Wall clock time and date at job start Mon Mar 30 2020 23:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48504 * 109.46807 * 239.99416 * 3 2 1 5 5 H 1.48495 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47332 * 119.99768 * 3 2 1 7 7 C 1.38809 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.47468 * 125.62605 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.81231 * 204.05614 * 10 9 7 12 12 C 1.55164 * 101.61352 * 323.04326 * 11 10 9 13 13 H 1.09000 * 110.72039 * 277.12198 * 12 11 10 14 14 O 1.42901 * 110.72020 * 154.02784 * 12 11 10 15 15 C 1.35897 * 116.99546 * 156.23267 * 14 12 11 16 16 C 1.38748 * 120.06173 * 5.52902 * 15 14 12 17 17 C 1.38118 * 119.94493 * 179.74657 * 16 15 14 18 18 C 1.38294 * 120.05764 * 0.52904 * 17 16 15 19 19 C 1.38244 * 120.10672 * 359.75184 * 18 17 16 20 20 C 1.38166 * 120.05650 * 359.96546 * 19 18 17 21 21 N 1.48005 * 120.02785 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99771 * 0.02745 * 21 20 19 23 23 O 1.21796 * 120.00493 * 180.02562 * 21 20 19 24 24 C 1.47018 * 125.64818 * 179.97438 * 9 7 2 25 25 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08994 * 110.35119 * 85.23441 * 10 9 7 27 27 H 1.09003 * 110.40702 * 322.89663 * 10 9 7 28 28 H 1.08994 * 111.00398 * 204.95365 * 11 10 9 29 29 H 1.08995 * 111.00512 * 81.13221 * 11 10 9 30 30 H 1.08006 * 120.02907 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.97572 * 180.27947 * 17 16 15 32 32 H 1.08000 * 119.94912 * 179.71698 * 18 17 16 33 33 H 1.07997 * 119.96970 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.88531 * 59.57567 * 24 9 7 35 35 H 1.08995 * 109.88478 * 298.40440 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1420 -2.5327 -0.0005 11 6 -0.4024 -3.9323 0.6104 12 6 0.7784 -4.7525 0.0269 13 1 0.5472 -5.0981 -0.9807 14 8 1.0966 -5.8559 0.8774 15 6 1.7266 -6.9148 0.3043 16 6 2.1350 -6.8471 -1.0200 17 6 2.7799 -7.9228 -1.5985 18 6 3.0088 -9.0709 -0.8622 19 6 2.5977 -9.1430 0.4557 20 6 1.9574 -8.0675 1.0407 21 7 1.5180 -8.1452 2.4519 22 8 1.7213 -9.1574 3.0981 23 8 0.9533 -7.1970 2.9670 24 6 1.9319 -3.7275 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5267 -2.4859 -1.0192 27 1 -0.6006 -1.7589 0.6151 28 1 -1.3593 -4.3327 0.2756 29 1 -0.3545 -3.8985 1.6987 30 1 1.9529 -5.9522 -1.5967 31 1 3.1020 -7.8689 -2.6279 32 1 3.5091 -9.9127 -1.3177 33 1 2.7773 -10.0408 1.0285 34 1 2.5576 -3.8512 0.8844 35 1 2.5289 -3.8642 -0.9010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227479687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:37 Heat of formation + Delta-G solvation = 20.826616 kcal Electronic energy + Delta-G solvation = -21518.372564 eV Core-core repulsion = 18100.398327 eV Total energy + Delta-G solvation = -3417.974237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.01608 -40.39602 -38.29698 -36.51057 -36.10446 -32.57436 -32.02571 -30.57005 -29.31258 -27.59622 -26.36549 -24.77381 -23.09847 -22.45540 -20.43511 -20.35835 -19.41201 -18.44574 -17.89916 -17.33377 -17.10570 -16.02882 -15.66002 -15.32999 -14.86033 -14.76441 -14.04504 -13.98702 -13.16268 -12.68217 -12.58596 -12.50956 -12.05302 -11.87771 -11.58257 -11.33011 -11.09514 -10.92196 -10.88101 -10.82130 -10.60111 -10.46416 -10.18812 -9.95704 -9.83045 -9.70241 -8.75913 -8.70931 -6.98755 -5.76133 -3.19333 -0.07796 0.83735 1.40673 1.56122 2.88736 3.12797 3.35787 3.40342 3.41595 4.18886 4.34215 4.41389 4.60073 4.65131 4.81076 4.99665 5.08862 5.21172 5.39626 5.40693 5.50369 5.60061 5.66133 5.86793 6.03289 6.16169 6.28006 6.31750 6.39577 6.46592 6.57919 7.20108 7.33803 7.50051 7.72051 7.87337 8.22594 9.09510 9.69685 10.31494 11.28155 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.004277 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.518579 B = 6544.725572 C = 6977.722471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.153 3.847 11 C -0.134 4.134 12 C 0.059 3.941 13 H 0.082 0.918 14 O -0.266 6.266 15 C 0.209 3.791 16 C -0.214 4.214 17 C -0.026 4.026 18 C -0.167 4.167 19 C -0.023 4.023 20 C -0.091 4.091 21 N 0.037 4.963 22 O -0.193 6.193 23 O -0.131 6.131 24 C 0.120 3.880 25 H 0.255 0.745 26 H 0.018 0.982 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.037 0.963 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -17.099 -4.312 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.028 3.972 11 C -0.173 4.173 12 C 0.004 3.996 13 H 0.100 0.900 14 O -0.176 6.176 15 C 0.158 3.842 16 C -0.233 4.233 17 C -0.045 4.045 18 C -0.186 4.186 19 C -0.042 4.042 20 C -0.176 4.176 21 N 0.554 4.446 22 O -0.399 6.399 23 O -0.353 6.353 24 C -0.006 4.006 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.055 0.945 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.528 -16.826 -4.759 17.838 hybrid contribution 0.474 0.796 0.027 0.927 sum 4.002 -16.029 -4.733 17.186 Atomic orbital electron populations 1.69736 1.04947 1.25231 1.57070 1.24800 0.95762 0.97816 1.01885 0.86104 0.78422 0.82701 0.77969 1.21150 1.21413 1.20988 1.19020 0.90540 0.82129 1.43962 0.90392 1.44350 1.01858 0.99242 1.87186 1.22040 0.84761 0.91795 0.98596 1.23254 0.94379 0.97313 1.02316 1.24016 0.98531 0.83889 0.93212 0.89984 1.86521 1.68919 1.24208 1.37913 1.18840 0.88117 0.86183 0.91009 1.21553 1.05484 1.02570 0.93721 1.21417 0.91466 0.91341 1.00237 1.21052 1.04587 0.99724 0.93221 1.20896 0.91589 0.96357 0.95340 1.20560 1.15845 0.97708 0.83494 1.43334 0.98617 1.00111 1.02519 1.94483 1.61447 1.21594 1.62396 1.94645 1.39783 1.28674 1.72211 1.21668 0.93448 0.86569 0.98924 0.93420 0.96428 0.86612 0.91272 0.90048 0.82690 0.83904 0.83778 0.82757 0.94508 0.95531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.24 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.96 3.40 -170.04 -0.58 -15.54 16 10 C 0.15 3.56 5.89 -2.51 -0.01 3.55 16 11 C -0.13 -2.52 6.81 -24.58 -0.17 -2.69 16 12 C 0.06 1.02 2.74 -24.89 -0.07 0.95 16 13 H 0.08 1.22 6.26 -51.93 -0.33 0.90 16 14 O -0.27 -4.59 7.89 -41.54 -0.33 -4.92 16 15 C 0.21 3.04 6.65 -39.22 -0.26 2.78 16 16 C -0.21 -2.44 8.90 -39.44 -0.35 -2.80 16 17 C -0.03 -0.22 10.04 -39.60 -0.40 -0.62 16 18 C -0.17 -1.31 10.04 -39.56 -0.40 -1.71 16 19 C -0.02 -0.24 9.55 -39.61 -0.38 -0.61 16 20 C -0.09 -1.29 6.87 -79.81 -0.55 -1.84 16 21 N 0.04 0.63 4.45 34.03 0.15 0.78 16 22 O -0.19 -3.16 18.45 -29.46 -0.54 -3.70 16 23 O -0.13 -2.48 17.24 -36.49 -0.63 -3.10 16 24 C 0.12 2.46 6.80 -3.06 -0.02 2.43 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.12 3.05 5.88 -51.93 -0.31 2.75 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.16 1.71 5.61 -52.48 -0.29 1.42 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 1.31 7.61 -52.49 -0.40 0.91 16 34 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.03 0.51 7.79 -51.93 -0.40 0.11 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -31.23 300.34 -8.53 -39.76 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -3.81 Total: -1.60 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.85 Total: -7.23 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.13 Total: -40.30 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.50 Total: -11.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.23 -8.53 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227479687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.582 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds