Wall clock time and date at job start Tue Mar 31 2020 00:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48504 * 109.47261 * 270.00040 * 3 2 1 5 5 H 1.48498 * 109.47315 * 30.00353 * 3 2 1 6 6 H 1.48503 * 109.47004 * 150.00280 * 3 2 1 7 7 C 1.37887 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99694 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99994 * 359.97438 * 7 2 1 10 10 O 1.42103 * 106.39891 * 66.46485 * 9 7 2 11 11 O 1.42098 * 106.40726 * 293.54616 * 9 7 2 12 12 N 1.65598 * 107.21858 * 179.97438 * 9 7 2 13 13 C 1.46499 * 119.99625 * 65.00448 * 12 9 7 14 14 C 1.53121 * 109.52377 * 215.00004 * 13 12 9 15 15 C 1.53030 * 109.28235 * 182.37832 * 14 13 12 16 16 N 1.46847 * 109.52789 * 59.17595 * 15 14 13 17 17 C 1.46893 * 111.00260 * 174.16306 * 16 15 14 18 18 C 1.52998 * 109.46785 * 176.24652 * 17 16 15 19 19 O 1.42897 * 109.47699 * 62.32119 * 18 17 16 20 20 C 1.46848 * 111.19632 * 298.26368 * 16 15 14 21 21 C 1.53038 * 109.52322 * 61.73808 * 20 16 15 22 22 H 0.96999 * 120.00015 * 359.97438 * 1 2 3 23 23 H 0.96994 * 120.00101 * 245.00372 * 12 9 7 24 24 H 1.09001 * 109.52127 * 335.12168 * 13 12 9 25 25 H 1.09000 * 109.50502 * 62.43264 * 14 13 12 26 26 H 1.09003 * 109.50052 * 302.32229 * 14 13 12 27 27 H 1.09008 * 109.45910 * 299.16174 * 15 14 13 28 28 H 1.09000 * 109.45727 * 179.19292 * 15 14 13 29 29 H 1.08997 * 109.47308 * 56.24555 * 17 16 15 30 30 H 1.09000 * 109.47181 * 296.24292 * 17 16 15 31 31 H 1.09001 * 109.47254 * 302.31283 * 18 17 16 32 32 H 1.09006 * 109.47161 * 182.31924 * 18 17 16 33 33 H 0.96699 * 114.00745 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.46287 * 181.75467 * 20 16 15 35 35 H 1.09000 * 109.46096 * 301.71963 * 20 16 15 36 36 H 1.09003 * 109.49993 * 180.88138 * 21 20 16 37 37 H 1.08994 * 109.50703 * 60.76214 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4517 -2.7956 1.2493 12 7 2.2482 -3.9355 -0.0019 13 6 3.1400 -4.1095 1.1472 14 6 4.5135 -4.5814 0.6622 15 6 5.4222 -4.8183 1.8705 16 7 4.8188 -5.8298 2.7476 17 6 5.7276 -6.1837 3.8460 18 6 5.0301 -7.1670 4.7881 19 8 4.7219 -8.3689 4.0792 20 6 3.5201 -5.3786 3.2636 21 6 2.5547 -5.1585 2.0967 22 1 -0.4850 0.8400 0.0004 23 1 2.3164 -4.5322 -0.7636 24 1 3.2457 -3.1606 1.6732 25 1 4.9541 -3.8193 0.0194 26 1 4.4025 -5.5102 0.1027 27 1 5.5439 -3.8857 2.4217 28 1 6.3964 -5.1681 1.5291 29 1 5.9996 -5.2834 4.3970 30 1 6.6268 -6.6462 3.4390 31 1 4.1095 -6.7200 5.1632 32 1 5.6891 -7.3978 5.6252 33 1 4.2777 -9.0393 4.6161 34 1 3.1129 -6.1353 3.9341 35 1 3.6508 -4.4435 3.8082 36 1 1.5957 -4.8086 2.4789 37 1 2.4128 -6.0964 1.5598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:07 Heat of formation + Delta-G solvation = -175.464942 kcal Electronic energy + Delta-G solvation = -20688.853558 eV Core-core repulsion = 17397.811431 eV Total energy + Delta-G solvation = -3291.042127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.30161 -37.83346 -37.32975 -36.12227 -35.98370 -35.17001 -32.23662 -31.80600 -28.87287 -28.26471 -24.92068 -23.94917 -22.14656 -21.29593 -20.60834 -19.26620 -18.35885 -18.14090 -17.68487 -16.94818 -16.54978 -16.08138 -15.89877 -15.43586 -15.22633 -15.16022 -14.70336 -14.32475 -13.99452 -13.84812 -13.36226 -13.19933 -13.01410 -13.00450 -12.71952 -12.49909 -12.41533 -12.34680 -12.30561 -12.10042 -12.01968 -11.52876 -11.30601 -11.25042 -10.94140 -10.74837 -10.12652 -9.17141 -8.75576 -7.48587 0.37985 1.33725 1.34370 1.50181 2.20572 2.58002 2.93120 2.99261 3.52264 3.69512 3.81898 3.95485 4.06419 4.18368 4.31302 4.33895 4.40873 4.49630 4.52795 4.57161 4.68049 4.74895 4.84222 4.93485 4.95977 5.00188 5.08656 5.21923 5.26007 5.31969 5.52046 5.89790 6.16938 6.20514 6.42968 6.77909 7.03303 8.21040 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.004838 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.172779 B = 5786.629559 C = 6201.728936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.246 1.246 7 C -1.040 5.040 8 H 0.120 0.880 9 S 2.719 3.281 10 O -1.049 7.049 11 O -1.040 7.040 12 N -1.116 6.116 13 C 0.152 3.848 14 C -0.114 4.114 15 C 0.058 3.942 16 N -0.539 5.539 17 C 0.050 3.950 18 C 0.072 3.928 19 O -0.582 6.582 20 C 0.061 3.939 21 C -0.132 4.132 22 H 0.299 0.701 23 H 0.414 0.586 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.390 0.610 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.267 -10.386 8.992 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.170 1.170 7 C -1.174 5.174 8 H 0.138 0.862 9 S 2.820 3.180 10 O -1.039 7.039 11 O -1.030 7.030 12 N -0.874 5.874 13 C 0.045 3.955 14 C -0.154 4.154 15 C -0.070 4.070 16 N -0.264 5.264 17 C -0.078 4.078 18 C -0.005 4.005 19 O -0.389 6.389 20 C -0.068 4.068 21 C -0.172 4.172 22 H 0.109 0.891 23 H 0.248 0.752 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.315 -10.436 8.389 18.883 hybrid contribution 0.131 1.313 0.464 1.398 sum 13.445 -9.123 8.853 18.503 Atomic orbital electron populations 1.69996 1.08821 1.32314 1.41449 1.26033 0.95365 1.05414 0.87538 0.85125 0.79172 0.74782 0.80064 1.17908 1.18718 1.16951 1.30917 1.07160 1.12608 1.66703 0.86172 0.99900 0.72627 0.73982 0.71478 1.93305 1.75033 1.88492 1.47078 1.93302 1.74513 1.88237 1.46950 1.55453 1.54825 1.49391 1.27702 1.20848 0.90376 0.98503 0.85794 1.21869 0.92858 1.02360 0.98290 1.22107 0.98066 0.93358 0.93482 1.61933 1.03219 1.41550 1.19735 1.22260 0.96073 0.97496 0.91937 1.22356 0.98936 0.85601 0.93639 1.86573 1.82153 1.27626 1.42525 1.22074 0.89877 0.98922 0.95905 1.22080 0.98535 0.99511 0.97072 0.89130 0.75203 0.91453 0.90026 0.90068 0.94500 0.88468 0.92425 0.89647 0.93242 0.91236 0.76165 0.89137 0.95004 0.92632 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.84 13.19 21.45 0.28 -53.55 16 2 C 0.07 3.87 5.46 84.66 0.46 4.33 16 3 Si 0.99 41.21 29.54 68.60 2.03 43.24 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -1.04 -57.46 9.58 67.74 0.65 -56.81 16 8 H 0.12 5.94 7.81 -2.91 -0.02 5.91 16 9 S 2.72 148.29 4.93 -56.49 -0.28 148.01 16 10 O -1.05 -64.11 18.02 -128.00 -2.31 -66.42 16 11 O -1.04 -62.51 17.37 -128.00 -2.22 -64.73 16 12 N -1.12 -45.00 5.48 -169.06 -0.93 -45.92 16 13 C 0.15 5.29 2.72 45.07 0.12 5.41 16 14 C -0.11 -3.03 5.63 30.64 0.17 -2.86 16 15 C 0.06 1.31 5.46 86.32 0.47 1.78 16 16 N -0.54 -12.63 4.67 -896.39 -4.19 -16.82 16 17 C 0.05 0.89 5.52 86.30 0.48 1.37 16 18 C 0.07 1.12 6.67 71.98 0.48 1.60 16 19 O -0.58 -10.74 13.56 -148.98 -2.02 -12.76 16 20 C 0.06 1.59 5.04 86.33 0.44 2.03 16 21 C -0.13 -4.34 5.70 30.65 0.17 -4.16 16 22 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 23 H 0.41 14.48 8.84 -96.75 -0.86 13.63 16 24 H 0.07 2.55 7.85 -2.39 -0.02 2.53 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 0.82 8.14 -2.38 -0.02 0.81 16 28 H 0.10 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 0.76 6.05 -2.39 -0.01 0.74 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.39 3.73 9.12 -74.06 -0.68 3.06 16 34 H 0.09 2.13 5.79 -2.39 -0.01 2.12 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 2.11 7.73 -2.39 -0.02 2.09 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -79.09 314.62 -6.63 -85.72 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.44 Total: 30.57 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 3.44 Total: -47.33 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.83 Total: -116.29 kcal Atomic # 8 Polarization: -137.36 SS G_CDS: -6.55 Total: -143.91 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 148.29 SS G_CDS: -0.28 Total: 148.01 kcal Total: -79.09 -6.63 -85.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.748 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds