 1.2886 30 1 5.0628 -8.9387 0.3854 31 1 1.5353 -9.5194 -1.0082 32 1 0.5224 -7.9067 -3.4618 33 1 1.6060 -9.3679 -3.4568 34 1 -0.8671 -9.8755 -0.6689 35 1 -1.2778 -8.2762 -1.4323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:14 Heat of formation + Delta-G solvation = -65.327756 kcal Electronic energy + Delta-G solvation = -20971.935592 eV Core-core repulsion = 17550.225421 eV Total energy + Delta-G solvation = -3421.710171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21650 -41.35986 -40.22407 -38.34835 -36.05744 -35.14264 -32.89259 -31.65595 -30.44668 -29.44245 -27.64125 -26.12641 -24.90787 -23.91069 -21.87231 -21.36949 -19.94800 -19.07846 -18.57288 -17.73235 -17.59761 -17.30377 -17.09910 -16.47766 -16.43962 -16.01060 -15.90297 -15.65802 -14.97929 -14.27753 -14.19448 -14.13940 -13.75153 -13.57894 -13.34871 -13.18847 -12.81245 -12.63898 -12.57956 -12.07428 -12.02122 -11.77992 -11.48387 -11.16698 -10.80099 -10.64335 -10.51796 -10.18979 -8.95016 -8.26830 -6.34649 0.05303 0.21361 1.41505 1.41716 1.54070 1.72218 1.84163 2.06984 2.43569 2.54349 2.75751 3.09314 3.19609 3.32638 3.79257 3.92476 3.95630 4.12150 4.18231 4.32083 4.38218 4.49173 4.49608 4.71704 4.86582 4.92084 4.95818 5.04862 5.18250 5.20270 5.31585 5.58235 5.71238 5.97670 6.15893 6.47950 6.75724 6.78343 7.21277 7.36309 8.85282 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.004170 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.075932 B = 6713.231270 C = 7835.242905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.522 3.478 11 O -0.554 6.554 12 N -0.660 5.660 13 C 0.074 3.926 14 C -0.083 4.083 15 C -0.174 4.174 16 C 0.114 3.886 17 N -0.526 5.526 18 C 0.280 3.720 19 O -0.303 6.303 20 C 0.019 3.981 21 C 0.025 3.975 22 O -0.389 6.389 23 C 0.043 3.957 24 H 0.268 0.732 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.422 0.578 28 H 0.140 0.860 29 H 0.170 0.830 30 H 0.202 0.798 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -19.836 0.053 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.029 4.029 10 C 0.313 3.687 11 O -0.431 6.431 12 N -0.305 5.305 13 C -0.024 4.024 14 C -0.110 4.110 15 C -0.194 4.194 16 C -0.042 4.042 17 N -0.249 5.249 18 C 0.099 3.901 19 O -0.212 6.212 20 C -0.038 4.038 21 C -0.052 4.052 22 O -0.308 6.308 23 C -0.034 4.034 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.260 0.740 28 H 0.158 0.842 29 H 0.187 0.813 30 H 0.219 0.781 31 H 0.148 0.852 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.319 -20.329 -0.471 20.604 hybrid contribution 0.034 1.789 0.275 1.810 sum 3.354 -18.541 -0.196 18.843 Atomic orbital electron populations 1.70029 1.07189 1.28183 1.50952 1.25776 0.95811 1.02756 0.94391 0.85443 0.78534 0.78540 0.78516 1.19825 1.20022 1.19645 1.21341 0.93820 0.90877 1.51497 0.92196 1.19096 0.94122 0.90306 0.99332 1.21735 0.90394 0.83717 0.72864 1.90483 1.18578 1.84902 1.49159 1.43567 1.10743 1.03904 1.72312 1.18149 0.94177 0.86854 1.03233 1.21853 0.92195 1.01415 0.95578 1.22269 1.01985 0.92286 1.02878 1.22985 0.90928 0.98025 0.92221 1.67232 1.05820 1.31069 1.20755 1.19429 0.87546 0.89207 0.93957 1.86331 1.30179 1.33633 1.71010 1.26322 0.98763 0.84009 0.94716 1.24645 0.89281 0.95434 0.95812 1.89712 1.49376 1.56946 1.34792 1.24544 0.93981 0.99247 0.85597 0.92346 0.93655 0.93352 0.74007 0.84246 0.81261 0.78118 0.85239 0.89326 0.87118 0.85941 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.77 8.92 25.60 0.23 -30.54 16 8 H 0.06 3.57 6.75 -2.91 -0.02 3.55 16 9 C 0.01 0.55 5.46 29.10 0.16 0.71 16 10 C 0.52 23.39 7.64 87.66 0.67 24.06 16 11 O -0.55 -27.57 12.67 -3.08 -0.04 -27.61 16 12 N -0.66 -23.61 5.29 -302.81 -1.60 -25.21 16 13 C 0.07 2.43 6.47 38.29 0.25 2.68 16 14 C -0.08 -2.61 8.82 22.56 0.20 -2.41 16 15 C -0.17 -3.88 10.10 22.35 0.23 -3.65 16 16 C 0.11 2.25 11.17 84.63 0.95 3.19 16 17 N -0.53 -12.87 8.59 -308.47 -2.65 -15.52 16 18 C 0.28 8.00 7.51 84.95 0.64 8.63 16 19 O -0.30 -7.92 9.58 -90.69 -0.87 -8.79 16 20 C 0.02 0.38 4.43 31.29 0.14 0.52 16 21 C 0.02 0.49 9.05 72.27 0.65 1.15 16 22 O -0.39 -8.48 12.45 -148.98 -1.86 -10.33 16 23 C 0.04 0.75 9.05 72.27 0.65 1.40 16 24 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.42 13.14 8.36 -92.71 -0.78 12.37 16 28 H 0.14 5.14 5.90 -2.91 -0.02 5.12 16 29 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.20 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.13 2.59 6.87 -2.39 -0.02 2.57 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.01 307.98 0.88 -68.13 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.36 Total: 18.97 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.22 Total: 6.85 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.97 Total: -93.64 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.76 Total: -46.73 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.01 0.88 -68.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.806 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds