Wall clock time and date at job start Tue Mar 31 2020 00:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00637 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 11 11 C 1.53002 * 109.47292 * 59.99693 * 9 7 2 12 12 Cl 1.80300 * 109.47084 * 185.00015 * 11 9 7 13 13 O 1.42905 * 109.47264 * 179.97438 * 9 7 2 14 14 C 1.42900 * 113.99924 * 149.99831 * 13 9 7 15 15 C 1.53000 * 109.46558 * 180.02562 * 14 13 9 16 16 C 1.53006 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47338 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46995 * 180.02562 * 17 16 15 19 19 O 1.43755 * 109.62984 * 294.36465 * 18 17 16 20 20 C 1.44791 * 104.81375 * 215.80945 * 19 18 17 21 21 C 1.54912 * 101.71978 * 36.10514 * 20 19 18 22 22 O 1.43364 * 109.62801 * 175.00327 * 18 17 16 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47011 * 304.99961 * 11 9 7 25 25 H 1.09005 * 109.46847 * 65.00088 * 11 9 7 26 26 H 1.08998 * 109.46882 * 299.99937 * 14 13 9 27 27 H 1.08995 * 109.47077 * 60.00255 * 14 13 9 28 28 H 1.08998 * 109.47270 * 299.99451 * 15 14 13 29 29 H 1.08995 * 109.47421 * 60.00218 * 15 14 13 30 30 H 1.09003 * 109.47021 * 299.99964 * 16 15 14 31 31 H 1.09008 * 109.47214 * 59.99930 * 16 15 14 32 32 H 1.08994 * 109.47508 * 300.00430 * 17 16 15 33 33 H 1.09008 * 109.46698 * 60.00015 * 17 16 15 34 34 H 1.08990 * 109.62843 * 54.61042 * 18 17 16 35 35 H 1.09002 * 110.97666 * 277.99935 * 20 19 18 36 36 H 1.08997 * 111.00691 * 154.23028 * 20 19 18 37 37 H 1.08998 * 110.69284 * 206.03859 * 21 20 19 38 38 H 1.09002 * 110.84347 * 82.90695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 17 -0.6387 -4.0719 -1.1768 13 8 2.1797 -3.5853 0.0005 14 6 1.6980 -4.7618 0.6533 15 6 2.7689 -5.8528 0.5934 16 6 2.2531 -7.1127 1.2917 17 6 3.3237 -8.2040 1.2313 18 6 2.8075 -9.4640 1.9291 19 8 2.6315 -9.2017 3.3315 20 6 3.0001 -10.4381 3.9885 21 6 4.1647 -10.9340 3.0955 22 8 3.7592 -10.5248 1.7736 23 1 -0.4849 0.8400 -0.0004 24 1 -0.2756 -1.7048 -1.2953 25 1 1.0039 -2.6124 -2.1365 26 1 1.4712 -4.5325 1.6945 27 1 0.7947 -5.1108 0.1530 28 1 2.9961 -6.0822 -0.4477 29 1 3.6719 -5.5035 1.0939 30 1 2.0255 -6.8837 2.3329 31 1 1.3501 -7.4619 0.7908 32 1 3.5509 -8.4329 0.1902 33 1 4.2269 -7.8550 1.7320 34 1 1.8542 -9.7603 1.4917 35 1 2.1720 -11.1469 3.9791 36 1 3.3409 -10.2528 5.0071 37 1 4.2581 -12.0185 3.1514 38 1 5.1014 -10.4531 3.3773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224811975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:58 Heat of formation + Delta-G solvation = -187.497611 kcal Electronic energy + Delta-G solvation = -19467.380678 eV Core-core repulsion = 16141.480318 eV Total energy + Delta-G solvation = -3325.900360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30846 -39.10704 -36.70239 -36.21602 -35.97360 -35.07013 -32.23007 -30.83268 -29.28960 -27.22650 -25.69384 -24.15095 -22.91875 -22.66244 -21.98173 -18.64687 -18.25020 -17.76656 -17.56663 -17.14476 -16.71098 -16.42879 -15.75760 -15.45293 -15.23444 -14.69865 -14.56334 -14.19100 -13.96314 -13.76930 -13.70286 -13.40591 -13.09473 -12.83624 -12.70445 -12.61334 -12.49600 -12.20492 -12.17274 -12.10425 -11.55528 -11.45645 -11.24344 -11.18419 -11.18144 -10.58901 -10.57515 -9.82893 -8.31502 -6.46802 1.41948 1.44198 1.53878 1.63378 2.34134 2.48089 2.91297 3.00494 3.23697 3.69153 3.90840 3.91518 4.06436 4.09108 4.19049 4.27874 4.42148 4.46516 4.52533 4.57067 4.62179 4.66790 4.77335 4.82971 4.90190 4.92150 4.95918 5.02102 5.17029 5.33293 5.37737 5.41065 5.59613 5.97153 6.07335 6.48940 6.83238 7.26501 8.75007 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.003157 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.604649 B = 8865.854869 C = 9476.336289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.219 3.781 10 H 0.003 0.997 11 C -0.021 4.021 12 Cl -0.227 7.227 13 O -0.404 6.404 14 C 0.044 3.956 15 C -0.105 4.105 16 C -0.101 4.101 17 C -0.124 4.124 18 C 0.232 3.768 19 O -0.398 6.398 20 C 0.010 3.990 21 C 0.015 3.985 22 O -0.405 6.405 23 H 0.274 0.726 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -18.768 5.267 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.162 3.838 10 H 0.021 0.979 11 C -0.084 4.084 12 Cl -0.201 7.201 13 O -0.324 6.324 14 C -0.033 4.033 15 C -0.143 4.143 16 C -0.139 4.139 17 C -0.162 4.162 18 C 0.137 3.863 19 O -0.319 6.319 20 C -0.066 4.066 21 C -0.061 4.061 22 O -0.327 6.327 23 H 0.083 0.917 24 H 0.128 0.872 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.808 -18.627 5.086 19.898 hybrid contribution -0.152 0.820 0.193 0.856 sum 4.656 -17.807 5.280 19.147 Atomic orbital electron populations 1.69902 1.07123 1.28777 1.49281 1.25787 0.95957 1.02775 0.93421 0.85321 0.78218 0.77316 0.79157 1.19202 1.20080 1.19557 1.21313 0.94009 0.90001 1.53012 0.91894 1.19742 0.87358 0.85016 0.91694 0.97935 1.25494 0.94927 0.86011 1.01999 1.98589 1.75262 1.47300 1.98964 1.87791 1.43653 1.22663 1.78318 1.22896 0.98553 0.86414 0.95395 1.21415 0.97787 0.93470 1.01591 1.21268 0.98401 0.93362 1.00861 1.21925 0.99149 0.93424 1.01672 1.24151 0.92026 0.87400 0.82731 1.89271 1.88643 1.35554 1.18472 1.24644 0.97060 0.85599 0.99267 1.24425 0.98157 1.02949 0.80540 1.88870 1.61742 1.53040 1.29009 0.91693 0.87189 0.90777 0.95606 0.91936 0.91235 0.92017 0.91830 0.91172 0.89264 0.91259 0.89196 0.89342 0.85461 0.85827 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.85 11.29 21.45 0.24 -49.61 16 2 C 0.02 1.12 5.29 84.65 0.45 1.57 16 3 Si 0.98 41.96 29.54 68.60 2.03 43.98 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -30.31 8.89 25.60 0.23 -30.08 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.22 11.46 2.38 29.85 0.07 11.53 16 10 H 0.00 0.17 7.79 -2.38 -0.02 0.15 16 11 C -0.02 -1.03 6.17 71.98 0.44 -0.59 16 12 Cl -0.23 -9.46 26.09 -2.72 -0.07 -9.53 16 13 O -0.40 -19.64 9.95 -148.98 -1.48 -21.13 16 14 C 0.04 1.76 5.54 71.98 0.40 2.16 16 15 C -0.11 -3.34 5.58 30.60 0.17 -3.17 16 16 C -0.10 -2.63 5.12 30.60 0.16 -2.48 16 17 C -0.12 -2.82 5.30 30.59 0.16 -2.66 16 18 C 0.23 4.95 4.01 71.98 0.29 5.24 16 19 O -0.40 -8.77 10.93 -126.22 -1.38 -10.15 16 20 C 0.01 0.13 7.95 72.64 0.58 0.71 16 21 C 0.01 0.20 8.07 72.64 0.59 0.78 16 22 O -0.40 -8.42 11.21 -126.22 -1.42 -9.84 16 23 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.11 5.70 5.95 -2.39 -0.01 5.69 16 25 H 0.07 3.47 8.14 -2.38 -0.02 3.45 16 26 H 0.03 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.06 2.47 5.09 -2.39 -0.01 2.45 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.74 7.85 -2.39 -0.02 1.73 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -61.35 325.10 2.48 -58.87 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.03 Total: 14.38 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 3.53 Total: -16.98 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.24 Total: -49.61 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -4.28 Total: -41.11 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -9.46 SS G_CDS: -0.07 Total: -9.53 kcal Total: -61.35 2.48 -58.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224811975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.627 kcal (2) G-P(sol) polarization free energy of solvation -61.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds