Wall clock time and date at job start Tue Mar 31 2020 00:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47214 * 269.99559 * 3 2 1 5 5 H 1.48494 * 109.47228 * 30.00353 * 3 2 1 6 6 H 1.48510 * 109.46841 * 150.00340 * 3 2 1 7 7 C 1.37880 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99592 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40134 * 66.45937 * 9 7 2 11 11 O 1.42102 * 106.40088 * 293.53419 * 9 7 2 12 12 N 1.65603 * 107.21368 * 179.97438 * 9 7 2 13 13 C 1.46498 * 120.00113 * 65.00146 * 12 9 7 14 14 C 1.53001 * 109.47413 * 164.99695 * 13 12 9 15 15 N 1.46895 * 109.47473 * 179.97438 * 14 13 12 16 16 C 1.46843 * 110.99970 * 294.21132 * 15 14 13 17 17 C 1.53042 * 109.52278 * 174.15687 * 16 15 14 18 18 C 1.53127 * 109.27596 * 59.17923 * 17 16 15 19 19 C 1.53123 * 109.15019 * 302.34079 * 18 17 16 20 20 H 1.08997 * 109.51083 * 297.71779 * 19 18 17 21 21 O 1.42906 * 109.49151 * 177.60597 * 19 18 17 22 22 C 1.46847 * 110.99982 * 169.99767 * 15 14 13 23 23 H 0.97001 * 120.00025 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00199 * 244.99520 * 12 9 7 25 25 H 1.09000 * 109.47448 * 44.99861 * 13 12 9 26 26 H 1.09003 * 109.47264 * 284.99734 * 13 12 9 27 27 H 1.09000 * 109.46678 * 59.99695 * 14 13 12 28 28 H 1.09003 * 109.46937 * 300.00239 * 14 13 12 29 29 H 1.08993 * 109.46313 * 294.17341 * 16 15 14 30 30 H 1.09004 * 109.46429 * 54.14692 * 16 15 14 31 31 H 1.08997 * 109.50758 * 179.11703 * 17 16 15 32 32 H 1.08999 * 109.50480 * 299.24136 * 17 16 15 33 33 H 1.09003 * 109.52393 * 62.24889 * 18 17 16 34 34 H 1.08997 * 109.52177 * 182.37978 * 18 17 16 35 35 H 0.96703 * 113.99567 * 60.19870 * 21 19 18 36 36 H 1.09002 * 109.46481 * 305.85957 * 22 15 14 37 37 H 1.08994 * 109.46283 * 65.83811 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1672 -0.6505 1.2503 11 8 4.1682 -0.6489 -1.2491 12 7 4.2566 -2.7760 0.0000 13 6 3.9617 -3.6341 -1.1502 14 6 4.8204 -4.8982 -1.0769 15 7 4.5243 -5.7590 -2.2298 16 6 3.1462 -6.2625 -2.1704 17 6 2.8272 -7.0325 -3.4540 18 6 3.8101 -8.1972 -3.6022 19 6 5.2400 -7.6496 -3.6129 20 1 5.3718 -6.9925 -4.4725 21 8 6.1658 -8.7352 -3.6949 22 6 5.4891 -6.8620 -2.3246 23 1 -0.4850 0.8400 0.0004 24 1 4.7390 -3.1343 0.7613 25 1 4.1850 -3.0962 -2.0716 26 1 2.9072 -3.9099 -1.1369 27 1 4.5972 -5.4361 -0.1555 28 1 5.8749 -4.6224 -1.0902 29 1 3.0387 -6.9262 -1.3125 30 1 2.4571 -5.4239 -2.0693 31 1 1.8095 -7.4194 -3.4029 32 1 2.9211 -6.3658 -4.3112 33 1 3.6894 -8.8846 -2.7649 34 1 3.6135 -8.7231 -4.5365 35 1 6.0653 -9.2786 -4.4884 36 1 6.5018 -6.4589 -2.3354 37 1 5.3705 -7.5230 -1.4662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:39 Heat of formation + Delta-G solvation = -132.261315 kcal Electronic energy + Delta-G solvation = -20223.891656 eV Core-core repulsion = 16934.722979 eV Total energy + Delta-G solvation = -3289.168677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.53165 -36.85920 -35.61982 -34.82287 -34.40611 -33.02473 -32.65235 -30.02792 -27.72387 -26.39497 -24.18888 -23.06141 -21.44083 -20.03010 -19.09525 -17.65904 -17.39033 -16.65687 -16.04409 -15.78949 -15.26071 -14.92835 -14.66857 -14.50659 -13.95091 -13.77967 -13.44423 -13.33225 -13.19654 -12.85992 -12.69927 -12.10105 -11.74895 -11.42169 -11.37430 -11.28060 -11.12644 -10.92161 -10.74470 -10.59907 -10.54611 -10.47089 -10.05126 -9.82761 -9.20329 -9.19752 -8.55448 -8.44962 -6.79455 -5.33195 2.08112 3.08703 3.19646 3.28604 3.44344 3.96934 4.23186 4.43460 4.53808 4.60725 4.61481 4.80899 5.00358 5.05499 5.18948 5.28870 5.33332 5.36798 5.46810 5.53663 5.60300 5.68481 5.76646 5.79988 5.89449 6.08605 6.12821 6.16748 6.26586 6.57282 6.94711 6.96417 7.37444 7.48514 7.74014 8.20965 8.71724 10.32899 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034804 B = 0.004088 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.319975 B = 6847.204452 C = 7298.434088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.803 3.197 4 H -0.246 1.246 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.120 0.880 9 S 2.678 3.322 10 O -1.009 7.009 11 O -1.010 7.010 12 N -1.126 6.126 13 C 0.128 3.872 14 C 0.052 3.948 15 N -0.533 5.533 16 C 0.043 3.957 17 C -0.115 4.115 18 C -0.153 4.153 19 C 0.107 3.893 20 H 0.067 0.933 21 O -0.571 6.571 22 C 0.065 3.935 23 H 0.280 0.720 24 H 0.404 0.596 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.379 0.621 36 H 0.082 0.918 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -15.757 -6.456 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.066 4.066 3 Si 0.623 3.377 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.138 0.862 9 S 2.780 3.220 10 O -0.999 6.999 11 O -1.000 7.000 12 N -0.882 5.882 13 C 0.001 3.999 14 C -0.077 4.077 15 N -0.259 5.259 16 C -0.085 4.085 17 C -0.153 4.153 18 C -0.191 4.191 19 C 0.048 3.952 20 H 0.085 0.915 21 O -0.376 6.376 22 C -0.064 4.064 23 H 0.091 0.909 24 H 0.235 0.765 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.100 0.900 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.271 -14.341 -6.482 17.336 hybrid contribution -0.665 -0.533 0.544 1.011 sum 6.605 -14.873 -5.937 17.323 Atomic orbital electron populations 1.69988 1.06611 1.29034 1.39712 1.24430 0.94789 0.98847 0.88572 0.87843 0.83562 0.84461 0.81849 1.16967 1.17965 1.14212 1.30465 1.15716 1.02119 1.66707 0.86168 1.01265 0.77259 0.70295 0.73222 1.93474 1.85536 1.75865 1.45068 1.93408 1.85001 1.75995 1.45588 1.55457 1.74424 1.31629 1.26648 1.21061 0.98609 0.90756 0.89464 1.22279 1.00961 0.93454 0.90987 1.61660 1.02563 1.19236 1.42459 1.22307 0.90056 0.99197 0.96899 1.21540 0.98560 0.96584 0.98644 1.22332 0.95759 0.98678 1.02314 1.21754 0.87411 0.87620 0.98458 0.91535 1.86449 1.58715 1.44343 1.48074 1.21847 0.96820 0.91785 0.95907 0.90927 0.76474 0.89579 0.91851 0.94066 0.89912 0.94576 0.89150 0.90964 0.90589 0.91516 0.91646 0.77371 0.89954 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.77 13.96 55.43 0.77 -23.00 16 2 C 0.15 4.39 5.47 -17.82 -0.10 4.30 16 3 Si 0.80 20.63 26.54 -169.99 -4.51 16.12 16 4 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.22 -5.76 5.61 56.52 0.32 -5.44 16 7 C -1.02 -28.18 10.26 30.60 0.31 -27.87 16 8 H 0.12 3.34 8.06 -52.48 -0.42 2.92 16 9 S 2.68 66.34 4.24 -107.50 -0.46 65.88 16 10 O -1.01 -26.95 16.02 -57.17 -0.92 -27.86 16 11 O -1.01 -26.90 16.30 -57.17 -0.93 -27.84 16 12 N -1.13 -21.01 6.00 -10.61 -0.06 -21.08 16 13 C 0.13 2.11 6.15 -4.04 -0.02 2.09 16 14 C 0.05 0.68 5.10 -3.83 -0.02 0.66 16 15 N -0.53 -6.47 4.66 -234.68 -1.09 -7.56 16 16 C 0.04 0.49 5.29 -3.83 -0.02 0.47 16 17 C -0.12 -1.08 6.09 -26.64 -0.16 -1.24 16 18 C -0.15 -1.29 5.63 -26.60 -0.15 -1.44 16 19 C 0.11 1.02 3.63 -26.65 -0.10 0.92 16 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 21 O -0.57 -5.26 13.32 -35.23 -0.47 -5.73 16 22 C 0.06 0.71 5.11 -3.84 -0.02 0.69 16 23 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.40 6.36 8.65 -34.47 -0.30 6.06 16 25 H 0.09 1.52 7.75 -51.93 -0.40 1.12 16 26 H 0.06 1.04 6.43 -51.93 -0.33 0.70 16 27 H 0.04 0.50 8.12 -51.93 -0.42 0.07 16 28 H 0.08 1.01 7.99 -51.93 -0.41 0.60 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 1.10 6.21 -51.93 -0.32 0.78 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 1.83 9.08 45.56 0.41 2.25 16 36 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -33.70 309.21 -8.08 -41.78 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.80 Total: 6.04 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -0.28 Total: -21.43 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.38 Total: -51.63 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -2.32 Total: -61.43 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.51 Total: 16.12 kcal Atomic # 16 Polarization: 66.34 SS G_CDS: -0.46 Total: 65.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.70 -8.08 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.485 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds