Wall clock time and date at job start Mon Mar 30 2020 23:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86795 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47566 * 240.00089 * 3 2 1 5 5 H 1.48510 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47249 * 120.00041 * 3 2 1 7 7 C 1.39938 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99897 * 197.88281 * 7 2 1 9 9 C 1.41443 * 119.99466 * 17.87985 * 7 2 1 10 10 C 1.40792 * 120.17087 * 204.44434 * 9 7 2 11 11 C 1.37707 * 120.03518 * 180.02562 * 10 9 7 12 12 C 1.38383 * 120.41432 * 359.67651 * 11 10 9 13 13 C 1.39874 * 120.35295 * 0.60141 * 12 11 10 14 14 C 1.47892 * 120.02200 * 179.69573 * 13 12 11 15 15 O 1.21545 * 119.99759 * 179.72606 * 14 13 12 16 16 N 1.34770 * 119.99956 * 359.72859 * 14 13 12 17 17 C 1.46496 * 120.00143 * 179.72382 * 16 14 13 18 18 H 1.09001 * 109.46907 * 35.27375 * 17 16 14 19 19 C 1.52998 * 109.47570 * 275.27747 * 17 16 14 20 20 O 1.42904 * 109.46666 * 295.00112 * 19 17 16 21 21 C 1.50702 * 109.47610 * 155.27296 * 17 16 14 22 22 N 1.34775 * 120.00408 * 180.02562 * 21 17 16 23 23 O 1.21281 * 119.99432 * 0.02562 * 21 17 16 24 24 C 1.39032 * 119.95062 * 359.42458 * 13 12 11 25 25 H 0.96994 * 120.00078 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.98090 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.79434 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.82011 * 180.30246 * 12 11 10 29 29 H 0.97005 * 120.00344 * 0.02562 * 16 14 13 30 30 H 1.09001 * 109.47135 * 54.99093 * 19 17 16 31 31 H 1.08993 * 109.47564 * 174.99794 * 19 17 16 32 32 H 0.96700 * 113.99761 * 179.97438 * 20 19 17 33 33 H 0.97003 * 119.99479 * 0.02562 * 22 21 17 34 34 H 0.96997 * 120.00269 * 180.02562 * 22 21 17 35 35 H 1.08005 * 120.20103 * 180.25346 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0489 -1.2345 0.2866 9 6 1.3520 -2.4070 -0.3772 10 6 1.8264 -3.6500 0.0835 11 6 1.1859 -4.8119 -0.2853 12 6 0.0707 -4.7677 -1.1035 13 6 -0.4115 -3.5425 -1.5756 14 6 -1.5999 -3.5043 -2.4550 15 8 -2.0215 -2.4390 -2.8609 16 7 -2.2154 -4.6506 -2.8062 17 6 -3.3962 -4.6124 -3.6724 18 1 -3.2877 -3.8073 -4.3992 19 6 -4.6446 -4.3673 -2.8225 20 8 -4.8521 -5.4793 -1.9493 21 6 -3.5314 -5.9274 -4.3960 22 7 -4.5524 -6.1229 -5.2538 23 8 -2.7213 -6.8099 -4.2063 24 6 0.2239 -2.3602 -1.2129 25 1 -0.4850 0.8400 0.0004 26 1 2.6930 -3.6922 0.7265 27 1 1.5533 -5.7633 0.0700 28 1 -0.4272 -5.6845 -1.3828 29 1 -1.8792 -5.5008 -2.4819 30 1 -4.5096 -3.4615 -2.2314 31 1 -5.5105 -4.2503 -3.4740 32 1 -5.6282 -5.3920 -1.3790 33 1 -5.2000 -5.4168 -5.4057 34 1 -4.6396 -6.9694 -5.7192 35 1 -0.1474 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:44 Heat of formation + Delta-G solvation = -137.306043 kcal Electronic energy + Delta-G solvation = -21205.081828 eV Core-core repulsion = 17780.250444 eV Total energy + Delta-G solvation = -3424.831384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52514 -40.26486 -38.82560 -37.77411 -35.70273 -35.30316 -34.79738 -32.31877 -31.30829 -30.14530 -27.19183 -25.51378 -24.10854 -22.83245 -21.47914 -21.21335 -19.75836 -18.93344 -18.57752 -17.86147 -17.40109 -16.95059 -16.67932 -16.43458 -16.26574 -15.83879 -15.43332 -15.10414 -14.98310 -14.68357 -14.40441 -14.28472 -13.71420 -13.41804 -13.01738 -12.86519 -12.79417 -12.53314 -12.19901 -11.92196 -11.52822 -11.38432 -11.06548 -11.04465 -10.80127 -10.72303 -10.24783 -9.49887 -9.40342 -8.66137 -6.37832 0.34396 1.00402 1.38085 1.47513 1.49182 1.52310 1.91777 2.05213 2.20658 2.53646 2.78054 3.20381 3.68635 3.75661 3.95732 3.97606 4.24669 4.38108 4.43518 4.57474 4.61560 4.88718 5.08427 5.16735 5.27079 5.32896 5.50928 5.81920 5.85337 5.92010 6.03982 6.26484 6.31925 6.44559 6.61925 6.80912 6.87702 6.93278 7.19250 7.22918 8.30975 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004429 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.071400 B = 6321.137909 C = 6903.313072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.498 4.498 8 H 0.085 0.915 9 C 0.069 3.931 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.203 4.203 13 C -0.139 4.139 14 C 0.568 3.432 15 O -0.578 6.578 16 N -0.699 5.699 17 C 0.117 3.883 18 H 0.131 0.869 19 C 0.073 3.927 20 O -0.583 6.583 21 C 0.530 3.470 22 N -0.821 5.821 23 O -0.578 6.578 24 C -0.127 4.127 25 H 0.288 0.712 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.412 0.588 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.400 0.600 33 H 0.419 0.581 34 H 0.414 0.586 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 -7.147 -7.390 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.527 4.527 8 H 0.103 0.897 9 C 0.066 3.934 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.223 4.223 13 C -0.142 4.142 14 C 0.359 3.641 15 O -0.459 6.459 16 N -0.353 5.353 17 C 0.008 3.992 18 H 0.149 0.851 19 C -0.006 4.006 20 O -0.392 6.392 21 C 0.314 3.686 22 N -0.387 5.387 23 O -0.457 6.457 24 C -0.147 4.147 25 H 0.099 0.901 26 H 0.129 0.871 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.250 0.750 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.251 0.749 33 H 0.251 0.749 34 H 0.247 0.753 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.461 -6.927 -7.739 15.467 hybrid contribution -0.360 0.685 0.305 0.832 sum -11.822 -6.243 -7.433 15.297 Atomic orbital electron populations 1.69877 1.09229 1.30795 1.34953 1.26852 0.95427 1.04895 0.91193 0.85224 0.78720 0.75384 0.80238 1.18526 1.19433 1.17742 1.19853 0.98663 0.92187 1.41969 0.89720 1.17944 0.91765 0.93842 0.89818 1.21406 1.03931 0.92672 1.05583 1.20888 0.95244 0.97846 0.97395 1.20804 1.00721 0.95102 1.05650 1.19721 0.97094 0.95414 1.01948 1.18618 0.82910 0.83161 0.79456 1.90650 1.67385 1.30944 1.56933 1.45499 1.29661 1.09408 1.50722 1.21169 0.86810 0.97408 0.93792 0.85147 1.22520 0.95742 0.89082 0.93255 1.86487 1.53530 1.42802 1.56350 1.20247 0.81177 0.88146 0.79067 1.43418 1.28531 1.21657 1.45061 1.90728 1.43881 1.45616 1.65501 1.21445 0.98191 0.96239 0.98874 0.90130 0.87141 0.84736 0.86049 0.74975 0.93723 0.87617 0.74925 0.74867 0.75289 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.48 10.96 21.83 0.24 -45.25 16 2 C 0.03 1.65 5.14 85.25 0.44 2.09 16 3 Si 0.98 39.31 29.59 68.60 2.03 41.34 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.50 -27.29 9.05 23.47 0.21 -27.08 16 8 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 10 C -0.22 -10.51 9.78 22.77 0.22 -10.29 16 11 C -0.10 -4.12 10.01 22.18 0.22 -3.90 16 12 C -0.20 -8.91 9.55 22.70 0.22 -8.70 16 13 C -0.14 -6.90 5.87 -20.13 -0.12 -7.01 16 14 C 0.57 25.69 7.74 86.80 0.67 26.37 16 15 O -0.58 -28.72 16.00 -3.86 -0.06 -28.78 16 16 N -0.70 -25.16 4.85 -448.95 -2.18 -27.34 16 17 C 0.12 3.13 2.78 44.25 0.12 3.26 16 18 H 0.13 3.34 7.58 -2.39 -0.02 3.32 16 19 C 0.07 1.55 6.71 71.98 0.48 2.03 16 20 O -0.58 -12.72 13.09 -148.98 -1.95 -14.67 16 21 C 0.53 13.04 7.01 87.66 0.61 13.66 16 22 N -0.82 -10.49 8.78 -173.53 -1.52 -12.02 16 23 O -0.58 -19.50 16.67 -3.03 -0.05 -19.55 16 24 C -0.13 -7.17 8.24 23.01 0.19 -6.98 16 25 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 26 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 27 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.12 4.59 6.38 -2.91 -0.02 4.57 16 29 H 0.41 14.90 5.81 -92.70 -0.54 14.36 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.15 7.71 -2.39 -0.02 1.13 16 32 H 0.40 4.90 9.12 -74.06 -0.68 4.22 16 33 H 0.42 2.33 8.35 -92.71 -0.77 1.56 16 34 H 0.41 4.25 8.93 -92.71 -0.83 3.42 16 35 H 0.11 6.48 5.74 -2.91 -0.02 6.47 16 Total: -1.00 -77.24 308.77 -1.96 -79.20 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -1.62 Total: 39.96 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.16 Total: -12.88 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.46 Total: -84.60 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -2.06 Total: -63.01 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -77.24 -1.96 -79.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.110 kcal (2) G-P(sol) polarization free energy of solvation -77.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds