Wall clock time and date at job start Tue Mar 31 2020 00:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47079 * 120.88229 * 269.71668 * 12 9 7 14 14 C 1.53700 * 108.27638 * 128.75778 * 13 12 9 15 15 N 1.46895 * 109.25815 * 54.08133 * 14 13 12 16 16 C 1.46897 * 110.99997 * 172.60486 * 15 14 13 17 17 C 1.52998 * 109.47325 * 294.30687 * 16 15 14 18 18 C 1.53005 * 109.46807 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.46607 * 179.97438 * 18 17 16 20 20 C 1.46898 * 111.27175 * 296.76166 * 15 14 13 21 21 C 1.47080 * 120.88374 * 89.99886 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.63392 * 248.52679 * 13 12 9 24 24 H 1.09007 * 109.62749 * 9.10794 * 13 12 9 25 25 H 1.09006 * 109.64136 * 294.07898 * 14 13 12 26 26 H 1.08997 * 109.42094 * 173.95240 * 14 13 12 27 27 H 1.09000 * 109.46844 * 54.31000 * 16 15 14 28 28 H 1.08997 * 109.46864 * 174.30571 * 16 15 14 29 29 H 1.09002 * 109.46976 * 299.99666 * 17 16 15 30 30 H 1.08997 * 109.47244 * 60.00117 * 17 16 15 31 31 H 1.09002 * 109.47107 * 299.99620 * 18 17 16 32 32 H 1.08997 * 109.47095 * 60.00059 * 18 17 16 33 33 H 0.96705 * 113.99406 * 179.97438 * 19 18 17 34 34 H 1.09005 * 109.48780 * 303.14431 * 20 15 14 35 35 H 1.09002 * 109.49387 * 183.06567 * 20 15 14 36 36 H 1.09004 * 109.62610 * 350.89417 * 21 12 9 37 37 H 1.09000 * 109.63031 * 111.46887 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.7564 -4.4881 -1.2764 14 6 4.2925 -4.4722 -1.2265 15 7 4.7452 -5.1722 -0.0170 16 6 6.2053 -5.3338 -0.0177 17 6 6.6149 -6.2645 -1.1609 18 6 8.1358 -6.4322 -1.1619 19 8 8.5183 -7.3020 -2.2293 20 6 4.2923 -4.4830 1.1986 21 6 2.7608 -4.4952 1.2481 22 1 -0.4850 0.8401 -0.0004 23 1 2.4016 -5.5115 -1.3977 24 1 2.4095 -3.8761 -2.1091 25 1 4.6478 -3.4419 -1.2051 26 1 4.6890 -4.9758 -2.1082 27 1 6.6784 -4.3613 -0.1536 28 1 6.5237 -5.7631 0.9322 29 1 6.1419 -7.2370 -1.0249 30 1 6.2965 -5.8352 -2.1108 31 1 8.6085 -5.4595 -1.2981 32 1 8.4546 -6.8613 -0.2120 33 1 9.4714 -7.4537 -2.2906 34 1 4.6477 -3.4526 1.1863 35 1 4.6887 -4.9945 2.0758 36 1 2.4167 -3.8879 2.0854 37 1 2.4063 -5.5192 1.3649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:34 Heat of formation + Delta-G solvation = -135.633081 kcal Electronic energy + Delta-G solvation = -20610.455063 eV Core-core repulsion = 17321.140176 eV Total energy + Delta-G solvation = -3289.314888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.82301 -37.19884 -35.28503 -34.70762 -33.94598 -33.07924 -31.51479 -30.66321 -26.64801 -26.13055 -23.81668 -23.42008 -21.16316 -20.21696 -18.50977 -17.68164 -17.38660 -16.33541 -15.95946 -15.32927 -14.98965 -14.89079 -14.74586 -14.25541 -14.21161 -13.64969 -13.48283 -13.28818 -12.79833 -12.15155 -12.00742 -11.73563 -11.53401 -11.29977 -11.27736 -11.25069 -10.98202 -10.94177 -10.70180 -10.61071 -10.28544 -10.20054 -10.08883 -9.95707 -9.26889 -8.93668 -8.41145 -8.00589 -6.70405 -5.32505 2.26955 3.03404 3.11778 3.18365 3.69180 4.04144 4.27025 4.55040 4.63007 4.75941 5.00009 5.06944 5.17963 5.30273 5.33704 5.35079 5.54265 5.63330 5.67211 5.69629 5.80042 5.92685 5.94473 6.07184 6.08910 6.15919 6.26398 6.44229 6.46115 6.76187 7.18591 7.20392 7.32035 7.36031 7.58996 7.96731 8.88282 10.23069 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.004868 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.125887 B = 5750.379821 C = 6286.662274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.100 0.900 9 S 2.715 3.285 10 O -1.004 7.004 11 O -1.004 7.004 12 N -1.015 6.015 13 C 0.133 3.867 14 C 0.037 3.963 15 N -0.535 5.535 16 C 0.059 3.941 17 C -0.119 4.119 18 C 0.077 3.923 19 O -0.575 6.575 20 C 0.042 3.958 21 C 0.133 3.867 22 H 0.290 0.710 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.378 0.622 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.243 -9.177 -0.117 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.118 0.882 9 S 2.816 3.184 10 O -0.994 6.994 11 O -0.994 6.994 12 N -0.850 5.850 13 C 0.006 3.994 14 C -0.092 4.092 15 N -0.260 5.260 16 C -0.070 4.070 17 C -0.156 4.156 18 C -0.001 4.001 19 O -0.380 6.380 20 C -0.087 4.087 21 C 0.006 3.994 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.224 0.776 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.233 -9.713 -0.210 16.416 hybrid contribution 2.082 2.101 0.150 2.962 sum 15.316 -7.612 -0.060 17.103 Atomic orbital electron populations 1.69907 1.06758 1.30603 1.40228 1.24748 0.94441 1.00754 0.88533 0.86156 0.80361 0.80555 0.78604 1.18785 1.19573 1.19580 1.30659 1.05985 1.11968 1.66663 0.88210 1.00509 0.72149 0.72922 0.72786 1.93351 1.72753 1.87581 1.45751 1.93351 1.72756 1.87600 1.45704 1.58279 1.62367 1.54399 1.09958 1.21361 0.91815 0.99598 0.86598 1.22674 0.96833 0.96991 0.92695 1.61846 1.10319 1.51080 1.02754 1.21951 0.88398 0.97906 0.98720 1.21521 0.93388 1.01328 0.99402 1.22142 0.96150 0.92617 0.89213 1.86493 1.28624 1.69392 1.53495 1.22508 0.96922 0.97175 0.92103 1.21263 0.91797 0.99538 0.86774 0.89938 0.91675 0.88915 0.93947 0.90032 0.94842 0.90770 0.90310 0.90978 0.93818 0.93688 0.77559 0.93963 0.90287 0.88894 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.91 13.19 55.43 0.73 -24.18 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -1.02 -28.04 9.75 30.60 0.30 -27.74 16 8 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 9 S 2.72 72.54 4.98 -107.50 -0.54 72.01 16 10 O -1.00 -29.32 16.80 -57.17 -0.96 -30.28 16 11 O -1.00 -29.39 16.79 -57.17 -0.96 -30.35 16 12 N -1.01 -20.89 3.32 -112.97 -0.38 -21.27 16 13 C 0.13 2.34 6.56 -3.36 -0.02 2.32 16 14 C 0.04 0.55 5.48 -3.46 -0.02 0.53 16 15 N -0.54 -7.36 4.63 -234.03 -1.08 -8.44 16 16 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 17 C -0.12 -1.23 5.51 -26.73 -0.15 -1.38 16 18 C 0.08 0.66 7.05 37.16 0.26 0.92 16 19 O -0.57 -5.37 13.66 -35.23 -0.48 -5.85 16 20 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 21 C 0.13 2.31 6.53 -3.60 -0.02 2.29 16 22 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.09 1.71 7.21 -51.92 -0.37 1.34 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 27 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.38 1.69 9.12 45.56 0.42 2.11 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.93 7.99 -51.93 -0.41 0.51 16 36 H 0.09 1.69 7.22 -51.93 -0.37 1.31 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -35.84 314.45 -8.48 -44.32 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.74 Total: 1.98 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 0.21 Total: -18.23 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.73 Total: -53.88 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -2.40 Total: -66.47 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 72.54 SS G_CDS: -0.54 Total: 72.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.84 -8.48 -44.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.313 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds