Wall clock time and date at job start Mon Mar 30 2020 23:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 119.99599 * 2 1 4 4 H 1.48497 * 109.47118 * 239.99852 * 3 2 1 5 5 H 1.48499 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47011 * 120.00044 * 3 2 1 7 7 C 1.38628 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00008 * 179.97438 * 7 2 1 9 9 O 1.34926 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.42897 * 116.99936 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.88084 * 333.84301 * 10 9 7 12 12 C 1.55398 * 111.05846 * 97.58573 * 10 9 7 13 13 C 1.54322 * 102.90031 * 153.64609 * 12 10 9 14 14 N 1.47439 * 107.36952 * 337.89642 * 13 12 10 15 15 C 1.39680 * 110.99946 * 236.65699 * 14 13 12 16 16 C 1.38933 * 120.07213 * 59.85511 * 15 14 13 17 17 C 1.38078 * 119.92144 * 179.71930 * 16 15 14 18 18 C 1.38310 * 120.07766 * 0.55650 * 17 16 15 19 19 C 1.38255 * 120.14613 * 359.71657 * 18 17 16 20 20 C 1.38126 * 120.07933 * 0.02562 * 19 18 17 21 21 N 1.48007 * 120.04090 * 179.97438 * 20 19 18 22 22 O 1.21799 * 119.99675 * 0.02562 * 21 20 19 23 23 O 1.21800 * 120.00021 * 180.02562 * 21 20 19 24 24 C 1.47843 * 108.57210 * 358.92676 * 14 13 12 25 25 H 0.96998 * 120.00642 * 359.97438 * 1 2 3 26 26 H 1.09005 * 110.67856 * 35.34486 * 12 10 9 27 27 H 1.08997 * 110.84583 * 272.02811 * 12 10 9 28 28 H 1.09002 * 109.89036 * 218.40745 * 13 12 10 29 29 H 1.09003 * 109.88743 * 97.38054 * 13 12 10 30 30 H 1.08006 * 120.03333 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.95962 * 180.29270 * 17 16 15 32 32 H 1.07994 * 119.92355 * 179.69956 * 18 17 16 33 33 H 1.07999 * 119.96078 * 180.02562 * 19 18 17 34 34 H 1.08996 * 110.37823 * 142.92442 * 24 14 13 35 35 H 1.09002 * 110.37399 * 265.26957 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0891 -1.2005 0.0001 9 8 1.3345 -2.3691 0.0005 10 6 2.1129 -3.5674 0.0005 11 1 3.0910 -3.3953 -0.4484 12 6 2.2565 -4.1400 1.4380 13 6 2.4720 -5.6476 1.1885 14 7 1.9284 -5.9548 -0.1471 15 6 0.9597 -6.9585 -0.0745 16 6 -0.1823 -6.7696 0.6937 17 6 -1.1406 -7.7616 0.7587 18 6 -0.9592 -8.9468 0.0692 19 6 0.1788 -9.1403 -0.6917 20 6 1.1389 -8.1500 -0.7653 21 7 2.3571 -8.3583 -1.5797 22 8 2.5132 -9.4032 -2.1858 23 8 3.2036 -7.4848 -1.6437 24 6 1.3646 -4.7151 -0.7226 25 1 -0.4851 0.8400 0.0004 26 1 1.3457 -3.9708 2.0125 27 1 3.1188 -3.7059 1.9441 28 1 1.9450 -6.2279 1.9459 29 1 3.5366 -5.8798 1.2179 30 1 -0.3223 -5.8462 1.2362 31 1 -2.0309 -7.6135 1.3519 32 1 -1.7081 -9.7229 0.1257 33 1 0.3172 -10.0667 -1.2291 34 1 1.5536 -4.6745 -1.7953 35 1 0.2948 -4.6560 -0.5223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:49 Heat of formation + Delta-G solvation = -5.503760 kcal Electronic energy + Delta-G solvation = -21564.022079 eV Core-core repulsion = 18144.906071 eV Total energy + Delta-G solvation = -3419.116008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.12415 -41.41602 -39.38549 -37.69483 -37.28382 -34.08678 -33.13217 -32.66664 -30.09481 -29.44839 -27.24754 -26.56923 -24.34213 -23.31224 -22.05538 -21.90230 -20.22847 -19.81135 -19.48010 -18.41088 -18.23040 -17.31193 -16.94309 -16.26715 -16.15058 -15.60069 -15.45245 -14.97863 -14.85817 -14.60492 -14.05811 -13.77178 -13.46249 -13.35853 -12.98304 -12.80235 -12.62547 -12.52467 -12.48946 -12.18252 -12.07151 -12.06145 -11.92711 -11.39493 -11.22812 -10.60564 -10.18133 -10.11121 -9.68152 -8.19622 -5.88681 -1.14213 -0.14012 0.40434 0.55561 1.40199 1.47167 1.53873 2.22320 2.29688 2.48058 3.13481 3.40557 3.50666 3.61956 3.72104 3.83411 3.95104 3.99033 4.04271 4.12613 4.18193 4.43277 4.56025 4.66062 4.72901 4.77929 4.85428 4.97697 5.08766 5.09567 5.13602 5.24498 5.28721 5.46893 5.51972 6.00254 6.19541 6.69548 7.23926 7.99810 9.04362 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.004310 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.189038 B = 6494.933593 C = 7013.300524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.037 4.037 3 Si 1.002 2.998 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.375 4.375 8 H 0.072 0.928 9 O -0.316 6.316 10 C 0.082 3.918 11 H 0.053 0.947 12 C -0.149 4.149 13 C 0.060 3.940 14 N -0.494 5.494 15 C 0.138 3.862 16 C -0.160 4.160 17 C -0.043 4.043 18 C -0.105 4.105 19 C -0.054 4.054 20 C -0.053 4.053 21 N 0.031 4.969 22 O -0.198 6.198 23 O -0.153 6.153 24 C 0.065 3.935 25 H 0.261 0.739 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.179 0.821 32 H 0.192 0.808 33 H 0.170 0.830 34 H 0.073 0.927 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -18.714 3.961 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.231 4.231 3 Si 0.824 3.176 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.454 4.454 8 H 0.090 0.910 9 O -0.231 6.231 10 C 0.023 3.977 11 H 0.071 0.929 12 C -0.188 4.188 13 C -0.065 4.065 14 N -0.217 5.217 15 C 0.042 3.958 16 C -0.181 4.181 17 C -0.061 4.061 18 C -0.123 4.123 19 C -0.073 4.073 20 C -0.138 4.138 21 N 0.547 4.453 22 O -0.405 6.405 23 O -0.372 6.372 24 C -0.061 4.061 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.196 0.804 32 H 0.209 0.791 33 H 0.188 0.812 34 H 0.091 0.909 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.306 -18.734 4.007 19.441 hybrid contribution 0.489 1.281 0.025 1.371 sum -2.818 -17.453 4.033 18.133 Atomic orbital electron populations 1.70162 1.07443 1.27309 1.53332 1.26132 0.96702 1.01750 0.98475 0.84876 0.77296 0.76175 0.79262 1.19146 1.20409 1.18807 1.21313 0.90781 0.83255 1.50064 0.91013 1.85565 1.33314 1.11463 1.92764 1.23068 0.93931 0.86058 0.94685 0.92921 1.23190 1.02600 0.95068 0.97948 1.22842 1.01682 0.94874 0.87141 1.61312 1.30466 1.06546 1.23346 1.19007 0.92187 0.90909 0.93723 1.22058 0.93785 1.02055 1.00188 1.21993 0.98165 0.91199 0.94772 1.21730 0.96622 0.98981 0.95012 1.21423 0.91293 0.97797 0.96799 1.21422 0.89409 0.99210 1.03728 1.43777 1.02630 0.99529 0.99410 1.94439 1.84374 1.16420 1.45292 1.94645 1.37615 1.37189 1.67765 1.22885 0.97571 0.86523 0.99104 0.93044 0.91533 0.90115 0.90580 0.89103 0.84202 0.80391 0.79106 0.81212 0.90878 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.67 21.61 0.30 -58.37 16 2 C -0.04 -2.16 5.49 84.82 0.47 -1.69 16 3 Si 1.00 44.66 29.55 68.60 2.03 46.69 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.38 -21.85 9.82 67.91 0.67 -21.19 16 8 H 0.07 3.92 7.63 -2.91 -0.02 3.90 16 9 O -0.32 -17.95 9.59 -81.95 -0.79 -18.74 16 10 C 0.08 3.61 3.58 32.07 0.11 3.73 16 11 H 0.05 2.37 7.81 -2.39 -0.02 2.35 16 12 C -0.15 -5.31 6.71 31.87 0.21 -5.09 16 13 C 0.06 1.76 6.52 86.65 0.57 2.33 16 14 N -0.49 -16.24 3.04 -685.15 -2.08 -18.32 16 15 C 0.14 3.83 4.62 38.21 0.18 4.01 16 16 C -0.16 -3.50 7.81 22.40 0.17 -3.33 16 17 C -0.04 -0.56 10.04 22.25 0.22 -0.34 16 18 C -0.11 -1.14 10.04 22.29 0.22 -0.92 16 19 C -0.05 -0.94 9.55 22.25 0.21 -0.73 16 20 C -0.05 -1.42 6.87 36.51 0.25 -1.17 16 21 N 0.03 1.02 4.45 -46.16 -0.21 0.82 16 22 O -0.20 -6.30 18.45 18.89 0.35 -5.95 16 23 O -0.15 -5.72 17.10 18.89 0.32 -5.40 16 24 C 0.07 2.51 6.29 86.78 0.55 3.06 16 25 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.08 1.90 7.01 -2.39 -0.02 1.88 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.14 3.28 7.73 -2.91 -0.02 3.26 16 31 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 33 H 0.17 2.34 7.61 -2.91 -0.02 2.32 16 34 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.05 2.14 6.80 -2.39 -0.02 2.12 16 Total: -1.00 -75.45 306.11 4.86 -70.59 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.11 Total: 10.01 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.83 Total: -21.33 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.99 Total: -75.87 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.11 Total: -30.09 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.45 4.86 -70.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.088 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds