Wall clock time and date at job start Tue Mar 31 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47229 * 274.64271 * 3 2 1 5 5 H 1.48497 * 109.47198 * 34.65174 * 3 2 1 6 6 H 1.48502 * 109.46720 * 154.64842 * 3 2 1 7 7 C 1.40023 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99981 * 197.06558 * 7 2 1 9 9 C 1.41556 * 120.00133 * 17.06231 * 7 2 1 10 10 C 1.41183 * 120.99136 * 23.48546 * 9 7 2 11 11 C 1.36553 * 119.14376 * 180.25068 * 10 9 7 12 12 N 1.32101 * 121.27055 * 359.76926 * 11 10 9 13 13 C 1.32524 * 122.21582 * 359.97438 * 12 11 10 14 14 N 1.39081 * 119.65814 * 180.02562 * 13 12 11 15 15 C 1.46505 * 120.00235 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47398 * 180.02562 * 15 14 13 17 17 O 1.20756 * 119.99803 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00116 * 179.97438 * 16 15 14 19 19 C 1.52993 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47221 * 180.02562 * 19 18 16 21 21 O 1.20829 * 120.00047 * 0.02562 * 20 19 18 22 22 O 1.34232 * 120.00204 * 180.02562 * 20 19 18 23 23 C 1.38745 * 120.68531 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99291 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.43179 * 0.04034 * 10 9 7 26 26 H 1.08008 * 119.36698 * 179.79149 * 11 10 9 27 27 H 0.97000 * 120.00175 * 359.97438 * 14 13 12 28 28 H 1.09009 * 109.46683 * 299.99750 * 15 14 13 29 29 H 1.08996 * 109.47361 * 59.99388 * 15 14 13 30 30 H 1.08999 * 109.47253 * 299.99907 * 18 16 15 31 31 H 1.09007 * 109.47055 * 59.99622 * 18 16 15 32 32 H 1.08999 * 109.47431 * 300.00411 * 19 18 16 33 33 H 1.09007 * 109.46914 * 60.00148 * 19 18 16 34 34 H 0.96693 * 117.00305 * 179.97438 * 22 20 19 35 35 H 1.08004 * 120.66698 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3909 2.1031 -1.3955 5 1 1.4916 2.6223 0.7960 6 1 3.5847 1.4136 0.5995 7 6 2.0075 -1.2127 0.0005 8 1 3.0519 -1.2332 0.2750 9 6 1.3464 -2.4118 -0.3586 10 6 0.1893 -2.3898 -1.1673 11 6 -0.4213 -3.5687 -1.4866 12 7 0.0526 -4.7247 -1.0574 13 6 1.1372 -4.8063 -0.3003 14 7 1.5900 -6.0519 0.1215 15 6 2.7885 -6.1509 0.9582 16 6 3.0628 -7.5988 1.2736 17 8 2.3323 -8.4591 0.8442 18 6 4.2487 -7.9729 2.1248 19 6 4.2975 -9.4930 2.2916 20 6 5.4831 -9.8671 3.1433 21 8 6.2138 -9.0062 3.5732 22 8 5.7273 -11.1567 3.4243 23 6 1.8264 -3.6621 0.0751 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2097 -1.4525 -1.5259 26 1 -1.3087 -3.5559 -2.1022 27 1 1.1122 -6.8551 -0.1383 28 1 3.6399 -5.7280 0.4247 29 1 2.6308 -5.6002 1.8854 30 1 5.1644 -7.6304 1.6428 31 1 4.1559 -7.5031 3.1040 32 1 3.3818 -9.8352 2.7737 33 1 4.3902 -9.9631 1.3125 34 1 6.4996 -11.3476 3.9740 35 1 2.7101 -3.7289 0.6924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160874581.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:36 Heat of formation + Delta-G solvation = -103.973029 kcal Electronic energy + Delta-G solvation = -20056.877082 eV Core-core repulsion = 16633.491126 eV Total energy + Delta-G solvation = -3423.385956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71075 -39.73538 -38.32524 -36.55162 -34.93383 -33.74660 -33.43544 -30.64544 -29.44203 -27.44025 -25.89470 -25.16211 -21.85904 -21.29608 -20.70390 -19.62018 -18.46351 -17.75599 -17.09727 -16.75090 -16.19127 -15.58073 -15.51930 -15.19303 -14.52563 -14.42283 -14.00997 -13.82147 -13.45606 -13.18141 -13.00266 -12.68793 -12.39739 -12.21397 -12.03794 -11.90942 -11.63311 -11.38829 -11.20179 -10.95918 -10.88644 -10.29169 -9.85011 -9.81333 -9.45488 -9.02386 -7.98151 -7.91084 -6.85361 -6.51297 -4.57421 1.77116 1.83811 2.58987 2.78426 3.02552 3.05377 3.07049 3.34577 3.65419 3.86895 4.22809 4.24813 4.62996 4.69735 4.94155 5.09038 5.28408 5.34852 5.52406 5.57187 5.60479 5.81759 6.09817 6.12576 6.69735 6.87540 6.88871 6.98611 7.24245 7.30197 7.51052 7.53864 7.81343 8.03394 8.05585 8.42918 8.68342 8.81652 8.88380 9.76835 10.09744 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.003129 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.133419 B = 8945.584724 C =10018.611926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.156 3.844 10 C -0.245 4.245 11 C 0.117 3.883 12 N -0.622 5.622 13 C 0.398 3.602 14 N -0.741 5.741 15 C 0.092 3.908 16 C 0.355 3.645 17 O -0.449 6.449 18 C -0.159 4.159 19 C -0.106 4.106 20 C 0.480 3.520 21 O -0.516 6.516 22 O -0.517 6.517 23 C -0.338 4.338 24 H 0.282 0.718 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.399 0.601 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.411 0.589 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 -12.721 5.394 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.148 3.852 10 C -0.269 4.269 11 C -0.032 4.032 12 N -0.346 5.346 13 C 0.168 3.832 14 N -0.381 5.381 15 C -0.034 4.034 16 C 0.230 3.770 17 O -0.322 6.322 18 C -0.197 4.197 19 C -0.144 4.144 20 C 0.323 3.677 21 O -0.404 6.404 22 O -0.329 6.329 23 C -0.365 4.365 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.235 0.765 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.270 0.730 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.012 -13.401 4.903 16.365 hybrid contribution 1.185 1.284 0.654 1.865 sum 9.197 -12.117 5.557 16.195 Atomic orbital electron populations 1.69812 1.07719 1.29411 1.33839 1.25977 0.94739 1.01499 0.91916 0.86256 0.80584 0.80390 0.79249 1.19224 1.20202 1.18463 1.19601 0.97897 0.90846 1.40355 0.90183 1.17600 0.89891 0.91624 0.86121 1.21797 1.01489 0.98130 1.05528 1.21372 0.97277 0.87798 0.96779 1.66723 1.16392 1.29868 1.21576 1.17865 0.90233 0.84135 0.90975 1.43838 1.29677 1.06440 1.58138 1.21372 0.90794 0.94015 0.97263 1.24742 0.83984 0.91229 0.77010 1.90398 1.45658 1.52107 1.44029 1.21904 0.99741 0.94887 1.03167 1.21134 0.95294 0.96980 1.00990 1.23493 0.85984 0.79840 0.78377 1.90754 1.48571 1.50411 1.50636 1.84542 1.51500 1.29119 1.67776 1.21124 1.07394 0.92210 1.15790 0.90694 0.85871 0.86356 0.76460 0.89020 0.88950 0.86931 0.86915 0.86842 0.86846 0.73044 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.79 10.91 55.55 0.61 -19.19 16 2 C 0.08 1.92 5.20 -17.34 -0.09 1.83 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.83 9.12 -37.65 -0.34 -12.17 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.16 4.15 5.61 -106.55 -0.60 3.55 16 10 C -0.24 -6.42 8.74 -39.07 -0.34 -6.76 16 11 C 0.12 2.89 11.10 -18.04 -0.20 2.69 16 12 N -0.62 -15.52 10.37 -12.82 -0.13 -15.65 16 13 C 0.40 9.36 7.65 -154.98 -1.19 8.17 16 14 N -0.74 -14.08 5.70 -61.65 -0.35 -14.43 16 15 C 0.09 1.29 5.31 -5.19 -0.03 1.26 16 16 C 0.36 4.07 7.23 -29.04 -0.21 3.86 16 17 O -0.45 -6.34 15.29 6.00 0.09 -6.25 16 18 C -0.16 -1.32 4.93 -27.89 -0.14 -1.45 16 19 C -0.11 -0.82 5.10 -27.89 -0.14 -0.96 16 20 C 0.48 4.03 8.33 36.00 0.30 4.33 16 21 O -0.52 -5.84 16.74 -18.75 -0.31 -6.15 16 22 O -0.52 -3.33 13.42 -39.26 -0.53 -3.86 16 23 C -0.34 -8.24 9.12 -38.43 -0.35 -8.59 16 24 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 25 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 26 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 27 H 0.40 7.60 7.56 -40.82 -0.31 7.29 16 28 H 0.09 1.20 7.93 -51.92 -0.41 0.79 16 29 H 0.09 1.24 7.93 -51.93 -0.41 0.82 16 30 H 0.11 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.11 0.82 8.10 -51.93 -0.42 0.39 16 34 H 0.41 0.96 9.10 45.56 0.41 1.37 16 35 H 0.10 2.15 6.71 -52.48 -0.35 1.80 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -32.73 312.84 -7.32 -40.04 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.05 Total: 11.95 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.33 Total: -4.24 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.12 Total: -49.27 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.75 Total: -16.26 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.73 -7.32 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160874581.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.930 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds