Wall clock time and date at job start Tue Mar 31 2020 00:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47229 * 274.64271 * 3 2 1 5 5 H 1.48497 * 109.47198 * 34.65174 * 3 2 1 6 6 H 1.48502 * 109.46720 * 154.64842 * 3 2 1 7 7 C 1.40023 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99981 * 197.06558 * 7 2 1 9 9 C 1.41556 * 120.00133 * 17.06231 * 7 2 1 10 10 C 1.41183 * 120.99136 * 23.48546 * 9 7 2 11 11 C 1.36553 * 119.14376 * 180.25068 * 10 9 7 12 12 N 1.32101 * 121.27055 * 359.76926 * 11 10 9 13 13 C 1.32524 * 122.21582 * 359.97438 * 12 11 10 14 14 N 1.39081 * 119.65814 * 180.02562 * 13 12 11 15 15 C 1.46505 * 120.00235 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47398 * 180.02562 * 15 14 13 17 17 O 1.20756 * 119.99803 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00116 * 179.97438 * 16 15 14 19 19 C 1.52993 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47221 * 180.02562 * 19 18 16 21 21 O 1.20829 * 120.00047 * 0.02562 * 20 19 18 22 22 O 1.34232 * 120.00204 * 180.02562 * 20 19 18 23 23 C 1.38745 * 120.68531 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99291 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.43179 * 0.04034 * 10 9 7 26 26 H 1.08008 * 119.36698 * 179.79149 * 11 10 9 27 27 H 0.97000 * 120.00175 * 359.97438 * 14 13 12 28 28 H 1.09009 * 109.46683 * 299.99750 * 15 14 13 29 29 H 1.08996 * 109.47361 * 59.99388 * 15 14 13 30 30 H 1.08999 * 109.47253 * 299.99907 * 18 16 15 31 31 H 1.09007 * 109.47055 * 59.99622 * 18 16 15 32 32 H 1.08999 * 109.47431 * 300.00411 * 19 18 16 33 33 H 1.09007 * 109.46914 * 60.00148 * 19 18 16 34 34 H 0.96693 * 117.00305 * 179.97438 * 22 20 19 35 35 H 1.08004 * 120.66698 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3909 2.1031 -1.3955 5 1 1.4916 2.6223 0.7960 6 1 3.5847 1.4136 0.5995 7 6 2.0075 -1.2127 0.0005 8 1 3.0519 -1.2332 0.2750 9 6 1.3464 -2.4118 -0.3586 10 6 0.1893 -2.3898 -1.1673 11 6 -0.4213 -3.5687 -1.4866 12 7 0.0526 -4.7247 -1.0574 13 6 1.1372 -4.8063 -0.3003 14 7 1.5900 -6.0519 0.1215 15 6 2.7885 -6.1509 0.9582 16 6 3.0628 -7.5988 1.2736 17 8 2.3323 -8.4591 0.8442 18 6 4.2487 -7.9729 2.1248 19 6 4.2975 -9.4930 2.2916 20 6 5.4831 -9.8671 3.1433 21 8 6.2138 -9.0062 3.5732 22 8 5.7273 -11.1567 3.4243 23 6 1.8264 -3.6621 0.0751 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2097 -1.4525 -1.5259 26 1 -1.3087 -3.5559 -2.1022 27 1 1.1122 -6.8551 -0.1383 28 1 3.6399 -5.7280 0.4247 29 1 2.6308 -5.6002 1.8854 30 1 5.1644 -7.6304 1.6428 31 1 4.1559 -7.5031 3.1040 32 1 3.3818 -9.8352 2.7737 33 1 4.3902 -9.9631 1.3125 34 1 6.4996 -11.3476 3.9740 35 1 2.7101 -3.7289 0.6924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160874581.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:35 Heat of formation + Delta-G solvation = -126.256788 kcal Electronic energy + Delta-G solvation = -20057.843378 eV Core-core repulsion = 16633.491126 eV Total energy + Delta-G solvation = -3424.352252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43248 -40.76666 -40.06649 -37.16131 -36.57500 -35.50220 -34.16383 -32.55024 -30.90451 -28.75580 -27.80644 -26.22373 -23.40599 -22.75442 -22.00492 -20.57213 -19.54082 -19.05485 -18.19978 -17.46217 -17.44592 -17.10134 -16.64561 -16.48866 -16.08407 -15.74554 -15.57409 -15.05561 -14.73461 -14.26217 -14.23587 -14.15838 -13.99301 -13.50683 -13.09041 -12.95352 -12.85629 -12.71419 -12.53942 -12.25914 -11.95358 -11.73203 -11.65072 -11.25291 -10.82449 -10.71842 -9.92287 -9.83149 -8.69098 -8.27154 -6.53297 0.83931 0.98716 1.19190 1.20678 1.41833 1.55807 1.62683 1.96681 2.20899 2.46646 2.82522 3.08966 3.57437 3.83266 4.04252 4.19867 4.25744 4.42728 4.46336 4.51053 4.65082 4.78968 4.89620 4.93257 5.00029 5.06897 5.14834 5.32816 5.62376 5.63290 5.91609 6.11239 6.29116 6.42324 6.56119 6.87657 6.89780 7.00022 7.01794 7.88596 8.28615 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.003129 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.133419 B = 8945.584724 C =10018.611926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.271 4.271 11 C 0.115 3.885 12 N -0.640 5.640 13 C 0.397 3.603 14 N -0.736 5.736 15 C 0.079 3.921 16 C 0.372 3.628 17 O -0.476 6.476 18 C -0.149 4.149 19 C -0.106 4.106 20 C 0.490 3.510 21 O -0.548 6.548 22 O -0.515 6.515 23 C -0.352 4.352 24 H 0.291 0.709 25 H 0.112 0.888 26 H 0.142 0.858 27 H 0.399 0.601 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.429 0.571 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.454 -12.930 6.147 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.119 3.881 10 C -0.295 4.295 11 C -0.034 4.034 12 N -0.364 5.364 13 C 0.165 3.835 14 N -0.374 5.374 15 C -0.046 4.046 16 C 0.249 3.751 17 O -0.351 6.351 18 C -0.186 4.186 19 C -0.143 4.143 20 C 0.334 3.666 21 O -0.439 6.439 22 O -0.329 6.329 23 C -0.379 4.379 24 H 0.102 0.898 25 H 0.130 0.870 26 H 0.159 0.841 27 H 0.235 0.765 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.291 0.709 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.431 -13.674 5.686 17.557 hybrid contribution 0.738 1.228 0.450 1.502 sum 10.169 -12.447 6.136 17.204 Atomic orbital electron populations 1.69861 1.09275 1.30963 1.33681 1.26890 0.95493 1.04826 0.90768 0.85101 0.79214 0.75429 0.79427 1.18731 1.19220 1.17777 1.19900 0.98308 0.91767 1.41530 0.89771 1.18024 0.90482 0.92969 0.86665 1.21779 1.02513 0.98185 1.07069 1.21720 0.97722 0.87477 0.96495 1.66851 1.17287 1.29771 1.22516 1.18145 0.89610 0.85649 0.90114 1.43972 1.30755 1.04761 1.57910 1.21754 0.89254 0.96559 0.97043 1.24760 0.84393 0.89440 0.76552 1.90405 1.46943 1.52334 1.45420 1.21836 0.98251 0.95605 1.02941 1.21132 0.95366 0.96472 1.01365 1.23481 0.85502 0.79960 0.77683 1.90750 1.49754 1.51327 1.52077 1.84502 1.52521 1.27948 1.67929 1.21286 1.08290 0.91855 1.16455 0.89784 0.87034 0.84080 0.76519 0.87690 0.87978 0.85591 0.85712 0.86296 0.86213 0.70939 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.46 10.91 21.84 0.24 -41.22 16 2 C 0.04 1.83 5.20 85.29 0.44 2.28 16 3 Si 0.99 36.50 29.59 68.60 2.03 38.53 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 6 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.48 -25.38 9.12 23.52 0.21 -25.16 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.13 6.87 5.61 -21.12 -0.12 6.75 16 10 C -0.27 -14.54 8.74 22.60 0.20 -14.34 16 11 C 0.12 5.77 11.10 84.26 0.94 6.71 16 12 N -0.64 -32.06 10.37 -194.47 -2.02 -34.07 16 13 C 0.40 18.62 7.65 132.91 1.02 19.63 16 14 N -0.74 -27.43 5.70 -348.96 -1.99 -29.42 16 15 C 0.08 2.09 5.31 85.63 0.45 2.55 16 16 C 0.37 7.87 7.23 29.10 0.21 8.08 16 17 O -0.48 -12.82 15.29 -1.44 -0.02 -12.84 16 18 C -0.15 -2.11 4.93 29.85 0.15 -1.96 16 19 C -0.11 -1.39 5.10 29.85 0.15 -1.24 16 20 C 0.49 7.21 8.33 71.24 0.59 7.81 16 21 O -0.55 -11.44 16.74 21.95 0.37 -11.08 16 22 O -0.52 -5.48 13.42 -51.43 -0.69 -6.17 16 23 C -0.35 -17.21 9.12 23.01 0.21 -17.00 16 24 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 25 H 0.11 6.13 6.18 -2.91 -0.02 6.12 16 26 H 0.14 6.17 8.06 -2.91 -0.02 6.14 16 27 H 0.40 14.95 7.56 -92.71 -0.70 14.25 16 28 H 0.11 2.56 7.93 -2.38 -0.02 2.54 16 29 H 0.10 2.56 7.93 -2.39 -0.02 2.54 16 30 H 0.13 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.12 1.56 8.10 -2.38 -0.02 1.54 16 32 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.12 1.46 8.10 -2.38 -0.02 1.44 16 34 H 0.43 1.06 9.10 -74.06 -0.67 0.39 16 35 H 0.12 5.04 6.71 -2.91 -0.02 5.02 16 Total: -1.00 -70.52 312.84 2.15 -68.37 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.22 Total: 33.84 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.46 Total: -5.92 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -3.77 Total: -104.72 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.34 Total: -30.09 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -70.52 2.15 -68.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160874581.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.889 kcal (2) G-P(sol) polarization free energy of solvation -70.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds