Wall clock time and date at job start Tue Mar 31 2020 00:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48504 * 109.47261 * 270.00040 * 3 2 1 5 5 H 1.48498 * 109.47315 * 30.00353 * 3 2 1 6 6 H 1.48503 * 109.47004 * 150.00280 * 3 2 1 7 7 C 1.37887 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99694 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99994 * 359.97438 * 7 2 1 10 10 O 1.42103 * 106.39891 * 66.46485 * 9 7 2 11 11 O 1.42098 * 106.40726 * 293.54616 * 9 7 2 12 12 N 1.65598 * 107.21858 * 179.97438 * 9 7 2 13 13 C 1.46499 * 119.99625 * 65.00448 * 12 9 7 14 14 C 1.53121 * 109.52377 * 215.00004 * 13 12 9 15 15 C 1.53030 * 109.28235 * 182.37832 * 14 13 12 16 16 N 1.46847 * 109.52789 * 59.17595 * 15 14 13 17 17 C 1.46893 * 111.00260 * 174.16306 * 16 15 14 18 18 C 1.52998 * 109.46785 * 176.24652 * 17 16 15 19 19 O 1.42897 * 109.47699 * 62.32119 * 18 17 16 20 20 C 1.46848 * 111.19632 * 298.26368 * 16 15 14 21 21 C 1.53038 * 109.52322 * 61.73808 * 20 16 15 22 22 H 0.96999 * 120.00015 * 359.97438 * 1 2 3 23 23 H 0.96994 * 120.00101 * 245.00372 * 12 9 7 24 24 H 1.09001 * 109.52127 * 335.12168 * 13 12 9 25 25 H 1.09000 * 109.50502 * 62.43264 * 14 13 12 26 26 H 1.09003 * 109.50052 * 302.32229 * 14 13 12 27 27 H 1.09008 * 109.45910 * 299.16174 * 15 14 13 28 28 H 1.09000 * 109.45727 * 179.19292 * 15 14 13 29 29 H 1.08997 * 109.47308 * 56.24555 * 17 16 15 30 30 H 1.09000 * 109.47181 * 296.24292 * 17 16 15 31 31 H 1.09001 * 109.47254 * 302.31283 * 18 17 16 32 32 H 1.09006 * 109.47161 * 182.31924 * 18 17 16 33 33 H 0.96699 * 114.00745 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.46287 * 181.75467 * 20 16 15 35 35 H 1.09000 * 109.46096 * 301.71963 * 20 16 15 36 36 H 1.09003 * 109.49993 * 180.88138 * 21 20 16 37 37 H 1.08994 * 109.50703 * 60.76214 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4517 -2.7956 1.2493 12 7 2.2482 -3.9355 -0.0019 13 6 3.1400 -4.1095 1.1472 14 6 4.5135 -4.5814 0.6622 15 6 5.4222 -4.8183 1.8705 16 7 4.8188 -5.8298 2.7476 17 6 5.7276 -6.1837 3.8460 18 6 5.0301 -7.1670 4.7881 19 8 4.7219 -8.3689 4.0792 20 6 3.5201 -5.3786 3.2636 21 6 2.5547 -5.1585 2.0967 22 1 -0.4850 0.8400 0.0004 23 1 2.3164 -4.5322 -0.7636 24 1 3.2457 -3.1606 1.6732 25 1 4.9541 -3.8193 0.0194 26 1 4.4025 -5.5102 0.1027 27 1 5.5439 -3.8857 2.4217 28 1 6.3964 -5.1681 1.5291 29 1 5.9996 -5.2834 4.3970 30 1 6.6268 -6.6462 3.4390 31 1 4.1095 -6.7200 5.1632 32 1 5.6891 -7.3978 5.6252 33 1 4.2777 -9.0393 4.6161 34 1 3.1129 -6.1353 3.9341 35 1 3.6508 -4.4435 3.8082 36 1 1.5957 -4.8086 2.4789 37 1 2.4128 -6.0964 1.5598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:08 Heat of formation + Delta-G solvation = -141.965100 kcal Electronic energy + Delta-G solvation = -20687.400896 eV Core-core repulsion = 17397.811431 eV Total energy + Delta-G solvation = -3289.589465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.22877 -36.92245 -35.19232 -34.71774 -33.89060 -33.06548 -31.05032 -30.62735 -27.86451 -26.11402 -23.83900 -22.80237 -21.18077 -19.81045 -18.83954 -17.59423 -17.28328 -16.57772 -16.09621 -15.38631 -15.00378 -14.84519 -14.27155 -14.22309 -13.98795 -13.58820 -13.37043 -13.20393 -12.70843 -12.28095 -12.04015 -11.91599 -11.43748 -11.33693 -11.21112 -11.05429 -10.95799 -10.64752 -10.58970 -10.44500 -10.23778 -10.13463 -10.05785 -9.83831 -9.23406 -8.93451 -8.44642 -8.21021 -6.68423 -5.29978 2.40441 3.06891 3.13773 3.19734 3.86361 4.07235 4.15616 4.65425 4.72937 4.86205 4.99717 5.01480 5.15689 5.24923 5.28071 5.43780 5.52856 5.58316 5.71448 5.79304 5.80587 5.86820 5.90999 6.00233 6.22510 6.32864 6.43397 6.56664 6.71038 6.99130 7.12492 7.19273 7.34248 7.53070 7.95704 8.03369 8.90648 10.25718 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.004838 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.172779 B = 5786.629559 C = 6201.728936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.009 7.009 11 O -1.006 7.006 12 N -1.132 6.132 13 C 0.161 3.839 14 C -0.122 4.122 15 C 0.057 3.943 16 N -0.529 5.529 17 C 0.054 3.946 18 C 0.074 3.926 19 O -0.557 6.557 20 C 0.054 3.946 21 C -0.134 4.134 22 H 0.290 0.710 23 H 0.401 0.599 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.372 0.628 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 -10.452 8.284 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.815 3.185 10 O -1.000 7.000 11 O -0.996 6.996 12 N -0.884 5.884 13 C 0.053 3.947 14 C -0.161 4.161 15 C -0.071 4.071 16 N -0.254 5.254 17 C -0.074 4.074 18 C -0.005 4.005 19 O -0.361 6.361 20 C -0.075 4.075 21 C -0.173 4.173 22 H 0.101 0.899 23 H 0.232 0.768 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.218 0.782 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.641 -10.458 7.673 16.777 hybrid contribution 0.956 1.452 0.662 1.860 sum 11.597 -9.006 8.335 16.884 Atomic orbital electron populations 1.69900 1.06769 1.30657 1.40157 1.24739 0.94438 1.00767 0.88540 0.86186 0.80129 0.80188 0.79171 1.19191 1.19999 1.18748 1.30593 1.06055 1.12045 1.66817 0.88072 1.00381 0.72111 0.73200 0.72804 1.93369 1.73198 1.87696 1.45708 1.93351 1.72887 1.87536 1.45863 1.56043 1.55462 1.50702 1.26204 1.20562 0.88877 0.98677 0.86588 1.21907 0.94927 1.02031 0.97218 1.22076 0.97726 0.93043 0.94266 1.61945 1.03203 1.41705 1.18582 1.22126 0.96356 0.96585 0.92292 1.22304 0.98512 0.86154 0.93488 1.86634 1.81696 1.26726 1.41038 1.22184 0.89621 0.98483 0.97163 1.22148 0.98972 1.00025 0.96190 0.89933 0.76804 0.89841 0.90717 0.90722 0.94655 0.90748 0.93672 0.90154 0.93176 0.93667 0.78196 0.90399 0.94802 0.89816 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.98 13.19 55.43 0.73 -24.25 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 3 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 7 C -1.02 -28.12 9.58 30.60 0.29 -27.82 16 8 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 9 S 2.72 72.16 4.93 -107.50 -0.53 71.63 16 10 O -1.01 -29.92 18.02 -57.17 -1.03 -30.95 16 11 O -1.01 -29.14 17.37 -57.17 -0.99 -30.13 16 12 N -1.13 -22.63 5.48 -4.79 -0.03 -22.66 16 13 C 0.16 2.83 2.72 -67.81 -0.18 2.65 16 14 C -0.12 -1.73 5.63 -26.65 -0.15 -1.88 16 15 C 0.06 0.72 5.46 -3.84 -0.02 0.70 16 16 N -0.53 -6.81 4.67 -234.68 -1.10 -7.90 16 17 C 0.05 0.56 5.52 -3.83 -0.02 0.54 16 18 C 0.07 0.66 6.67 37.16 0.25 0.91 16 19 O -0.56 -5.77 13.56 -35.23 -0.48 -6.24 16 20 C 0.05 0.74 5.04 -3.83 -0.02 0.72 16 21 C -0.13 -2.19 5.70 -26.65 -0.15 -2.34 16 22 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.40 7.03 8.84 -34.47 -0.30 6.72 16 24 H 0.08 1.57 7.85 -51.93 -0.41 1.17 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.44 6.05 -51.93 -0.31 0.13 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.37 2.16 9.12 45.56 0.42 2.57 16 34 H 0.08 0.97 5.79 -51.93 -0.30 0.67 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 1.53 7.73 -51.93 -0.40 1.13 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -36.26 314.62 -8.47 -44.73 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.66 Total: 8.38 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -0.10 Total: -22.90 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.39 Total: -54.81 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -2.50 Total: -67.33 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 72.16 SS G_CDS: -0.53 Total: 71.63 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.26 -8.47 -44.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.238 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds