Wall clock time and date at job start Tue Mar 31 2020 01:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 116.99635 * 2 1 4 4 O 1.21518 * 119.99751 * 0.02562 * 3 2 1 5 5 C 1.47374 * 120.00135 * 180.02562 * 3 2 1 6 6 C 1.40039 * 120.60595 * 5.52032 * 5 3 2 7 7 C 1.38317 * 118.34868 * 180.25872 * 6 5 3 8 8 C 1.50704 * 120.25391 * 179.71567 * 7 6 5 9 9 C 1.38398 * 119.49017 * 359.44723 * 7 6 5 10 10 N 1.31850 * 121.20994 * 0.24705 * 9 7 6 11 11 C 1.32332 * 121.79369 * 0.03175 * 10 9 7 12 12 N 1.38782 * 119.81235 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00036 * 354.42998 * 12 11 10 14 14 O 1.21261 * 120.00199 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00132 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.47558 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99912 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00551 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99929 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00342 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47321 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47051 * 120.00573 * 20 18 16 23 23 H 1.48500 * 109.47364 * 240.00319 * 20 18 16 24 24 H 1.08992 * 109.47503 * 299.99809 * 1 2 3 25 25 H 1.08993 * 109.47199 * 60.00467 * 1 2 3 26 26 H 1.09007 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.82741 * 359.97438 * 6 5 3 28 28 H 1.08998 * 109.47559 * 269.72584 * 8 7 6 29 29 H 1.08998 * 109.47213 * 29.72889 * 8 7 6 30 30 H 1.09007 * 109.47096 * 149.72556 * 8 7 6 31 31 H 1.07997 * 119.39911 * 180.27313 * 9 7 6 32 32 H 0.96995 * 119.99525 * 174.42923 * 12 11 10 33 33 H 1.08997 * 109.47131 * 300.00493 * 15 13 12 34 34 H 1.09008 * 109.47051 * 60.00175 * 15 13 12 35 35 H 0.96999 * 120.00231 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4018 2.2198 0.0005 5 6 3.5354 1.2780 -0.0006 6 6 4.3103 0.1174 -0.1171 7 6 5.6877 0.2434 -0.1069 8 6 6.5628 -0.9780 -0.2231 9 6 6.2559 1.5004 0.0052 10 7 5.5083 2.5815 0.1075 11 6 4.1865 2.5176 0.1086 12 7 3.4395 3.6821 0.2190 13 6 4.0564 4.8602 0.4373 14 8 5.2641 4.9030 0.5368 15 6 3.2452 6.1246 0.5578 16 6 4.1672 7.2920 0.7987 17 1 5.2340 7.1342 0.8582 18 6 3.6491 8.5616 0.9422 19 7 2.3501 8.7538 0.8692 20 14 4.7919 10.0085 1.2415 21 1 6.1970 9.5295 1.2816 22 1 4.6374 10.9967 0.1439 23 1 4.4500 10.6497 2.5366 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.8440 -0.8526 -0.2079 28 1 6.7791 -1.3661 0.7722 29 1 6.0467 -1.7406 -0.8062 30 1 7.4957 -0.7106 -0.7194 31 1 7.3315 1.5975 0.0086 32 1 2.4735 3.6479 0.1390 33 1 2.6862 6.2868 -0.3637 34 1 2.5505 6.0324 1.3927 35 1 1.9855 9.6469 0.9705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:13 Heat of formation + Delta-G solvation = -97.310514 kcal Electronic energy + Delta-G solvation = -21074.681425 eV Core-core repulsion = 17651.584377 eV Total energy + Delta-G solvation = -3423.097048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.40134 -41.02380 -40.07018 -37.80687 -36.04857 -35.15316 -34.18683 -33.02245 -31.08573 -28.72301 -27.75792 -25.90985 -25.74442 -23.95782 -22.16944 -21.36649 -19.22026 -18.90983 -18.53117 -18.17626 -17.75494 -17.56498 -16.78029 -16.51320 -16.26433 -15.57704 -15.22930 -15.13862 -14.71765 -14.35050 -14.25916 -14.05884 -13.82369 -13.64298 -13.23279 -13.07679 -12.83097 -12.78638 -12.63072 -12.09445 -11.89733 -11.80836 -11.63660 -11.49314 -11.15042 -11.01777 -10.66679 -10.06490 -9.26479 -8.28755 -6.37911 -0.61428 0.17028 1.31549 1.38898 1.39383 1.49329 1.55122 1.75457 1.95351 2.41453 2.75399 3.06270 3.30802 3.53590 3.64054 3.88436 4.01683 4.23558 4.27489 4.35132 4.37428 4.68540 4.73701 4.79559 4.94731 4.98285 5.07199 5.12358 5.18665 5.26924 5.39805 5.63374 5.71699 5.93536 6.25239 6.50194 6.73883 6.94801 7.25916 7.37454 8.84156 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.004617 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.780128 B = 6062.558762 C = 7442.830472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.526 3.474 4 O -0.538 6.538 5 C -0.238 4.238 6 C 0.020 3.980 7 C -0.177 4.177 8 C -0.097 4.097 9 C 0.160 3.840 10 N -0.527 5.527 11 C 0.395 3.605 12 N -0.660 5.660 13 C 0.506 3.494 14 O -0.507 6.507 15 C 0.012 3.988 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.143 0.857 27 H 0.187 0.813 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.186 0.814 32 H 0.430 0.570 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -25.726 -2.899 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C 0.373 3.627 4 O -0.430 6.430 5 C -0.246 4.246 6 C -0.005 4.005 7 C -0.181 4.181 8 C -0.154 4.154 9 C 0.000 4.000 10 N -0.242 5.242 11 C 0.162 3.838 12 N -0.317 5.317 13 C 0.294 3.706 14 O -0.378 6.378 15 C -0.028 4.028 16 C -0.575 4.575 17 H 0.078 0.922 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.204 0.796 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.203 0.797 32 H 0.280 0.720 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.167 -24.332 -2.732 24.513 hybrid contribution -0.932 0.624 0.076 1.124 sum 0.235 -23.708 -2.656 23.857 Atomic orbital electron populations 1.23687 0.73749 1.06322 1.02819 1.86513 1.25520 1.29985 1.83628 1.20860 0.88291 0.82014 0.71523 1.90548 1.66867 1.36654 1.48932 1.19528 0.90629 0.94141 1.20287 1.21970 0.92843 0.97580 0.88150 1.21196 0.94750 0.97553 1.04599 1.20730 0.98440 0.92494 1.03750 1.23536 1.01221 0.86690 0.88508 1.67906 1.03891 1.34411 1.17982 1.18901 0.88911 0.85618 0.90358 1.44875 1.13275 1.05047 1.68480 1.21960 0.89126 0.85298 0.74166 1.90587 1.15579 1.86247 1.45372 1.19108 0.95908 0.88932 0.98830 1.21346 0.93940 0.92134 1.50121 0.92208 1.25873 0.96961 1.01689 0.94438 1.70063 1.12529 1.23424 1.50482 0.85290 0.78631 0.78151 0.78312 1.19743 1.19581 1.19572 0.91979 0.91739 0.83914 0.79552 0.89680 0.89337 0.90000 0.79743 0.72034 0.93999 0.94025 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.34 -6.85 9.90 -56.71 -0.56 -7.41 16 3 C 0.53 14.70 7.88 70.23 0.55 15.25 16 4 O -0.54 -18.27 13.46 19.78 0.27 -18.00 16 5 C -0.24 -6.88 5.90 -19.90 -0.12 -6.99 16 6 C 0.02 0.39 9.40 22.73 0.21 0.60 16 7 C -0.18 -3.27 5.89 -19.81 -0.12 -3.38 16 8 C -0.10 -0.86 10.03 71.24 0.71 -0.14 16 9 C 0.16 4.19 10.84 84.73 0.92 5.11 16 10 N -0.53 -20.42 7.88 -192.22 -1.51 -21.93 16 11 C 0.39 15.15 7.43 133.48 0.99 16.14 16 12 N -0.66 -28.99 5.26 -307.87 -1.62 -30.61 16 13 C 0.51 26.50 7.78 87.66 0.68 27.18 16 14 O -0.51 -29.02 13.72 -2.97 -0.04 -29.06 16 15 C 0.01 0.66 5.46 29.10 0.16 0.82 16 16 C -0.54 -33.26 8.92 25.60 0.23 -33.04 16 17 H 0.06 3.85 6.75 -2.91 -0.02 3.83 16 18 C 0.01 0.54 5.46 84.65 0.46 1.00 16 19 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 20 Si 0.97 46.72 29.54 68.60 2.03 48.75 16 21 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.14 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.19 2.14 7.71 -2.91 -0.02 2.12 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.48 8.09 -2.39 -0.02 0.46 16 30 H 0.08 0.59 8.09 -2.38 -0.02 0.57 16 31 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.43 17.91 5.21 -94.25 -0.49 17.42 16 33 H 0.04 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.04 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -80.69 310.98 5.37 -75.32 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.64 Total: 14.82 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 5.89 Total: 24.13 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -2.85 Total: -108.55 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.34 Total: -54.47 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -80.69 5.37 -75.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.988 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds