Wall clock time and date at job start Mon Mar 30 2020 23:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29491 * 1 3 3 Si 1.86797 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47154 * 268.56502 * 3 2 1 5 5 H 1.48499 * 109.46942 * 28.56513 * 3 2 1 6 6 H 1.48502 * 109.47156 * 148.56380 * 3 2 1 7 7 C 1.46591 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00434 * 350.71064 * 7 2 1 9 9 C 1.39524 * 119.99802 * 170.71357 * 7 2 1 10 10 C 1.41753 * 120.18066 * 324.15842 * 9 7 2 11 11 C 1.35800 * 119.79859 * 179.69896 * 10 9 7 12 12 C 1.40179 * 120.19366 * 0.55746 * 11 10 9 13 13 N 1.37655 * 119.81791 * 179.71791 * 12 11 10 14 14 C 1.46501 * 119.99526 * 359.72309 * 13 12 11 15 15 C 1.53004 * 109.47045 * 180.02562 * 14 13 12 16 16 C 1.54037 * 113.81571 * 273.50722 * 15 14 13 17 17 O 1.44448 * 85.42388 * 223.23639 * 16 15 14 18 18 C 1.44177 * 93.37924 * 24.09265 * 17 16 15 19 19 C 1.40149 * 120.37400 * 359.44050 * 12 11 10 20 20 C 1.35830 * 120.19346 * 0.27633 * 19 12 11 21 21 N 1.48012 * 120.10017 * 179.97438 * 20 19 12 22 22 O 1.31706 * 119.99952 * 353.82053 * 21 20 19 23 23 O 1.31700 * 120.00169 * 173.82025 * 21 20 19 24 24 H 0.96997 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.10148 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.90612 * 180.27340 * 11 10 9 27 27 H 0.96999 * 120.00796 * 179.44991 * 13 12 11 28 28 H 1.09000 * 109.47595 * 300.00110 * 14 13 12 29 29 H 1.08998 * 109.47127 * 60.00622 * 14 13 12 30 30 H 1.09000 * 112.99729 * 45.33746 * 15 14 13 31 31 H 1.08998 * 113.86537 * 337.34466 * 16 15 14 32 32 H 1.08997 * 113.86421 * 109.04714 * 16 15 14 33 33 H 1.09000 * 113.85946 * 221.77005 * 18 17 16 34 34 H 1.08993 * 113.98869 * 90.07641 * 18 17 16 35 35 H 1.08004 * 119.90428 * 180.29918 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 2.5067 2.0289 -1.3996 5 1 1.4114 2.6612 0.6695 6 1 3.5109 1.4492 0.7302 7 6 2.0279 -1.2695 -0.0006 8 1 1.4986 -2.1988 0.1500 9 6 3.4094 -1.2773 -0.1956 10 6 4.0091 -0.3487 -1.0830 11 6 5.3551 -0.3591 -1.2623 12 6 6.1498 -1.2921 -0.5818 13 7 7.5129 -1.2996 -0.7738 14 6 8.1285 -0.3381 -1.6919 15 6 9.6421 -0.5593 -1.7224 16 6 10.4039 0.1988 -0.6189 17 8 11.3534 0.5232 -1.6580 18 6 10.3848 0.3572 -2.7130 19 6 5.5650 -2.2137 0.2974 20 6 4.2209 -2.2133 0.4927 21 7 3.6054 -3.1878 1.4213 22 8 4.3419 -4.1342 1.9658 23 8 2.3213 -3.1086 1.7030 24 1 -0.4850 0.8400 0.0004 25 1 3.3979 0.3683 -1.6109 26 1 5.8143 0.3505 -1.9347 27 1 8.0663 -1.9387 -0.2982 28 1 7.7208 -0.4792 -2.6929 29 1 7.9159 0.6757 -1.3525 30 1 9.9173 -1.6108 -1.8045 31 1 9.8674 1.0626 -0.2263 32 1 10.8062 -0.4464 0.1622 33 1 10.7720 -0.1627 -3.5892 34 1 9.8415 1.2684 -2.9631 35 1 6.1851 -2.9260 0.8214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161949162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:52 Heat of formation + Delta-G solvation = 30.839885 kcal Electronic energy + Delta-G solvation = -21022.500856 eV Core-core repulsion = 17604.960826 eV Total energy + Delta-G solvation = -3417.540029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62727 -38.94540 -36.80370 -35.46508 -34.01781 -32.50887 -31.47653 -30.58951 -29.28371 -26.81158 -26.26233 -24.38333 -23.82709 -22.03720 -20.48806 -20.08752 -18.33401 -17.38773 -16.81840 -16.51002 -16.06117 -15.90490 -15.74873 -14.93994 -14.58938 -14.35766 -14.16806 -13.95591 -13.58470 -13.15928 -13.00575 -12.85372 -12.50385 -12.04965 -11.72672 -11.43710 -11.14222 -10.91900 -10.86654 -10.81681 -10.38351 -9.98602 -9.91912 -9.46368 -9.35189 -9.03973 -8.93429 -8.49338 -7.69751 -7.13215 -4.85241 0.88175 2.25508 2.57034 2.65863 2.82865 2.85910 3.11638 3.38959 3.42343 3.68363 3.89163 4.18498 4.51884 4.72304 4.87583 4.95860 5.03730 5.21518 5.40085 5.47768 5.53805 5.58679 5.75102 5.81915 5.87189 5.92323 6.13158 6.23727 6.45148 6.65632 6.85350 7.04140 7.18217 7.40478 7.68250 7.83389 8.01096 8.13556 8.25393 8.81964 9.18758 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.004975 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.300055 B = 5626.478735 C = 6815.986511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.062 3.938 3 Si 0.921 3.079 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.300 4.300 8 H 0.134 0.866 9 C 0.045 3.955 10 C -0.158 4.158 11 C -0.108 4.108 12 C 0.105 3.895 13 N -0.749 5.749 14 C 0.136 3.864 15 C -0.167 4.167 16 C 0.040 3.960 17 O -0.385 6.385 18 C 0.044 3.956 19 C -0.106 4.106 20 C -0.061 4.061 21 N 0.035 4.965 22 O -0.362 6.362 23 O -0.276 6.276 24 H 0.307 0.693 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.393 0.607 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 8.191 -7.415 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.171 4.171 3 Si 0.744 3.256 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.157 1.157 7 C -0.328 4.328 8 H 0.151 0.849 9 C 0.039 3.961 10 C -0.177 4.177 11 C -0.129 4.129 12 C 0.004 3.996 13 N -0.385 5.385 14 C 0.011 3.989 15 C -0.186 4.186 16 C -0.036 4.036 17 O -0.304 6.304 18 C -0.033 4.033 19 C -0.131 4.131 20 C -0.165 4.165 21 N 0.450 4.550 22 O -0.503 6.503 23 O -0.435 6.435 24 H 0.120 0.880 25 H 0.138 0.862 26 H 0.130 0.870 27 H 0.227 0.773 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.442 8.508 -7.613 16.886 hybrid contribution -0.028 0.032 0.386 0.388 sum 12.414 8.539 -7.227 16.711 Atomic orbital electron populations 1.68925 1.09391 1.33005 1.21883 1.28182 0.95070 1.02854 0.91004 0.86152 0.81576 0.77436 0.80476 1.18026 1.20078 1.15722 1.21987 0.90696 0.95896 1.24190 0.84862 1.17146 0.93119 0.92566 0.93284 1.20885 0.94396 1.01690 1.00770 1.20365 0.93637 0.98434 1.00430 1.16962 0.83587 0.98493 1.00602 1.43519 1.03816 1.40140 1.51015 1.21211 0.90468 0.93175 0.94094 1.24587 0.95587 1.01965 0.96424 1.24103 0.89010 0.98255 0.92256 1.89725 1.30382 1.92814 1.17508 1.23905 0.88773 0.98147 0.92471 1.19444 0.92877 1.00173 1.00642 1.19212 0.91532 1.01863 1.03851 1.49629 1.01950 1.01601 1.01793 1.96057 1.61421 1.30567 1.62207 1.96086 0.93636 1.81214 1.72589 0.87977 0.86156 0.86980 0.77300 0.92398 0.92586 0.87424 0.89724 0.89038 0.88974 0.89818 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -15.69 13.89 55.99 0.78 -14.91 16 2 C 0.06 1.36 5.65 -15.17 -0.09 1.28 16 3 Si 0.92 16.69 24.62 -169.99 -4.19 12.50 16 4 H -0.26 -4.17 6.64 56.52 0.38 -3.80 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.23 -4.49 6.90 56.52 0.39 -4.10 16 7 C -0.30 -7.43 8.37 -35.74 -0.30 -7.73 16 8 H 0.13 3.70 6.04 -52.49 -0.32 3.38 16 9 C 0.04 1.05 5.11 -106.75 -0.55 0.50 16 10 C -0.16 -3.12 7.12 -39.11 -0.28 -3.39 16 11 C -0.11 -1.87 9.21 -39.73 -0.37 -2.23 16 12 C 0.10 1.86 6.67 -83.80 -0.56 1.30 16 13 N -0.75 -10.07 5.65 -58.48 -0.33 -10.40 16 14 C 0.14 1.40 4.72 -4.04 -0.02 1.38 16 15 C -0.17 -1.42 3.99 -89.54 -0.36 -1.77 16 16 C 0.04 0.36 8.79 37.64 0.33 0.69 16 17 O -0.39 -4.18 12.46 -35.23 -0.44 -4.62 16 18 C 0.04 0.35 8.79 37.64 0.33 0.68 16 19 C -0.11 -2.27 9.35 -39.73 -0.37 -2.64 16 20 C -0.06 -1.53 6.89 -79.49 -0.55 -2.08 16 21 N 0.03 0.98 4.98 34.19 0.17 1.15 16 22 O -0.36 -10.47 19.14 -31.57 -0.60 -11.08 16 23 O -0.28 -8.20 16.28 -31.57 -0.51 -8.71 16 24 H 0.31 5.79 8.27 -40.82 -0.34 5.45 16 25 H 0.12 2.18 4.84 -52.49 -0.25 1.92 16 26 H 0.11 1.57 6.66 -52.48 -0.35 1.22 16 27 H 0.39 4.82 8.46 -40.82 -0.35 4.47 16 28 H 0.06 0.59 7.92 -51.93 -0.41 0.17 16 29 H 0.06 0.57 7.63 -51.93 -0.40 0.18 16 30 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.73 7.92 -51.93 -0.41 0.31 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.12 2.51 7.55 -52.48 -0.40 2.12 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -30.32 300.13 -7.11 -37.43 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -3.74 Total: 8.12 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.77 Total: -14.01 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.62 Total: -24.16 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.56 Total: -24.41 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -4.19 Total: 12.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.32 -7.11 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161949162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.268 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds