Wall clock time and date at job start Mon Mar 30 2020 23:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99660 * 2 1 4 4 H 1.48504 * 109.47442 * 270.00159 * 3 2 1 5 5 H 1.48499 * 109.47312 * 30.00475 * 3 2 1 6 6 H 1.48503 * 109.46911 * 150.00295 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99695 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.65226 * 0.02562 * 9 7 2 11 11 C 1.54323 * 107.27350 * 178.89702 * 10 9 7 12 12 C 1.55164 * 102.94049 * 337.80577 * 11 10 9 13 13 H 1.08998 * 111.00302 * 277.42818 * 12 11 10 14 14 O 1.42899 * 111.00394 * 153.61621 * 12 11 10 15 15 C 1.35896 * 116.99977 * 156.26600 * 14 12 11 16 16 C 1.38756 * 120.05622 * 5.24960 * 15 14 12 17 17 C 1.38124 * 119.94071 * 179.78920 * 16 15 14 18 18 C 1.38287 * 120.05530 * 0.48637 * 17 16 15 19 19 C 1.38241 * 120.11227 * 359.74193 * 18 17 16 20 20 N 1.48009 * 119.96806 * 180.02562 * 19 18 17 21 21 O 1.21797 * 119.99720 * 180.02562 * 20 19 18 22 22 O 1.21797 * 119.99988 * 0.02562 * 20 19 18 23 23 C 1.38165 * 120.05688 * 0.02562 * 19 18 17 24 24 C 1.47429 * 125.64446 * 179.97438 * 9 7 2 25 25 H 0.97001 * 120.00147 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.87949 * 59.47599 * 10 9 7 27 27 H 1.09007 * 110.01122 * 298.38818 * 10 9 7 28 28 H 1.08998 * 110.72031 * 219.44665 * 11 10 9 29 29 H 1.08995 * 110.72140 * 96.16883 * 11 10 9 30 30 H 1.07992 * 120.02705 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.96945 * 180.23044 * 17 16 15 32 32 H 1.08008 * 119.94168 * 179.76936 * 18 17 16 33 33 H 1.08000 * 120.02630 * 179.97438 * 23 19 18 34 34 H 1.09004 * 110.36789 * 85.33513 * 24 9 7 35 35 H 1.09007 * 110.36567 * 323.01105 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0289 12 6 0.8519 -4.6555 -0.6144 13 1 0.8567 -4.5945 -1.7027 14 8 1.0244 -6.0056 -0.1791 15 6 1.7937 -6.8113 -0.9574 16 6 2.4592 -6.2866 -2.0561 17 6 3.2440 -7.1068 -2.8430 18 6 3.3588 -8.4517 -2.5424 19 6 2.6930 -8.9778 -1.4511 20 7 2.8186 -10.4176 -1.1320 21 8 2.2318 -10.8817 -0.1708 22 8 3.5086 -11.1382 -1.8305 23 6 1.9105 -8.1606 -0.6580 24 6 1.9335 -3.7312 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5576 -2.0512 -0.8836 27 1 -0.5567 -2.0849 0.9006 28 1 -1.2985 -4.2508 -0.6791 29 1 -0.6315 -4.4191 0.9780 30 1 2.3666 -5.2372 -2.2936 31 1 3.7652 -6.6982 -3.6961 32 1 3.9700 -9.0921 -3.1612 33 1 1.3903 -8.5722 0.1943 34 1 2.1664 -4.0430 1.0166 35 1 2.8331 -3.7399 -0.6172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226763416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:23 Heat of formation + Delta-G solvation = 2.315779 kcal Electronic energy + Delta-G solvation = -20921.740186 eV Core-core repulsion = 17502.963259 eV Total energy + Delta-G solvation = -3418.776927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.31498 -41.56680 -39.46043 -37.86100 -37.70778 -34.36517 -33.01257 -31.81915 -30.91950 -29.21125 -27.66227 -26.54570 -24.04619 -23.74942 -22.18698 -21.87100 -20.51929 -19.81334 -19.04090 -18.67303 -18.46053 -17.43157 -17.02035 -16.75153 -16.48242 -15.75207 -15.57719 -15.07815 -14.55497 -14.24794 -14.09367 -13.88272 -13.43294 -13.21411 -12.94592 -12.87086 -12.73297 -12.62971 -12.33739 -12.28661 -12.17482 -12.06186 -11.94101 -11.67826 -11.55278 -10.74748 -10.67434 -9.64779 -8.98781 -7.89704 -5.27088 -1.30606 -0.02495 0.24305 0.25902 1.47180 1.48387 1.56986 1.87139 2.24222 2.47994 3.29996 3.39189 3.52221 3.53135 3.64048 3.72732 3.78093 3.86970 3.95084 4.03372 4.34212 4.53986 4.59394 4.67700 4.76908 4.87207 4.90291 4.94859 5.01798 5.06250 5.35556 5.41072 5.55843 5.68885 6.08696 6.17970 6.44766 7.04121 7.69203 8.31647 9.20484 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039071 B = 0.003424 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.470133 B = 8176.749262 C = 8585.292995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.086 0.914 9 N -0.623 5.623 10 C 0.185 3.815 11 C -0.125 4.125 12 C 0.081 3.919 13 H 0.105 0.895 14 O -0.304 6.304 15 C 0.128 3.872 16 C -0.154 4.154 17 C -0.060 4.060 18 C -0.088 4.088 19 C -0.021 4.021 20 N 0.031 4.969 21 O -0.193 6.193 22 O -0.153 6.153 23 C -0.106 4.106 24 C 0.116 3.884 25 H 0.249 0.751 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.190 0.810 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.023 0.977 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -14.466 -7.250 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.103 0.897 9 N -0.351 5.351 10 C 0.060 3.940 11 C -0.163 4.163 12 C 0.024 3.976 13 H 0.123 0.877 14 O -0.217 6.217 15 C 0.082 3.918 16 C -0.172 4.172 17 C -0.078 4.078 18 C -0.107 4.107 19 C -0.104 4.104 20 N 0.547 4.453 21 O -0.402 6.402 22 O -0.373 6.373 23 C -0.126 4.126 24 C -0.010 4.010 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.176 0.824 31 H 0.207 0.793 32 H 0.193 0.807 33 H 0.172 0.828 34 H 0.041 0.959 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.648 -13.612 -7.154 16.064 hybrid contribution 0.119 0.804 0.476 0.942 sum 4.767 -12.809 -6.678 15.211 Atomic orbital electron populations 1.70142 1.06275 1.25561 1.57765 1.25648 0.96614 1.01015 1.02149 0.85072 0.77590 0.78977 0.77625 1.20895 1.22276 1.19495 1.19439 0.91111 0.83285 1.43706 0.89654 1.44601 1.02432 1.00691 1.87345 1.20957 0.83830 0.90384 0.98857 1.22885 0.96093 0.95050 1.02250 1.23701 0.97008 0.77137 0.99720 0.87742 1.86132 1.64712 1.22525 1.48288 1.18781 0.92316 0.89470 0.91276 1.22154 0.97442 1.03082 0.94560 1.21420 0.95996 0.90636 0.99733 1.21325 0.97893 0.97174 0.94330 1.20819 1.07825 0.79471 1.02289 1.43809 0.98201 1.03993 0.99289 1.94559 1.47013 1.78561 1.20101 1.94495 1.36605 1.58056 1.48102 1.20031 1.00101 0.90896 1.01575 1.22054 0.95445 0.85174 0.98282 0.94180 0.95576 0.96842 0.88507 0.90521 0.82394 0.79330 0.80716 0.82783 0.95879 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.49 10.31 21.65 0.22 -54.27 16 2 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 3 Si 0.98 43.61 29.55 68.60 2.03 45.64 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.25 -13.08 10.28 84.03 0.86 -12.22 16 8 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -29.96 3.39 -691.96 -2.35 -32.30 16 10 C 0.18 8.50 5.37 86.73 0.47 8.96 16 11 C -0.12 -4.19 6.69 31.79 0.21 -3.97 16 12 C 0.08 2.44 2.81 31.99 0.09 2.53 16 13 H 0.10 2.76 6.22 -2.39 -0.01 2.74 16 14 O -0.30 -8.50 9.95 -92.38 -0.92 -9.42 16 15 C 0.13 3.00 6.68 22.51 0.15 3.15 16 16 C -0.15 -2.83 8.95 22.37 0.20 -2.63 16 17 C -0.06 -0.78 10.04 22.25 0.22 -0.56 16 18 C -0.09 -1.38 9.55 22.28 0.21 -1.16 16 19 C -0.02 -0.46 6.85 36.36 0.25 -0.21 16 20 N 0.03 0.79 4.45 -46.51 -0.21 0.58 16 21 O -0.19 -5.55 18.45 18.89 0.35 -5.21 16 22 O -0.15 -3.87 18.44 18.89 0.35 -3.52 16 23 C -0.11 -2.47 9.49 22.36 0.21 -2.25 16 24 C 0.12 4.32 6.87 86.85 0.60 4.92 16 25 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.03 1.32 7.38 -2.38 -0.02 1.30 16 27 H 0.01 0.70 7.51 -2.38 -0.02 0.69 16 28 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.16 2.81 5.67 -2.91 -0.02 2.80 16 31 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.18 1.96 7.61 -2.91 -0.02 1.93 16 33 H 0.15 3.62 7.61 -2.91 -0.02 3.60 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.99 7.82 -2.38 -0.02 1.98 16 Total: -1.00 -64.63 303.37 4.53 -60.10 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.12 Total: 4.66 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 3.94 Total: -6.27 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.33 Total: -85.99 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.22 Total: -18.14 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.63 4.53 -60.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226763416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.419 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds