Wall clock time and date at job start Tue Mar 31 2020 00:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00637 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 11 11 C 1.53002 * 109.47292 * 59.99693 * 9 7 2 12 12 Cl 1.80300 * 109.47084 * 185.00015 * 11 9 7 13 13 O 1.42905 * 109.47264 * 179.97438 * 9 7 2 14 14 C 1.42900 * 113.99924 * 149.99831 * 13 9 7 15 15 C 1.53000 * 109.46558 * 180.02562 * 14 13 9 16 16 C 1.53006 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47338 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46995 * 180.02562 * 17 16 15 19 19 O 1.43755 * 109.62984 * 294.36465 * 18 17 16 20 20 C 1.44791 * 104.81375 * 215.80945 * 19 18 17 21 21 C 1.54912 * 101.71978 * 36.10514 * 20 19 18 22 22 O 1.43364 * 109.62801 * 175.00327 * 18 17 16 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47011 * 304.99961 * 11 9 7 25 25 H 1.09005 * 109.46847 * 65.00088 * 11 9 7 26 26 H 1.08998 * 109.46882 * 299.99937 * 14 13 9 27 27 H 1.08995 * 109.47077 * 60.00255 * 14 13 9 28 28 H 1.08998 * 109.47270 * 299.99451 * 15 14 13 29 29 H 1.08995 * 109.47421 * 60.00218 * 15 14 13 30 30 H 1.09003 * 109.47021 * 299.99964 * 16 15 14 31 31 H 1.09008 * 109.47214 * 59.99930 * 16 15 14 32 32 H 1.08994 * 109.47508 * 300.00430 * 17 16 15 33 33 H 1.09008 * 109.46698 * 60.00015 * 17 16 15 34 34 H 1.08990 * 109.62843 * 54.61042 * 18 17 16 35 35 H 1.09002 * 110.97666 * 277.99935 * 20 19 18 36 36 H 1.08997 * 111.00691 * 154.23028 * 20 19 18 37 37 H 1.08998 * 110.69284 * 206.03859 * 21 20 19 38 38 H 1.09002 * 110.84347 * 82.90695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 17 -0.6387 -4.0719 -1.1768 13 8 2.1797 -3.5853 0.0005 14 6 1.6980 -4.7618 0.6533 15 6 2.7689 -5.8528 0.5934 16 6 2.2531 -7.1127 1.2917 17 6 3.3237 -8.2040 1.2313 18 6 2.8075 -9.4640 1.9291 19 8 2.6315 -9.2017 3.3315 20 6 3.0001 -10.4381 3.9885 21 6 4.1647 -10.9340 3.0955 22 8 3.7592 -10.5248 1.7736 23 1 -0.4849 0.8400 -0.0004 24 1 -0.2756 -1.7048 -1.2953 25 1 1.0039 -2.6124 -2.1365 26 1 1.4712 -4.5325 1.6945 27 1 0.7947 -5.1108 0.1530 28 1 2.9961 -6.0822 -0.4477 29 1 3.6719 -5.5035 1.0939 30 1 2.0255 -6.8837 2.3329 31 1 1.3501 -7.4619 0.7908 32 1 3.5509 -8.4329 0.1902 33 1 4.2269 -7.8550 1.7320 34 1 1.8542 -9.7603 1.4917 35 1 2.1720 -11.1469 3.9791 36 1 3.3409 -10.2528 5.0071 37 1 4.2581 -12.0185 3.1514 38 1 5.1014 -10.4531 3.3773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224811975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:58 Heat of formation + Delta-G solvation = -170.300021 kcal Electronic energy + Delta-G solvation = -19466.634934 eV Core-core repulsion = 16141.480318 eV Total energy + Delta-G solvation = -3325.154616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56100 -37.30424 -35.32697 -35.13078 -34.55532 -33.16318 -31.06957 -29.27992 -28.09061 -25.20304 -24.50676 -23.49328 -21.66223 -20.95989 -20.66115 -17.49767 -16.99669 -16.62170 -16.25017 -15.73151 -15.33378 -14.88719 -14.57031 -13.96490 -13.85238 -13.79030 -13.29531 -12.98839 -12.75613 -12.36560 -12.06981 -12.00207 -11.73675 -11.54882 -11.24067 -11.01886 -10.95691 -10.75148 -10.61947 -10.52871 -10.36531 -10.26794 -9.85673 -9.64009 -9.35472 -9.23960 -8.56584 -7.98898 -6.28427 -4.34514 3.16087 3.21945 3.27137 3.30274 3.51860 3.74659 4.22121 4.25327 4.54672 4.67123 4.70504 4.93485 5.02456 5.05825 5.12120 5.21422 5.27933 5.48013 5.52349 5.70084 5.79480 5.95398 6.08836 6.17173 6.26300 6.35858 6.45567 6.50374 6.65555 6.74313 6.81199 6.98685 7.36634 7.67946 8.00461 8.45361 8.85072 9.33370 10.78729 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.003157 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.604649 B = 8865.854869 C = 9476.336289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.214 3.786 10 H 0.030 0.970 11 C -0.030 4.030 12 Cl -0.252 7.252 13 O -0.390 6.390 14 C 0.049 3.951 15 C -0.114 4.114 16 C -0.112 4.112 17 C -0.129 4.129 18 C 0.231 3.769 19 O -0.373 6.373 20 C 0.015 3.985 21 C 0.021 3.979 22 O -0.387 6.387 23 H 0.269 0.731 24 H 0.127 0.873 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -17.982 5.098 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.158 3.842 10 H 0.048 0.952 11 C -0.092 4.092 12 Cl -0.227 7.227 13 O -0.309 6.309 14 C -0.028 4.028 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.167 4.167 18 C 0.136 3.864 19 O -0.293 6.293 20 C -0.062 4.062 21 C -0.056 4.056 22 O -0.308 6.308 23 H 0.079 0.921 24 H 0.145 0.855 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.332 -17.811 4.910 18.977 hybrid contribution 0.029 0.689 0.187 0.714 sum 4.361 -17.123 5.098 18.390 Atomic orbital electron populations 1.69809 1.05961 1.27740 1.49548 1.25008 0.95132 0.99745 0.94384 0.86309 0.79325 0.81433 0.79017 1.19891 1.21021 1.19863 1.21077 0.94175 0.88540 1.51458 0.90965 1.19956 0.87425 0.84678 0.92191 0.95188 1.25891 0.95151 0.85384 1.02788 1.98595 1.76052 1.49037 1.98981 1.87820 1.43498 1.21866 1.77761 1.22684 0.97048 0.86887 0.96201 1.21455 0.99089 0.93656 1.00926 1.21384 0.97672 0.94198 1.01674 1.22002 1.00026 0.93490 1.01144 1.24222 0.91748 0.87746 0.82643 1.89300 1.88392 1.33465 1.18193 1.24374 0.96552 0.86640 0.98614 1.24173 0.98114 1.01311 0.81994 1.88895 1.61653 1.53226 1.27054 0.92075 0.85537 0.91085 0.94909 0.92036 0.91665 0.91759 0.91174 0.91815 0.89838 0.90782 0.89746 0.90684 0.87385 0.88395 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 11.29 55.43 0.63 -23.67 16 2 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.51 -14.08 8.89 -34.44 -0.31 -14.39 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.21 5.50 2.38 -27.88 -0.07 5.44 16 10 H 0.03 0.83 7.79 -51.93 -0.40 0.43 16 11 C -0.03 -0.71 6.17 37.16 0.23 -0.48 16 12 Cl -0.25 -5.33 26.09 -51.86 -1.35 -6.68 16 13 O -0.39 -9.35 9.95 -35.23 -0.35 -9.70 16 14 C 0.05 0.97 5.54 37.16 0.21 1.18 16 15 C -0.11 -1.83 5.58 -26.73 -0.15 -1.98 16 16 C -0.11 -1.50 5.12 -26.73 -0.14 -1.63 16 17 C -0.13 -1.53 5.30 -26.73 -0.14 -1.67 16 18 C 0.23 2.61 4.01 37.16 0.15 2.76 16 19 O -0.37 -4.33 10.93 -59.04 -0.64 -4.97 16 20 C 0.01 0.11 7.95 38.17 0.30 0.42 16 21 C 0.02 0.16 8.07 38.17 0.31 0.46 16 22 O -0.39 -4.31 11.21 -59.04 -0.66 -4.98 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.13 3.24 5.95 -51.93 -0.31 2.93 16 25 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 26 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.06 1.22 5.09 -51.93 -0.26 0.96 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -29.01 325.10 -8.21 -37.22 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.00 Total: 0.68 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.30 Total: -8.42 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.63 Total: -23.67 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.66 Total: -19.65 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -5.33 SS G_CDS: -1.35 Total: -6.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.01 -8.21 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224811975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.083 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds