Wall clock time and date at job start Tue Mar 31 2020 00:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47079 * 120.88229 * 269.71668 * 12 9 7 14 14 C 1.53700 * 108.27638 * 128.75778 * 13 12 9 15 15 N 1.46895 * 109.25815 * 54.08133 * 14 13 12 16 16 C 1.46897 * 110.99997 * 172.60486 * 15 14 13 17 17 C 1.52998 * 109.47325 * 294.30687 * 16 15 14 18 18 C 1.53005 * 109.46807 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.46607 * 179.97438 * 18 17 16 20 20 C 1.46898 * 111.27175 * 296.76166 * 15 14 13 21 21 C 1.47080 * 120.88374 * 89.99886 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.63392 * 248.52679 * 13 12 9 24 24 H 1.09007 * 109.62749 * 9.10794 * 13 12 9 25 25 H 1.09006 * 109.64136 * 294.07898 * 14 13 12 26 26 H 1.08997 * 109.42094 * 173.95240 * 14 13 12 27 27 H 1.09000 * 109.46844 * 54.31000 * 16 15 14 28 28 H 1.08997 * 109.46864 * 174.30571 * 16 15 14 29 29 H 1.09002 * 109.46976 * 299.99666 * 17 16 15 30 30 H 1.08997 * 109.47244 * 60.00117 * 17 16 15 31 31 H 1.09002 * 109.47107 * 299.99620 * 18 17 16 32 32 H 1.08997 * 109.47095 * 60.00059 * 18 17 16 33 33 H 0.96705 * 113.99406 * 179.97438 * 19 18 17 34 34 H 1.09005 * 109.48780 * 303.14431 * 20 15 14 35 35 H 1.09002 * 109.49387 * 183.06567 * 20 15 14 36 36 H 1.09004 * 109.62610 * 350.89417 * 21 12 9 37 37 H 1.09000 * 109.63031 * 111.46887 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.7564 -4.4881 -1.2764 14 6 4.2925 -4.4722 -1.2265 15 7 4.7452 -5.1722 -0.0170 16 6 6.2053 -5.3338 -0.0177 17 6 6.6149 -6.2645 -1.1609 18 6 8.1358 -6.4322 -1.1619 19 8 8.5183 -7.3020 -2.2293 20 6 4.2923 -4.4830 1.1986 21 6 2.7608 -4.4952 1.2481 22 1 -0.4850 0.8401 -0.0004 23 1 2.4016 -5.5115 -1.3977 24 1 2.4095 -3.8761 -2.1091 25 1 4.6478 -3.4419 -1.2051 26 1 4.6890 -4.9758 -2.1082 27 1 6.6784 -4.3613 -0.1536 28 1 6.5237 -5.7631 0.9322 29 1 6.1419 -7.2370 -1.0249 30 1 6.2965 -5.8352 -2.1108 31 1 8.6085 -5.4595 -1.2981 32 1 8.4546 -6.8613 -0.2120 33 1 9.4714 -7.4537 -2.2906 34 1 4.6477 -3.4526 1.1863 35 1 4.6887 -4.9945 2.0758 36 1 2.4167 -3.8879 2.0854 37 1 2.4063 -5.5192 1.3649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:34 Heat of formation + Delta-G solvation = -167.673985 kcal Electronic energy + Delta-G solvation = -20611.844461 eV Core-core repulsion = 17321.140176 eV Total energy + Delta-G solvation = -3290.704285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99045 -37.93099 -37.48484 -36.16965 -35.92151 -35.16738 -32.54287 -31.92736 -28.28478 -27.77467 -24.89779 -24.61989 -22.10377 -21.60101 -20.40924 -19.26738 -18.42378 -18.13709 -17.11466 -16.84862 -16.55931 -16.25347 -15.99234 -15.79458 -15.40300 -15.22632 -14.92031 -14.37778 -14.04285 -13.82560 -13.44918 -13.30857 -13.05603 -12.90710 -12.78719 -12.52597 -12.50576 -12.31869 -12.24890 -12.15844 -11.99117 -11.68166 -11.51951 -11.28844 -10.96470 -10.80479 -9.91828 -9.23888 -8.76375 -7.50776 0.28160 1.30473 1.31160 1.48603 2.17900 2.55265 2.70387 2.88964 3.51703 3.77192 3.88137 3.97183 4.05186 4.19066 4.32418 4.33022 4.35137 4.48595 4.54430 4.55880 4.62449 4.70255 4.73123 4.80975 4.86409 4.95590 5.12813 5.14379 5.22867 5.29897 5.34412 5.87551 5.93580 6.05782 6.16642 6.75676 6.94941 8.18975 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.004868 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.125887 B = 5750.379821 C = 6286.662274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.258 1.258 7 C -1.037 5.037 8 H 0.114 0.886 9 S 2.717 3.283 10 O -1.040 7.040 11 O -1.041 7.041 12 N -1.012 6.012 13 C 0.124 3.876 14 C 0.045 3.955 15 N -0.539 5.539 16 C 0.061 3.939 17 C -0.115 4.115 18 C 0.079 3.921 19 O -0.598 6.598 20 C 0.049 3.951 21 C 0.123 3.877 22 H 0.299 0.701 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.032 0.968 26 H 0.105 0.895 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.210 -9.286 0.211 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.172 1.172 5 H -0.183 1.183 6 H -0.182 1.182 7 C -1.170 5.170 8 H 0.132 0.868 9 S 2.820 3.180 10 O -1.030 7.030 11 O -1.031 7.031 12 N -0.851 5.851 13 C -0.001 4.001 14 C -0.084 4.084 15 N -0.264 5.264 16 C -0.066 4.066 17 C -0.153 4.153 18 C 0.001 3.999 19 O -0.407 6.407 20 C -0.081 4.081 21 C -0.003 4.003 22 H 0.109 0.891 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.123 0.877 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.050 0.950 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.216 -9.851 0.119 18.974 hybrid contribution 1.184 1.995 0.039 2.320 sum 17.400 -7.855 0.157 19.092 Atomic orbital electron populations 1.69998 1.08779 1.32292 1.41505 1.26022 0.95360 1.05335 0.87535 0.85101 0.79362 0.75171 0.79503 1.17230 1.18283 1.18181 1.30962 1.06802 1.12693 1.66573 0.86769 1.00049 0.72767 0.73742 0.71457 1.93290 1.74501 1.88334 1.46900 1.93288 1.74549 1.88370 1.46938 1.57793 1.61654 1.53291 1.12317 1.21605 0.94113 0.99710 0.84699 1.22576 0.94390 0.97000 0.94477 1.61841 1.12429 1.50301 1.01802 1.22010 0.86225 0.98350 1.00029 1.21464 0.94918 1.00440 0.98515 1.22120 0.94748 0.93236 0.89828 1.86433 1.30755 1.69591 1.53890 1.22462 0.94375 0.97362 0.93872 1.21551 0.94255 0.99728 0.84731 0.89074 0.90169 0.90499 0.95020 0.87690 0.94502 0.88734 0.91304 0.92160 0.92867 0.92020 0.75260 0.94977 0.86821 0.90278 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.85 13.19 21.45 0.28 -53.57 16 2 C 0.07 3.93 5.46 84.66 0.46 4.39 16 3 Si 0.99 41.42 29.54 68.60 2.03 43.44 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -1.04 -57.69 9.75 67.74 0.66 -57.03 16 8 H 0.11 5.79 7.81 -2.91 -0.02 5.77 16 9 S 2.72 149.59 4.98 -56.49 -0.28 149.30 16 10 O -1.04 -62.96 16.80 -128.00 -2.15 -65.11 16 11 O -1.04 -63.37 16.79 -128.00 -2.15 -65.52 16 12 N -1.01 -41.94 3.32 -511.33 -1.70 -43.64 16 13 C 0.12 4.36 6.56 86.50 0.57 4.93 16 14 C 0.05 1.27 5.48 86.54 0.47 1.74 16 15 N -0.54 -13.44 4.63 -894.33 -4.14 -17.58 16 16 C 0.06 1.14 4.96 86.30 0.43 1.57 16 17 C -0.12 -2.09 5.51 30.60 0.17 -1.92 16 18 C 0.08 1.11 7.05 71.98 0.51 1.61 16 19 O -0.60 -9.71 13.66 -148.98 -2.04 -11.75 16 20 C 0.05 1.29 5.62 86.38 0.49 1.78 16 21 C 0.12 4.18 6.53 86.35 0.56 4.75 16 22 H 0.30 16.09 8.31 -92.70 -0.77 15.32 16 23 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.08 2.91 7.21 -2.38 -0.02 2.90 16 25 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.11 2.46 6.16 -2.39 -0.01 2.45 16 27 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.09 1.41 7.97 -2.39 -0.02 1.39 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.22 6.40 -2.39 -0.02 1.20 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.40 2.58 9.12 -74.05 -0.68 1.90 16 34 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.11 2.25 7.99 -2.39 -0.02 2.23 16 36 H 0.08 2.89 7.22 -2.38 -0.02 2.88 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -78.94 314.45 -5.43 -84.38 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.39 Total: 18.23 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 4.32 Total: -38.19 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -5.56 Total: -114.79 kcal Atomic # 8 Polarization: -136.04 SS G_CDS: -6.33 Total: -142.38 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 149.59 SS G_CDS: -0.28 Total: 149.30 kcal Total: -78.94 -5.43 -84.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.297 kcal (2) G-P(sol) polarization free energy of solvation -78.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds