Wall clock time and date at job start Tue Mar 31 2020 00:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47214 * 269.99559 * 3 2 1 5 5 H 1.48494 * 109.47228 * 30.00353 * 3 2 1 6 6 H 1.48510 * 109.46841 * 150.00340 * 3 2 1 7 7 C 1.37880 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99592 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40134 * 66.45937 * 9 7 2 11 11 O 1.42102 * 106.40088 * 293.53419 * 9 7 2 12 12 N 1.65603 * 107.21368 * 179.97438 * 9 7 2 13 13 C 1.46498 * 120.00113 * 65.00146 * 12 9 7 14 14 C 1.53001 * 109.47413 * 164.99695 * 13 12 9 15 15 N 1.46895 * 109.47473 * 179.97438 * 14 13 12 16 16 C 1.46843 * 110.99970 * 294.21132 * 15 14 13 17 17 C 1.53042 * 109.52278 * 174.15687 * 16 15 14 18 18 C 1.53127 * 109.27596 * 59.17923 * 17 16 15 19 19 C 1.53123 * 109.15019 * 302.34079 * 18 17 16 20 20 H 1.08997 * 109.51083 * 297.71779 * 19 18 17 21 21 O 1.42906 * 109.49151 * 177.60597 * 19 18 17 22 22 C 1.46847 * 110.99982 * 169.99767 * 15 14 13 23 23 H 0.97001 * 120.00025 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00199 * 244.99520 * 12 9 7 25 25 H 1.09000 * 109.47448 * 44.99861 * 13 12 9 26 26 H 1.09003 * 109.47264 * 284.99734 * 13 12 9 27 27 H 1.09000 * 109.46678 * 59.99695 * 14 13 12 28 28 H 1.09003 * 109.46937 * 300.00239 * 14 13 12 29 29 H 1.08993 * 109.46313 * 294.17341 * 16 15 14 30 30 H 1.09004 * 109.46429 * 54.14692 * 16 15 14 31 31 H 1.08997 * 109.50758 * 179.11703 * 17 16 15 32 32 H 1.08999 * 109.50480 * 299.24136 * 17 16 15 33 33 H 1.09003 * 109.52393 * 62.24889 * 18 17 16 34 34 H 1.08997 * 109.52177 * 182.37978 * 18 17 16 35 35 H 0.96703 * 113.99567 * 60.19870 * 21 19 18 36 36 H 1.09002 * 109.46481 * 305.85957 * 22 15 14 37 37 H 1.08994 * 109.46283 * 65.83811 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1672 -0.6505 1.2503 11 8 4.1682 -0.6489 -1.2491 12 7 4.2566 -2.7760 0.0000 13 6 3.9617 -3.6341 -1.1502 14 6 4.8204 -4.8982 -1.0769 15 7 4.5243 -5.7590 -2.2298 16 6 3.1462 -6.2625 -2.1704 17 6 2.8272 -7.0325 -3.4540 18 6 3.8101 -8.1972 -3.6022 19 6 5.2400 -7.6496 -3.6129 20 1 5.3718 -6.9925 -4.4725 21 8 6.1658 -8.7352 -3.6949 22 6 5.4891 -6.8620 -2.3246 23 1 -0.4850 0.8400 0.0004 24 1 4.7390 -3.1343 0.7613 25 1 4.1850 -3.0962 -2.0716 26 1 2.9072 -3.9099 -1.1369 27 1 4.5972 -5.4361 -0.1555 28 1 5.8749 -4.6224 -1.0902 29 1 3.0387 -6.9262 -1.3125 30 1 2.4571 -5.4239 -2.0693 31 1 1.8095 -7.4194 -3.4029 32 1 2.9211 -6.3658 -4.3112 33 1 3.6894 -8.8846 -2.7649 34 1 3.6135 -8.7231 -4.5365 35 1 6.0653 -9.2786 -4.4884 36 1 6.5018 -6.4589 -2.3354 37 1 5.3705 -7.5230 -1.4662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:38 Heat of formation + Delta-G solvation = -163.039766 kcal Electronic energy + Delta-G solvation = -20225.226310 eV Core-core repulsion = 16934.722979 eV Total energy + Delta-G solvation = -3290.503331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37469 -37.84044 -37.58289 -36.48816 -36.06197 -35.17417 -33.61582 -30.88328 -28.86488 -28.53658 -25.21097 -23.86756 -22.53642 -21.10237 -20.78653 -19.49149 -18.64690 -18.19699 -17.40768 -17.14499 -16.64995 -16.27956 -15.92187 -15.44525 -15.40294 -15.17437 -15.01754 -14.67929 -14.54183 -14.17633 -13.60956 -13.51951 -13.38521 -13.03887 -12.74060 -12.69805 -12.59676 -12.52241 -12.33194 -11.93287 -11.81082 -11.73684 -11.34181 -11.31898 -11.19712 -10.74676 -10.21376 -9.38937 -8.95562 -7.51603 0.14605 1.06710 1.16302 1.23382 1.90710 2.37885 2.45592 2.80661 3.32456 3.53864 3.77842 3.82021 3.95994 4.02814 4.10836 4.25843 4.28142 4.42288 4.50108 4.56637 4.65394 4.71584 4.73632 4.91121 4.95028 4.98849 5.07588 5.12704 5.17927 5.39491 5.40133 5.97398 6.02012 6.05985 6.31344 6.54912 6.89690 8.21985 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034804 B = 0.004088 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.319975 B = 6847.204452 C = 7298.434088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.109 3.891 3 Si 0.825 3.175 4 H -0.239 1.239 5 H -0.221 1.221 6 H -0.229 1.229 7 C -1.038 5.038 8 H 0.107 0.893 9 S 2.702 3.298 10 O -1.028 7.028 11 O -1.029 7.029 12 N -1.109 6.109 13 C 0.123 3.877 14 C 0.060 3.940 15 N -0.540 5.540 16 C 0.038 3.962 17 C -0.113 4.113 18 C -0.146 4.146 19 C 0.110 3.890 20 H 0.065 0.935 21 O -0.584 6.584 22 C 0.063 3.937 23 H 0.291 0.709 24 H 0.420 0.580 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.398 0.602 36 H 0.080 0.920 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -16.701 -6.871 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.108 4.108 3 Si 0.642 3.358 4 H -0.162 1.162 5 H -0.143 1.143 6 H -0.151 1.151 7 C -1.171 5.171 8 H 0.125 0.875 9 S 2.801 3.199 10 O -1.018 7.018 11 O -1.019 7.019 12 N -0.871 5.871 13 C -0.004 4.004 14 C -0.069 4.069 15 N -0.267 5.267 16 C -0.089 4.089 17 C -0.151 4.151 18 C -0.183 4.183 19 C 0.051 3.949 20 H 0.083 0.917 21 O -0.392 6.392 22 C -0.065 4.065 23 H 0.101 0.899 24 H 0.256 0.744 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.099 0.901 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.012 -15.293 -6.898 18.591 hybrid contribution -0.897 -0.362 0.647 1.164 sum 7.115 -15.655 -6.250 18.297 Atomic orbital electron populations 1.70010 1.07463 1.30468 1.40464 1.25157 0.95621 1.01452 0.88565 0.87486 0.82885 0.82805 0.82604 1.16221 1.14288 1.15098 1.30978 1.18051 1.01700 1.66328 0.87483 1.00385 0.75688 0.71529 0.72292 1.93439 1.85254 1.77397 1.45743 1.93380 1.84691 1.77432 1.46348 1.54917 1.73927 1.30096 1.28119 1.21219 0.99527 0.91763 0.87861 1.22155 1.00620 0.92082 0.92088 1.61636 1.03242 1.19858 1.41955 1.22365 0.89365 0.98966 0.98243 1.21534 0.99590 0.96708 0.97283 1.22273 0.94613 0.98143 1.03308 1.21655 0.88103 0.87745 0.97435 0.91682 1.86404 1.58712 1.44474 1.49588 1.21877 0.96331 0.91462 0.96820 0.89852 0.74446 0.90878 0.91987 0.92800 0.88904 0.94247 0.90597 0.89776 0.91044 0.91785 0.89552 0.75169 0.90112 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.34 13.96 21.45 0.30 -49.04 16 2 C 0.11 6.24 5.47 84.66 0.46 6.71 16 3 Si 0.83 41.10 26.54 68.60 1.82 42.92 16 4 H -0.24 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.22 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.23 -11.67 5.61 99.48 0.56 -11.11 16 7 C -1.04 -58.07 10.26 67.74 0.69 -57.37 16 8 H 0.11 6.08 8.06 -2.91 -0.02 6.06 16 9 S 2.70 132.68 4.24 -56.49 -0.24 132.44 16 10 O -1.03 -54.15 16.02 -128.00 -2.05 -56.20 16 11 O -1.03 -54.32 16.30 -128.00 -2.09 -56.41 16 12 N -1.11 -40.42 6.00 -187.49 -1.12 -41.54 16 13 C 0.12 3.98 6.15 86.38 0.53 4.51 16 14 C 0.06 1.47 5.10 86.30 0.44 1.91 16 15 N -0.54 -12.46 4.66 -896.39 -4.17 -16.64 16 16 C 0.04 0.83 5.29 86.33 0.46 1.28 16 17 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 18 C -0.15 -2.12 5.63 30.68 0.17 -1.94 16 19 C 0.11 1.88 3.63 30.65 0.11 1.99 16 20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 21 O -0.58 -9.48 13.32 -148.98 -1.98 -11.46 16 22 C 0.06 1.29 5.11 86.32 0.44 1.73 16 23 H 0.29 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.42 12.57 8.65 -96.75 -0.84 11.74 16 25 H 0.07 2.57 7.75 -2.39 -0.02 2.55 16 26 H 0.06 2.03 6.43 -2.39 -0.02 2.02 16 27 H 0.05 1.19 8.12 -2.39 -0.02 1.18 16 28 H 0.09 2.10 7.99 -2.39 -0.02 2.08 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.84 6.21 -2.38 -0.01 1.82 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.40 2.86 9.08 -74.06 -0.67 2.19 16 36 H 0.08 1.65 8.02 -2.39 -0.02 1.63 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -70.53 309.21 -6.62 -77.15 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.57 Total: 21.74 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 3.50 Total: -42.95 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -5.00 Total: -107.22 kcal Atomic # 8 Polarization: -117.95 SS G_CDS: -6.12 Total: -124.08 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.82 Total: 42.92 kcal Atomic # 16 Polarization: 132.68 SS G_CDS: -0.24 Total: 132.44 kcal Total: -70.53 -6.62 -77.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.891 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds