Wall clock time and date at job start Mon Mar 30 2020 23:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29491 * 1 3 3 Si 1.86797 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47154 * 268.56502 * 3 2 1 5 5 H 1.48499 * 109.46942 * 28.56513 * 3 2 1 6 6 H 1.48502 * 109.47156 * 148.56380 * 3 2 1 7 7 C 1.46591 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00434 * 350.71064 * 7 2 1 9 9 C 1.39524 * 119.99802 * 170.71357 * 7 2 1 10 10 C 1.41753 * 120.18066 * 324.15842 * 9 7 2 11 11 C 1.35800 * 119.79859 * 179.69896 * 10 9 7 12 12 C 1.40179 * 120.19366 * 0.55746 * 11 10 9 13 13 N 1.37655 * 119.81791 * 179.71791 * 12 11 10 14 14 C 1.46501 * 119.99526 * 359.72309 * 13 12 11 15 15 C 1.53004 * 109.47045 * 180.02562 * 14 13 12 16 16 C 1.54037 * 113.81571 * 273.50722 * 15 14 13 17 17 O 1.44448 * 85.42388 * 223.23639 * 16 15 14 18 18 C 1.44177 * 93.37924 * 24.09265 * 17 16 15 19 19 C 1.40149 * 120.37400 * 359.44050 * 12 11 10 20 20 C 1.35830 * 120.19346 * 0.27633 * 19 12 11 21 21 N 1.48012 * 120.10017 * 179.97438 * 20 19 12 22 22 O 1.31706 * 119.99952 * 353.82053 * 21 20 19 23 23 O 1.31700 * 120.00169 * 173.82025 * 21 20 19 24 24 H 0.96997 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.10148 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.90612 * 180.27340 * 11 10 9 27 27 H 0.96999 * 120.00796 * 179.44991 * 13 12 11 28 28 H 1.09000 * 109.47595 * 300.00110 * 14 13 12 29 29 H 1.08998 * 109.47127 * 60.00622 * 14 13 12 30 30 H 1.09000 * 112.99729 * 45.33746 * 15 14 13 31 31 H 1.08998 * 113.86537 * 337.34466 * 16 15 14 32 32 H 1.08997 * 113.86421 * 109.04714 * 16 15 14 33 33 H 1.09000 * 113.85946 * 221.77005 * 18 17 16 34 34 H 1.08993 * 113.98869 * 90.07641 * 18 17 16 35 35 H 1.08004 * 119.90428 * 180.29918 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 2.5067 2.0289 -1.3996 5 1 1.4114 2.6612 0.6695 6 1 3.5109 1.4492 0.7302 7 6 2.0279 -1.2695 -0.0006 8 1 1.4986 -2.1988 0.1500 9 6 3.4094 -1.2773 -0.1956 10 6 4.0091 -0.3487 -1.0830 11 6 5.3551 -0.3591 -1.2623 12 6 6.1498 -1.2921 -0.5818 13 7 7.5129 -1.2996 -0.7738 14 6 8.1285 -0.3381 -1.6919 15 6 9.6421 -0.5593 -1.7224 16 6 10.4039 0.1988 -0.6189 17 8 11.3534 0.5232 -1.6580 18 6 10.3848 0.3572 -2.7130 19 6 5.5650 -2.2137 0.2974 20 6 4.2209 -2.2133 0.4927 21 7 3.6054 -3.1878 1.4213 22 8 4.3419 -4.1342 1.9658 23 8 2.3213 -3.1086 1.7030 24 1 -0.4850 0.8400 0.0004 25 1 3.3979 0.3683 -1.6109 26 1 5.8143 0.3505 -1.9347 27 1 8.0663 -1.9387 -0.2982 28 1 7.7208 -0.4792 -2.6929 29 1 7.9159 0.6757 -1.3525 30 1 9.9173 -1.6108 -1.8045 31 1 9.8674 1.0626 -0.2263 32 1 10.8062 -0.4464 0.1622 33 1 10.7720 -0.1627 -3.5892 34 1 9.8415 1.2684 -2.9631 35 1 6.1851 -2.9260 0.8214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161949162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:52 Heat of formation + Delta-G solvation = 7.416196 kcal Electronic energy + Delta-G solvation = -21023.516583 eV Core-core repulsion = 17604.960826 eV Total energy + Delta-G solvation = -3418.555757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34183 -40.53236 -38.32772 -37.03322 -35.71773 -34.20652 -32.77883 -32.17175 -30.67431 -27.78081 -27.40260 -25.87379 -25.20745 -23.68443 -21.74112 -21.10253 -20.16988 -18.81461 -18.15559 -17.52145 -17.33070 -17.12138 -16.82313 -16.29223 -15.99306 -15.76141 -15.64447 -15.14572 -15.05245 -14.64730 -14.35569 -13.99206 -13.56246 -13.26290 -13.04489 -12.88400 -12.68161 -12.30414 -11.94963 -11.87911 -11.60887 -11.34348 -11.19860 -11.01657 -10.91835 -10.69201 -10.60184 -10.14713 -9.50182 -8.65100 -6.74007 -1.05791 0.64136 0.91316 1.17410 1.37807 1.49745 1.55391 1.94130 2.22231 2.55431 2.82805 2.98151 3.39736 3.79107 3.89347 4.10211 4.16861 4.26190 4.31820 4.45195 4.48992 4.60620 4.66271 4.69728 4.81530 4.92594 5.04554 5.11833 5.22022 5.24004 5.26196 5.35759 5.39153 5.63969 5.88327 5.99267 6.30075 6.57649 6.86682 7.08447 7.42710 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.004975 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.300055 B = 5626.478735 C = 6815.986511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.016 3.984 3 Si 0.975 3.025 4 H -0.194 1.194 5 H -0.255 1.255 6 H -0.246 1.246 7 C -0.244 4.244 8 H 0.087 0.913 9 C 0.000 4.000 10 C -0.126 4.126 11 C -0.104 4.104 12 C 0.188 3.812 13 N -0.730 5.730 14 C 0.125 3.875 15 C -0.159 4.159 16 C 0.034 3.966 17 O -0.415 6.415 18 C 0.047 3.953 19 C -0.196 4.196 20 C -0.027 4.027 21 N 0.017 4.983 22 O -0.489 6.489 23 O -0.423 6.423 24 H 0.334 0.666 25 H 0.158 0.842 26 H 0.177 0.823 27 H 0.402 0.598 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.216 15.173 -12.484 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.216 4.216 3 Si 0.789 3.211 4 H -0.117 1.117 5 H -0.180 1.180 6 H -0.169 1.169 7 C -0.275 4.275 8 H 0.105 0.895 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.124 4.124 12 C 0.080 3.920 13 N -0.362 5.362 14 C 0.001 3.999 15 C -0.177 4.177 16 C -0.042 4.042 17 O -0.335 6.335 18 C -0.030 4.030 19 C -0.223 4.223 20 C -0.142 4.142 21 N 0.380 4.620 22 O -0.596 6.596 23 O -0.543 6.543 24 H 0.148 0.852 25 H 0.175 0.825 26 H 0.194 0.806 27 H 0.236 0.764 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.298 15.200 -12.466 24.308 hybrid contribution -0.639 -1.341 1.278 1.960 sum 13.659 13.859 -11.188 22.445 Atomic orbital electron populations 1.68860 1.10818 1.36133 1.17652 1.29323 0.96101 1.05264 0.90923 0.85450 0.79707 0.72061 0.83886 1.11666 1.17961 1.16901 1.22503 0.92215 0.96299 1.16457 0.89543 1.17563 0.92462 0.94977 0.95597 1.21279 0.95914 0.99190 0.98153 1.20986 0.92531 0.98511 1.00382 1.17287 0.85417 0.94394 0.94944 1.43997 1.02347 1.39977 1.49926 1.21636 0.91295 0.92873 0.94068 1.24499 0.94308 1.02254 0.96672 1.24242 0.88947 0.98707 0.92311 1.89719 1.31901 1.93003 1.18850 1.24117 0.87954 0.98776 0.92121 1.19325 0.91733 1.04772 1.06466 1.19900 0.93203 0.99272 1.01823 1.49478 1.01212 1.04463 1.06857 1.95899 1.61823 1.34367 1.67548 1.95928 0.95825 1.84104 1.78398 0.85150 0.82498 0.80600 0.76375 0.90121 0.90421 0.87386 0.88929 0.89033 0.87772 0.87907 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -29.62 13.89 23.22 0.32 -29.29 16 2 C 0.02 0.64 5.65 87.22 0.49 1.13 16 3 Si 0.97 27.95 24.62 68.60 1.69 29.64 16 4 H -0.19 -3.98 6.64 99.48 0.66 -3.32 16 5 H -0.25 -6.74 7.11 99.48 0.71 -6.03 16 6 H -0.25 -7.70 6.90 99.48 0.69 -7.02 16 7 C -0.24 -12.32 8.37 24.76 0.21 -12.11 16 8 H 0.09 5.26 6.04 -2.91 -0.02 5.24 16 9 C 0.00 -0.02 5.11 -21.24 -0.11 -0.13 16 10 C -0.13 -4.18 7.12 22.57 0.16 -4.02 16 11 C -0.10 -2.79 9.21 22.18 0.20 -2.58 16 12 C 0.19 5.86 6.67 39.16 0.26 6.13 16 13 N -0.73 -15.77 5.65 -338.95 -1.92 -17.69 16 14 C 0.12 1.62 4.72 86.38 0.41 2.02 16 15 C -0.16 -1.83 3.99 -10.09 -0.04 -1.87 16 16 C 0.03 0.47 8.79 72.30 0.64 1.11 16 17 O -0.42 -7.42 12.46 -148.98 -1.86 -9.27 16 18 C 0.05 0.49 8.79 72.30 0.64 1.13 16 19 C -0.20 -8.65 9.35 22.18 0.21 -8.44 16 20 C -0.03 -1.47 6.89 36.68 0.25 -1.21 16 21 N 0.02 1.12 4.98 -45.75 -0.23 0.89 16 22 O -0.49 -33.91 19.14 3.50 0.07 -33.84 16 23 O -0.42 -29.70 16.28 3.51 0.06 -29.64 16 24 H 0.33 11.17 8.27 -92.71 -0.77 10.40 16 25 H 0.16 4.15 4.84 -2.91 -0.01 4.13 16 26 H 0.18 2.78 6.66 -2.91 -0.02 2.76 16 27 H 0.40 8.40 8.46 -92.71 -0.78 7.61 16 28 H 0.08 0.86 7.92 -2.39 -0.02 0.85 16 29 H 0.08 0.85 7.63 -2.39 -0.02 0.83 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.13 7.92 -2.39 -0.02 1.11 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 35 H 0.11 4.92 7.55 -2.91 -0.02 4.89 16 Total: -1.00 -84.37 300.13 1.75 -82.62 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.30 Total: 25.43 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 3.32 Total: -18.85 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -1.82 Total: -46.09 kcal Atomic # 8 Polarization: -71.03 SS G_CDS: -1.73 Total: -72.76 kcal Atomic # 14 Polarization: 27.95 SS G_CDS: 1.69 Total: 29.64 kcal Total: -84.37 1.75 -82.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161949162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.034 kcal (2) G-P(sol) polarization free energy of solvation -84.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds