Wall clock time and date at job start Tue Mar 31 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 116.99635 * 2 1 4 4 O 1.21518 * 119.99751 * 0.02562 * 3 2 1 5 5 C 1.47374 * 120.00135 * 180.02562 * 3 2 1 6 6 C 1.40039 * 120.60595 * 5.52032 * 5 3 2 7 7 C 1.38317 * 118.34868 * 180.25872 * 6 5 3 8 8 C 1.50704 * 120.25391 * 179.71567 * 7 6 5 9 9 C 1.38398 * 119.49017 * 359.44723 * 7 6 5 10 10 N 1.31850 * 121.20994 * 0.24705 * 9 7 6 11 11 C 1.32332 * 121.79369 * 0.03175 * 10 9 7 12 12 N 1.38782 * 119.81235 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00036 * 354.42998 * 12 11 10 14 14 O 1.21261 * 120.00199 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00132 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.47558 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99912 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00551 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99929 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00342 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47321 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47051 * 120.00573 * 20 18 16 23 23 H 1.48500 * 109.47364 * 240.00319 * 20 18 16 24 24 H 1.08992 * 109.47503 * 299.99809 * 1 2 3 25 25 H 1.08993 * 109.47199 * 60.00467 * 1 2 3 26 26 H 1.09007 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.82741 * 359.97438 * 6 5 3 28 28 H 1.08998 * 109.47559 * 269.72584 * 8 7 6 29 29 H 1.08998 * 109.47213 * 29.72889 * 8 7 6 30 30 H 1.09007 * 109.47096 * 149.72556 * 8 7 6 31 31 H 1.07997 * 119.39911 * 180.27313 * 9 7 6 32 32 H 0.96995 * 119.99525 * 174.42923 * 12 11 10 33 33 H 1.08997 * 109.47131 * 300.00493 * 15 13 12 34 34 H 1.09008 * 109.47051 * 60.00175 * 15 13 12 35 35 H 0.96999 * 120.00231 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4018 2.2198 0.0005 5 6 3.5354 1.2780 -0.0006 6 6 4.3103 0.1174 -0.1171 7 6 5.6877 0.2434 -0.1069 8 6 6.5628 -0.9780 -0.2231 9 6 6.2559 1.5004 0.0052 10 7 5.5083 2.5815 0.1075 11 6 4.1865 2.5176 0.1086 12 7 3.4395 3.6821 0.2190 13 6 4.0564 4.8602 0.4373 14 8 5.2641 4.9030 0.5368 15 6 3.2452 6.1246 0.5578 16 6 4.1672 7.2920 0.7987 17 1 5.2340 7.1342 0.8582 18 6 3.6491 8.5616 0.9422 19 7 2.3501 8.7538 0.8692 20 14 4.7919 10.0085 1.2415 21 1 6.1970 9.5295 1.2816 22 1 4.6374 10.9967 0.1439 23 1 4.4500 10.6497 2.5366 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.8440 -0.8526 -0.2079 28 1 6.7791 -1.3661 0.7722 29 1 6.0467 -1.7406 -0.8062 30 1 7.4957 -0.7106 -0.7194 31 1 7.3315 1.5975 0.0086 32 1 2.4735 3.6479 0.1390 33 1 2.6862 6.2868 -0.3637 34 1 2.5505 6.0324 1.3927 35 1 1.9855 9.6469 0.9705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:15 Heat of formation + Delta-G solvation = -73.754174 kcal Electronic energy + Delta-G solvation = -21073.659945 eV Core-core repulsion = 17651.584377 eV Total energy + Delta-G solvation = -3422.075568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18767 -39.83798 -38.48115 -36.71936 -34.61208 -33.07287 -32.87527 -31.84800 -29.06288 -27.93677 -26.65020 -24.77092 -23.98368 -22.56544 -21.06800 -19.73276 -17.89591 -17.79026 -17.14816 -16.57110 -16.46198 -16.00491 -15.27442 -14.93661 -14.44407 -14.37419 -14.15050 -13.92604 -13.45678 -13.11535 -12.87076 -12.79972 -12.77362 -12.43189 -12.15289 -12.03634 -11.29115 -11.01560 -10.75500 -10.70422 -10.68016 -10.17845 -9.97086 -9.91963 -9.65337 -9.26039 -8.44887 -8.43281 -8.00379 -6.04841 -4.05121 0.52030 1.26495 2.41737 2.48375 3.35167 3.39312 3.42725 3.47247 3.53058 4.04108 4.36939 4.48756 4.63253 4.65174 4.84934 4.91820 5.01299 5.03443 5.08035 5.33339 5.34841 5.45139 5.58123 5.63324 5.76444 5.99763 6.07530 6.25643 6.48527 6.95246 7.17872 7.30181 7.52600 7.67081 7.96760 8.13570 8.42725 9.05447 9.09715 9.59784 11.07538 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.004617 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.780128 B = 6062.558762 C = 7442.830472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.524 3.476 4 O -0.509 6.509 5 C -0.244 4.244 6 C 0.013 3.987 7 C -0.209 4.209 8 C -0.098 4.098 9 C 0.180 3.820 10 N -0.479 5.479 11 C 0.437 3.563 12 N -0.660 5.660 13 C 0.498 3.502 14 O -0.471 6.471 15 C 0.008 3.992 16 C -0.509 4.509 17 H 0.077 0.923 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.147 0.853 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.428 0.572 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -22.877 -2.691 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.371 3.629 4 O -0.398 6.398 5 C -0.252 4.252 6 C -0.013 4.013 7 C -0.213 4.213 8 C -0.156 4.156 9 C 0.018 3.982 10 N -0.193 5.193 11 C 0.202 3.798 12 N -0.315 5.315 13 C 0.287 3.713 14 O -0.339 6.339 15 C -0.031 4.031 16 C -0.548 4.548 17 H 0.096 0.904 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.164 0.836 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.180 0.820 32 H 0.277 0.723 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.580 -21.385 -2.512 21.539 hybrid contribution -0.719 0.011 0.041 0.720 sum -0.139 -21.373 -2.470 21.516 Atomic orbital electron populations 1.23320 0.75699 1.03735 1.03060 1.86526 1.23774 1.32149 1.84478 1.20844 0.88369 0.81529 0.72166 1.90567 1.66313 1.35412 1.47550 1.19402 0.89916 0.94514 1.21326 1.21477 0.92775 0.97343 0.89679 1.20720 0.94371 0.97180 1.09045 1.20580 0.98549 0.94232 1.02191 1.23017 1.00378 0.86523 0.88275 1.68097 1.03169 1.31263 1.16766 1.18787 0.88490 0.85492 0.87026 1.45351 1.13208 1.05081 1.67860 1.22577 0.89921 0.84551 0.74215 1.90630 1.14689 1.85430 1.43177 1.19299 0.96278 0.87710 0.99853 1.21182 0.94337 0.90447 1.48789 0.90445 1.25012 0.95251 0.99090 0.95228 1.69979 1.11053 1.22319 1.50528 0.86344 0.81180 0.81790 0.77641 1.19406 1.20987 1.20993 0.91519 0.91570 0.87982 0.83575 0.91332 0.91613 0.91322 0.81993 0.72305 0.92978 0.93013 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -3.98 9.90 -40.65 -0.40 -4.38 16 3 C 0.52 7.52 7.88 34.45 0.27 7.79 16 4 O -0.51 -8.45 13.46 -19.28 -0.26 -8.71 16 5 C -0.24 -3.61 5.90 -104.67 -0.62 -4.23 16 6 C 0.01 0.15 9.40 -38.88 -0.37 -0.22 16 7 C -0.21 -2.26 5.89 -104.53 -0.62 -2.88 16 8 C -0.10 -0.68 10.03 36.01 0.36 -0.32 16 9 C 0.18 2.46 10.84 -17.48 -0.19 2.27 16 10 N -0.48 -9.04 7.88 -12.11 -0.10 -9.13 16 11 C 0.44 8.13 7.43 -154.80 -1.15 6.98 16 12 N -0.66 -13.67 5.26 -11.24 -0.06 -13.73 16 13 C 0.50 12.25 7.78 -10.99 -0.09 12.16 16 14 O -0.47 -12.73 13.72 5.57 0.08 -12.66 16 15 C 0.01 0.21 5.46 -29.04 -0.16 0.05 16 16 C -0.51 -15.08 8.92 -34.44 -0.31 -15.39 16 17 H 0.08 2.38 6.75 -52.49 -0.35 2.02 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.15 1.23 7.71 -52.48 -0.40 0.83 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.43 8.36 5.21 -40.92 -0.21 8.15 16 33 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 1.39 8.14 -51.92 -0.42 0.97 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -35.15 310.98 -6.13 -41.29 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.91 Total: 2.24 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -1.89 Total: 9.09 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.58 Total: -48.98 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.59 Total: -25.74 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.15 -6.13 -41.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.469 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds