Wall clock time and date at job start Tue Mar 31 2020 00:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47116 * 239.99703 * 3 2 1 5 5 H 1.48504 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47016 * 119.99544 * 3 2 1 7 7 C 1.37881 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99632 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47013 * 299.99630 * 9 7 2 11 11 C 1.52992 * 109.47273 * 59.99740 * 9 7 2 12 12 Cl 1.80305 * 109.47426 * 185.00007 * 11 9 7 13 13 O 1.42896 * 109.47104 * 179.97438 * 9 7 2 14 14 C 1.42906 * 114.00065 * 149.99569 * 13 9 7 15 15 C 1.52997 * 109.46950 * 180.02562 * 14 13 9 16 16 O 1.42895 * 109.47456 * 65.00555 * 15 14 13 17 17 C 1.42897 * 114.00383 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.48170 * 54.99805 * 17 16 15 19 19 C 1.53098 * 109.48005 * 175.02232 * 17 16 15 20 20 C 1.53178 * 109.15976 * 177.60179 * 19 17 16 21 21 C 1.53179 * 109.03547 * 303.01729 * 20 19 17 22 22 C 1.53088 * 109.16372 * 56.98571 * 21 20 19 23 23 O 1.42903 * 109.48597 * 294.96962 * 17 16 15 24 24 H 0.96999 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47528 * 304.99966 * 11 9 7 26 26 H 1.09005 * 109.47621 * 64.99736 * 11 9 7 27 27 H 1.08998 * 109.46617 * 60.00518 * 14 13 9 28 28 H 1.08997 * 109.47127 * 300.00708 * 14 13 9 29 29 H 1.09005 * 109.47228 * 305.00333 * 15 14 13 30 30 H 1.09001 * 109.46804 * 185.00874 * 15 14 13 31 31 H 1.08990 * 109.52021 * 297.50387 * 19 17 16 32 32 H 1.08999 * 109.52366 * 57.63314 * 19 17 16 33 33 H 1.09000 * 109.54595 * 62.88180 * 20 19 17 34 34 H 1.08993 * 109.54622 * 183.15317 * 20 19 17 35 35 H 1.09004 * 109.52091 * 176.88375 * 21 20 19 36 36 H 1.08992 * 109.52309 * 297.01273 * 21 20 19 37 37 H 1.08998 * 109.48639 * 62.37353 * 22 21 20 38 38 H 1.09000 * 109.48485 * 182.39627 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2489 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1796 -3.5853 0.0005 14 6 1.6979 -4.7618 0.6534 15 6 2.7688 -5.8528 0.5935 16 8 3.9103 -5.4420 1.3487 17 6 4.9752 -6.3947 1.3572 18 1 5.2526 -6.6391 0.3318 19 6 6.1844 -5.8023 2.0859 20 6 7.2999 -6.8505 2.1434 21 6 6.7663 -8.1106 2.8317 22 6 5.5348 -8.6139 2.0742 23 8 4.5486 -7.5805 2.0311 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2757 -1.7048 -1.2953 26 1 1.0038 -2.6124 -2.1365 27 1 0.7947 -5.1109 0.1530 28 1 1.4711 -4.5325 1.6945 29 1 3.0601 -6.0195 -0.4436 30 1 2.3698 -6.7769 1.0118 31 1 6.5384 -4.9227 1.5485 32 1 5.8967 -5.5193 3.0985 33 1 7.6217 -7.0964 1.1314 34 1 8.1430 -6.4551 2.7096 35 1 7.5367 -8.8818 2.8275 36 1 6.4918 -7.8755 3.8599 37 1 5.8195 -8.8873 1.0582 38 1 5.1256 -9.4860 2.5842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224531376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:17 Heat of formation + Delta-G solvation = -185.157584 kcal Electronic energy + Delta-G solvation = -20053.160318 eV Core-core repulsion = 16727.361429 eV Total energy + Delta-G solvation = -3325.798889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65808 -39.14971 -37.80142 -36.47867 -35.21042 -34.66972 -32.19614 -31.04681 -29.57326 -27.20975 -25.68758 -24.22003 -23.51055 -22.82443 -21.23631 -18.70122 -18.56358 -17.97164 -17.43590 -16.92688 -16.46569 -16.23522 -15.85467 -15.44005 -15.19899 -14.86748 -14.62730 -14.21003 -13.90495 -13.72970 -13.66751 -13.63106 -12.94854 -12.91358 -12.61017 -12.50387 -12.24527 -12.19980 -12.16106 -11.90246 -11.52824 -11.51064 -11.27669 -11.19805 -10.81879 -10.57728 -10.47361 -9.88897 -8.30615 -6.45224 1.42158 1.44063 1.53945 1.62480 2.34682 2.35091 2.96008 2.99599 3.17544 3.78518 3.85393 3.98240 4.00752 4.09699 4.19405 4.23623 4.41094 4.45234 4.48522 4.61136 4.66017 4.73887 4.75603 4.80129 4.85830 4.97951 5.02505 5.08915 5.11032 5.33958 5.36746 5.59950 5.97860 6.06753 6.29895 6.48281 6.82129 7.27454 8.76021 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.004321 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.079180 B = 6478.293054 C = 7795.906352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.218 3.782 10 H 0.003 0.997 11 C -0.020 4.020 12 Cl -0.227 7.227 13 O -0.395 6.395 14 C 0.049 3.951 15 C 0.077 3.923 16 O -0.385 6.385 17 C 0.249 3.751 18 H 0.061 0.939 19 C -0.142 4.142 20 C -0.115 4.115 21 C -0.156 4.156 22 C 0.061 3.939 23 O -0.431 6.431 24 H 0.274 0.726 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 -14.758 1.907 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.160 3.840 10 H 0.021 0.979 11 C -0.083 4.083 12 Cl -0.201 7.201 13 O -0.315 6.315 14 C -0.028 4.028 15 C 0.001 3.999 16 O -0.304 6.304 17 C 0.154 3.846 18 H 0.078 0.922 19 C -0.180 4.180 20 C -0.152 4.152 21 C -0.193 4.193 22 C -0.015 4.015 23 O -0.353 6.353 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.812 -14.567 1.995 18.250 hybrid contribution -0.144 0.716 -0.040 0.731 sum 10.667 -13.851 1.955 17.592 Atomic orbital electron populations 1.69890 1.07076 1.28756 1.49378 1.25755 0.95938 1.02667 0.93435 0.85342 0.78250 0.77420 0.79115 1.19124 1.19983 1.19765 1.21271 0.93903 0.89971 1.52884 0.92128 1.19769 0.87371 0.85044 0.91773 0.97913 1.25508 0.94873 0.86004 1.01931 1.98587 1.75256 1.47370 1.98937 1.87863 1.43456 1.22347 1.77824 1.22922 0.96848 0.86662 0.96375 1.22527 0.85805 0.96152 0.95433 1.88138 1.27549 1.41202 1.73559 1.23140 0.86221 0.80497 0.94783 0.92209 1.22050 0.94312 1.00150 1.01460 1.21608 0.96877 0.94408 1.02321 1.22234 0.98423 0.98622 1.00033 1.22805 0.88577 0.89242 1.00841 1.87780 1.42612 1.26068 1.78825 0.91695 0.87088 0.90607 0.89898 0.95028 0.92156 0.89981 0.90434 0.91661 0.90401 0.89363 0.87897 0.91626 0.91833 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.07 11.29 21.45 0.24 -49.83 16 2 C 0.02 1.20 5.29 84.66 0.45 1.65 16 3 Si 0.98 42.39 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -30.52 8.89 25.60 0.23 -30.29 16 8 H 0.06 3.47 7.81 -2.92 -0.02 3.45 16 9 C 0.22 11.49 2.38 29.85 0.07 11.56 16 10 H 0.00 0.18 7.79 -2.39 -0.02 0.16 16 11 C -0.02 -0.97 6.17 71.98 0.44 -0.53 16 12 Cl -0.23 -9.37 26.09 -2.72 -0.07 -9.44 16 13 O -0.39 -19.62 9.92 -144.35 -1.43 -21.05 16 14 C 0.05 2.02 5.92 71.98 0.43 2.45 16 15 C 0.08 2.70 6.18 71.98 0.45 3.14 16 16 O -0.38 -14.55 10.23 -123.01 -1.26 -15.80 16 17 C 0.25 7.15 3.20 72.01 0.23 7.38 16 18 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 19 C -0.14 -3.46 5.79 30.69 0.18 -3.28 16 20 C -0.11 -1.83 6.03 30.71 0.19 -1.65 16 21 C -0.16 -2.21 6.14 30.68 0.19 -2.02 16 22 C 0.06 1.04 6.84 72.01 0.49 1.53 16 23 O -0.43 -11.66 10.03 -126.21 -1.27 -12.93 16 24 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.11 5.73 5.95 -2.38 -0.01 5.72 16 26 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 27 H 0.08 3.27 5.09 -2.39 -0.01 3.26 16 28 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 29 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.08 2.54 7.75 -2.39 -0.02 2.52 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -62.64 321.59 2.61 -60.03 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.03 Total: 14.65 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 3.34 Total: -10.06 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.24 Total: -49.83 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -3.96 Total: -49.78 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 17 Polarization: -9.37 SS G_CDS: -0.07 Total: -9.44 kcal Total: -62.64 2.61 -60.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224531376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.125 kcal (2) G-P(sol) polarization free energy of solvation -62.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds