Wall clock time and date at job start Mon Mar 30 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86795 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47566 * 240.00089 * 3 2 1 5 5 H 1.48510 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47249 * 120.00041 * 3 2 1 7 7 C 1.39938 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99897 * 197.88281 * 7 2 1 9 9 C 1.41443 * 119.99466 * 17.87985 * 7 2 1 10 10 C 1.40792 * 120.17087 * 204.44434 * 9 7 2 11 11 C 1.37707 * 120.03518 * 180.02562 * 10 9 7 12 12 C 1.38383 * 120.41432 * 359.67651 * 11 10 9 13 13 C 1.39874 * 120.35295 * 0.60141 * 12 11 10 14 14 C 1.47892 * 120.02200 * 179.69573 * 13 12 11 15 15 O 1.21545 * 119.99759 * 179.72606 * 14 13 12 16 16 N 1.34770 * 119.99956 * 359.72859 * 14 13 12 17 17 C 1.46496 * 120.00143 * 179.72382 * 16 14 13 18 18 H 1.09001 * 109.46907 * 35.27375 * 17 16 14 19 19 C 1.52998 * 109.47570 * 275.27747 * 17 16 14 20 20 O 1.42904 * 109.46666 * 295.00112 * 19 17 16 21 21 C 1.50702 * 109.47610 * 155.27296 * 17 16 14 22 22 N 1.34775 * 120.00408 * 180.02562 * 21 17 16 23 23 O 1.21281 * 119.99432 * 0.02562 * 21 17 16 24 24 C 1.39032 * 119.95062 * 359.42458 * 13 12 11 25 25 H 0.96994 * 120.00078 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.98090 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.79434 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.82011 * 180.30246 * 12 11 10 29 29 H 0.97005 * 120.00344 * 0.02562 * 16 14 13 30 30 H 1.09001 * 109.47135 * 54.99093 * 19 17 16 31 31 H 1.08993 * 109.47564 * 174.99794 * 19 17 16 32 32 H 0.96700 * 113.99761 * 179.97438 * 20 19 17 33 33 H 0.97003 * 119.99479 * 0.02562 * 22 21 17 34 34 H 0.96997 * 120.00269 * 180.02562 * 22 21 17 35 35 H 1.08005 * 120.20103 * 180.25346 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0489 -1.2345 0.2866 9 6 1.3520 -2.4070 -0.3772 10 6 1.8264 -3.6500 0.0835 11 6 1.1859 -4.8119 -0.2853 12 6 0.0707 -4.7677 -1.1035 13 6 -0.4115 -3.5425 -1.5756 14 6 -1.5999 -3.5043 -2.4550 15 8 -2.0215 -2.4390 -2.8609 16 7 -2.2154 -4.6506 -2.8062 17 6 -3.3962 -4.6124 -3.6724 18 1 -3.2877 -3.8073 -4.3992 19 6 -4.6446 -4.3673 -2.8225 20 8 -4.8521 -5.4793 -1.9493 21 6 -3.5314 -5.9274 -4.3960 22 7 -4.5524 -6.1229 -5.2538 23 8 -2.7213 -6.8099 -4.2063 24 6 0.2239 -2.3602 -1.2129 25 1 -0.4850 0.8400 0.0004 26 1 2.6930 -3.6922 0.7265 27 1 1.5533 -5.7633 0.0700 28 1 -0.4272 -5.6845 -1.3828 29 1 -1.8792 -5.5008 -2.4819 30 1 -4.5096 -3.4615 -2.2314 31 1 -5.5105 -4.2503 -3.4740 32 1 -5.6282 -5.3920 -1.3790 33 1 -5.2000 -5.4168 -5.4057 34 1 -4.6396 -6.9694 -5.7192 35 1 -0.1474 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:45 Heat of formation + Delta-G solvation = -107.711303 kcal Electronic energy + Delta-G solvation = -21203.798504 eV Core-core repulsion = 17780.250444 eV Total energy + Delta-G solvation = -3423.548060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.22560 -38.75909 -37.12955 -36.65475 -34.04416 -33.88015 -33.61613 -30.60587 -29.42423 -28.76242 -25.28190 -24.37019 -22.50270 -20.96281 -20.27234 -19.63788 -18.25116 -17.75722 -17.39380 -16.54630 -15.96833 -15.48929 -15.18705 -15.04739 -14.68320 -14.44851 -13.87869 -13.71913 -13.59853 -13.12315 -12.73081 -12.49712 -12.39979 -11.88472 -11.61587 -11.13135 -11.05875 -10.71323 -10.49315 -10.38847 -10.01791 -9.96530 -9.86226 -9.65559 -9.18541 -9.07439 -8.76575 -7.60455 -7.47994 -6.77738 -4.38361 2.20671 2.51188 2.85012 3.08506 3.10350 3.12409 3.19436 3.69434 3.83372 3.93611 4.11163 4.63485 4.65636 4.97985 5.07806 5.29641 5.57079 5.64207 5.82660 6.16096 6.36735 6.56890 6.71575 6.75336 7.01030 7.04890 7.11922 7.24275 7.41399 7.47360 7.74242 7.79651 7.96023 8.06641 8.12168 8.21599 8.53049 8.82325 8.85907 8.90296 10.17191 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004429 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.071400 B = 6321.137909 C = 6903.313072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.099 4.099 12 C -0.212 4.212 13 C -0.128 4.128 14 C 0.569 3.431 15 O -0.551 6.551 16 N -0.712 5.712 17 C 0.130 3.870 18 H 0.125 0.875 19 C 0.067 3.933 20 O -0.564 6.564 21 C 0.527 3.473 22 N -0.852 5.852 23 O -0.531 6.531 24 C -0.092 4.092 25 H 0.284 0.716 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.412 0.588 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.380 0.620 33 H 0.400 0.600 34 H 0.403 0.597 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -6.073 -6.821 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.229 4.229 11 C -0.117 4.117 12 C -0.232 4.232 13 C -0.131 4.131 14 C 0.361 3.639 15 O -0.430 6.430 16 N -0.368 5.368 17 C 0.020 3.980 18 H 0.142 0.858 19 C -0.012 4.012 20 O -0.369 6.369 21 C 0.311 3.689 22 N -0.417 5.417 23 O -0.406 6.406 24 C -0.112 4.112 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.229 0.771 34 H 0.234 0.766 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.409 -5.818 -7.143 13.901 hybrid contribution -0.543 0.531 0.176 0.780 sum -10.952 -5.287 -6.967 14.016 Atomic orbital electron populations 1.69787 1.07565 1.29745 1.33924 1.25947 0.94755 1.01473 0.92291 0.86334 0.80114 0.80130 0.79973 1.18738 1.20269 1.18992 1.19548 0.98219 0.91079 1.40225 0.90131 1.17582 0.91227 0.92435 0.89233 1.21122 1.03414 0.92753 1.05579 1.20455 0.95972 0.96805 0.98454 1.20438 1.00982 0.94865 1.06889 1.19387 0.96445 0.95395 1.01856 1.18892 0.83097 0.82456 0.79477 1.90676 1.66699 1.29796 1.55803 1.45657 1.28963 1.10981 1.51169 1.20769 0.87386 0.96328 0.93518 0.85750 1.22582 0.95291 0.90315 0.93042 1.86541 1.51902 1.42853 1.55649 1.20440 0.80621 0.89248 0.78629 1.43705 1.30085 1.20611 1.47265 1.90743 1.41810 1.44444 1.63568 1.21620 0.96519 0.96328 0.96745 0.90485 0.88578 0.88791 0.88903 0.74887 0.91285 0.92755 0.77278 0.77134 0.76621 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.79 10.96 55.55 0.61 -20.18 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.24 9.05 -37.73 -0.34 -12.58 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 10 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 11 C -0.10 -2.20 10.01 -39.72 -0.40 -2.60 16 12 C -0.21 -4.76 9.55 -38.92 -0.37 -5.13 16 13 C -0.13 -3.11 5.87 -105.04 -0.62 -3.73 16 14 C 0.57 12.65 7.74 -12.31 -0.10 12.55 16 15 O -0.55 -13.26 16.00 5.33 0.09 -13.18 16 16 N -0.71 -12.99 4.85 -55.87 -0.27 -13.26 16 17 C 0.13 1.84 2.78 -69.08 -0.19 1.65 16 18 H 0.13 1.67 7.58 -51.93 -0.39 1.28 16 19 C 0.07 0.78 6.71 37.16 0.25 1.03 16 20 O -0.56 -6.80 13.09 -35.23 -0.46 -7.26 16 21 C 0.53 7.04 7.01 -10.99 -0.08 6.96 16 22 N -0.85 -6.84 8.78 31.22 0.27 -6.56 16 23 O -0.53 -9.31 16.67 5.56 0.09 -9.22 16 24 C -0.09 -2.48 8.24 -38.45 -0.32 -2.80 16 25 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 26 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 27 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.09 1.86 6.38 -52.49 -0.33 1.52 16 29 H 0.41 7.66 5.81 -40.82 -0.24 7.42 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.41 7.71 -51.93 -0.40 0.01 16 32 H 0.38 2.79 9.12 45.56 0.42 3.21 16 33 H 0.40 1.93 8.35 -40.82 -0.34 1.59 16 34 H 0.40 2.73 8.93 -40.82 -0.36 2.37 16 35 H 0.13 3.86 5.74 -52.48 -0.30 3.56 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -33.85 308.77 -6.05 -39.89 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -2.77 Total: 17.60 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.22 Total: -6.28 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.61 Total: -40.00 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.28 Total: -29.65 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.85 -6.05 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.820 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds