Wall clock time and date at job start Tue Mar 31 2020 00:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47116 * 239.99703 * 3 2 1 5 5 H 1.48504 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47016 * 119.99544 * 3 2 1 7 7 C 1.37881 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99632 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47013 * 299.99630 * 9 7 2 11 11 C 1.52992 * 109.47273 * 59.99740 * 9 7 2 12 12 Cl 1.80305 * 109.47426 * 185.00007 * 11 9 7 13 13 O 1.42896 * 109.47104 * 179.97438 * 9 7 2 14 14 C 1.42906 * 114.00065 * 149.99569 * 13 9 7 15 15 C 1.52997 * 109.46950 * 180.02562 * 14 13 9 16 16 O 1.42895 * 109.47456 * 65.00555 * 15 14 13 17 17 C 1.42897 * 114.00383 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.48170 * 54.99805 * 17 16 15 19 19 C 1.53098 * 109.48005 * 175.02232 * 17 16 15 20 20 C 1.53178 * 109.15976 * 177.60179 * 19 17 16 21 21 C 1.53179 * 109.03547 * 303.01729 * 20 19 17 22 22 C 1.53088 * 109.16372 * 56.98571 * 21 20 19 23 23 O 1.42903 * 109.48597 * 294.96962 * 17 16 15 24 24 H 0.96999 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47528 * 304.99966 * 11 9 7 26 26 H 1.09005 * 109.47621 * 64.99736 * 11 9 7 27 27 H 1.08998 * 109.46617 * 60.00518 * 14 13 9 28 28 H 1.08997 * 109.47127 * 300.00708 * 14 13 9 29 29 H 1.09005 * 109.47228 * 305.00333 * 15 14 13 30 30 H 1.09001 * 109.46804 * 185.00874 * 15 14 13 31 31 H 1.08990 * 109.52021 * 297.50387 * 19 17 16 32 32 H 1.08999 * 109.52366 * 57.63314 * 19 17 16 33 33 H 1.09000 * 109.54595 * 62.88180 * 20 19 17 34 34 H 1.08993 * 109.54622 * 183.15317 * 20 19 17 35 35 H 1.09004 * 109.52091 * 176.88375 * 21 20 19 36 36 H 1.08992 * 109.52309 * 297.01273 * 21 20 19 37 37 H 1.08998 * 109.48639 * 62.37353 * 22 21 20 38 38 H 1.09000 * 109.48485 * 182.39627 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2489 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1796 -3.5853 0.0005 14 6 1.6979 -4.7618 0.6534 15 6 2.7688 -5.8528 0.5935 16 8 3.9103 -5.4420 1.3487 17 6 4.9752 -6.3947 1.3572 18 1 5.2526 -6.6391 0.3318 19 6 6.1844 -5.8023 2.0859 20 6 7.2999 -6.8505 2.1434 21 6 6.7663 -8.1106 2.8317 22 6 5.5348 -8.6139 2.0742 23 8 4.5486 -7.5805 2.0311 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2757 -1.7048 -1.2953 26 1 1.0038 -2.6124 -2.1365 27 1 0.7947 -5.1109 0.1530 28 1 1.4711 -4.5325 1.6945 29 1 3.0601 -6.0195 -0.4436 30 1 2.3698 -6.7769 1.0118 31 1 6.5384 -4.9227 1.5485 32 1 5.8967 -5.5193 3.0985 33 1 7.6217 -7.0964 1.1314 34 1 8.1430 -6.4551 2.7096 35 1 7.5367 -8.8818 2.8275 36 1 6.4918 -7.8755 3.8599 37 1 5.8195 -8.8873 1.0582 38 1 5.1256 -9.4860 2.5842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224531376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:18 Heat of formation + Delta-G solvation = -167.998430 kcal Electronic energy + Delta-G solvation = -20052.416241 eV Core-core repulsion = 16727.361429 eV Total energy + Delta-G solvation = -3325.054812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63762 -37.46910 -36.36432 -34.66784 -33.80455 -33.21030 -30.89696 -29.54040 -27.93889 -25.16851 -24.78795 -23.28660 -21.96285 -20.85997 -20.38635 -17.38012 -16.75049 -16.60544 -16.01956 -15.52981 -14.92376 -14.74761 -14.58876 -14.25617 -13.88169 -13.37715 -13.25864 -12.85725 -12.83843 -12.29541 -12.05665 -11.94665 -11.38382 -11.33024 -11.16925 -11.09698 -10.98863 -10.70652 -10.70047 -10.63812 -10.33494 -9.78092 -9.62320 -9.50053 -9.37468 -9.22044 -8.55201 -8.02719 -6.26260 -4.31629 3.23721 3.28797 3.32128 3.41504 3.50266 4.02120 4.24762 4.60209 4.65074 4.76243 4.85812 4.95091 4.99382 5.10509 5.21841 5.38690 5.51460 5.60186 5.66411 5.69809 5.75504 5.79181 5.93675 6.11497 6.14731 6.27921 6.39466 6.43145 6.57192 6.96596 7.10864 7.37292 7.45746 7.70820 8.02342 8.45196 8.87299 9.35830 10.81069 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.004321 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.079180 B = 6478.293054 C = 7795.906352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.213 3.787 10 H 0.031 0.969 11 C -0.030 4.030 12 Cl -0.254 7.254 13 O -0.381 6.381 14 C 0.051 3.949 15 C 0.069 3.931 16 O -0.350 6.350 17 C 0.254 3.746 18 H 0.050 0.950 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.160 4.160 22 C 0.072 3.928 23 O -0.408 6.408 24 H 0.269 0.731 25 H 0.128 0.872 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.800 -13.894 2.210 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.091 0.909 9 C 0.156 3.844 10 H 0.049 0.951 11 C -0.092 4.092 12 Cl -0.228 7.228 13 O -0.300 6.300 14 C -0.026 4.026 15 C -0.007 4.007 16 O -0.269 6.269 17 C 0.158 3.842 18 H 0.067 0.933 19 C -0.179 4.179 20 C -0.157 4.157 21 C -0.197 4.197 22 C -0.005 4.005 23 O -0.329 6.329 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.568 -13.671 2.296 16.844 hybrid contribution 0.269 0.580 -0.179 0.664 sum 9.837 -13.091 2.117 16.512 Atomic orbital electron populations 1.69800 1.05959 1.27710 1.49719 1.24998 0.95114 0.99712 0.94428 0.86314 0.79326 0.81454 0.79016 1.19921 1.21055 1.19853 1.21065 0.94213 0.88422 1.51196 0.90901 1.19979 0.87445 0.84802 0.92159 0.95093 1.25940 0.95114 0.85324 1.02841 1.98593 1.76104 1.49184 1.98959 1.87895 1.43213 1.21571 1.77348 1.22767 0.95197 0.87194 0.97423 1.22619 0.86334 0.96988 0.94749 1.88193 1.26520 1.38888 1.73263 1.22939 0.87073 0.80451 0.93773 0.93272 1.22000 0.93891 0.99155 1.02851 1.21588 0.97893 0.95135 1.01107 1.22244 0.98277 0.98272 1.00936 1.22457 0.88645 0.89920 0.99451 1.87822 1.40724 1.25609 1.78775 0.92106 0.85451 0.91039 0.90587 0.93746 0.93020 0.91893 0.89781 0.90095 0.91679 0.90842 0.90779 0.90775 0.93266 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 11.29 55.43 0.63 -23.75 16 2 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 3 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.51 -14.08 8.89 -34.44 -0.31 -14.38 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.21 5.49 2.38 -27.89 -0.07 5.42 16 10 H 0.03 0.86 7.79 -51.93 -0.40 0.46 16 11 C -0.03 -0.71 6.17 37.15 0.23 -0.48 16 12 Cl -0.25 -5.30 26.09 -51.86 -1.35 -6.66 16 13 O -0.38 -9.26 9.92 -40.08 -0.40 -9.66 16 14 C 0.05 1.05 5.92 37.16 0.22 1.27 16 15 C 0.07 1.22 6.18 37.16 0.23 1.45 16 16 O -0.35 -6.54 10.23 -62.39 -0.64 -7.18 16 17 C 0.25 3.71 3.20 37.21 0.12 3.83 16 18 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.14 -1.75 5.79 -26.59 -0.15 -1.90 16 20 C -0.12 -1.08 6.03 -26.55 -0.16 -1.24 16 21 C -0.16 -1.34 6.14 -26.59 -0.16 -1.50 16 22 C 0.07 0.69 6.84 37.20 0.25 0.95 16 23 O -0.41 -5.73 10.03 -59.04 -0.59 -6.32 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.13 3.25 5.95 -51.92 -0.31 2.94 16 26 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.08 1.50 5.09 -51.93 -0.26 1.24 16 28 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -29.11 321.59 -8.42 -37.53 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.99 Total: 0.53 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.63 Total: -23.75 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.63 Total: -23.16 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -5.30 SS G_CDS: -1.35 Total: -6.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.11 -8.42 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224531376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.473 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds