Wall clock time and date at job start Mon Mar 30 2020 23:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48504 * 109.46807 * 239.99416 * 3 2 1 5 5 H 1.48495 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47332 * 119.99768 * 3 2 1 7 7 C 1.38809 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.47468 * 125.62605 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.81231 * 204.05614 * 10 9 7 12 12 C 1.55164 * 101.61352 * 323.04326 * 11 10 9 13 13 H 1.09000 * 110.72039 * 277.12198 * 12 11 10 14 14 O 1.42901 * 110.72020 * 154.02784 * 12 11 10 15 15 C 1.35897 * 116.99546 * 156.23267 * 14 12 11 16 16 C 1.38748 * 120.06173 * 5.52902 * 15 14 12 17 17 C 1.38118 * 119.94493 * 179.74657 * 16 15 14 18 18 C 1.38294 * 120.05764 * 0.52904 * 17 16 15 19 19 C 1.38244 * 120.10672 * 359.75184 * 18 17 16 20 20 C 1.38166 * 120.05650 * 359.96546 * 19 18 17 21 21 N 1.48005 * 120.02785 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99771 * 0.02745 * 21 20 19 23 23 O 1.21796 * 120.00493 * 180.02562 * 21 20 19 24 24 C 1.47018 * 125.64818 * 179.97438 * 9 7 2 25 25 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08994 * 110.35119 * 85.23441 * 10 9 7 27 27 H 1.09003 * 110.40702 * 322.89663 * 10 9 7 28 28 H 1.08994 * 111.00398 * 204.95365 * 11 10 9 29 29 H 1.08995 * 111.00512 * 81.13221 * 11 10 9 30 30 H 1.08006 * 120.02907 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.97572 * 180.27947 * 17 16 15 32 32 H 1.08000 * 119.94912 * 179.71698 * 18 17 16 33 33 H 1.07997 * 119.96970 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.88531 * 59.57567 * 24 9 7 35 35 H 1.08995 * 109.88478 * 298.40440 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1420 -2.5327 -0.0005 11 6 -0.4024 -3.9323 0.6104 12 6 0.7784 -4.7525 0.0269 13 1 0.5472 -5.0981 -0.9807 14 8 1.0966 -5.8559 0.8774 15 6 1.7266 -6.9148 0.3043 16 6 2.1350 -6.8471 -1.0200 17 6 2.7799 -7.9228 -1.5985 18 6 3.0088 -9.0709 -0.8622 19 6 2.5977 -9.1430 0.4557 20 6 1.9574 -8.0675 1.0407 21 7 1.5180 -8.1452 2.4519 22 8 1.7213 -9.1574 3.0981 23 8 0.9533 -7.1970 2.9670 24 6 1.9319 -3.7275 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5267 -2.4859 -1.0192 27 1 -0.6006 -1.7589 0.6151 28 1 -1.3593 -4.3327 0.2756 29 1 -0.3545 -3.8985 1.6987 30 1 1.9529 -5.9522 -1.5967 31 1 3.1020 -7.8689 -2.6279 32 1 3.5091 -9.9127 -1.3177 33 1 2.7773 -10.0408 1.0285 34 1 2.5576 -3.8512 0.8844 35 1 2.5289 -3.8642 -0.9010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227479687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:37 Heat of formation + Delta-G solvation = 2.964703 kcal Electronic energy + Delta-G solvation = -21519.147115 eV Core-core repulsion = 18100.398327 eV Total energy + Delta-G solvation = -3418.748788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.19521 -41.52706 -39.46872 -37.96679 -37.42745 -34.39001 -33.03517 -31.67699 -30.94696 -29.22849 -27.46717 -26.60823 -24.21374 -23.45568 -22.21389 -21.73880 -20.54486 -19.66101 -19.13680 -18.86820 -18.54734 -17.16206 -16.86901 -16.71487 -16.23870 -15.79548 -15.53930 -15.40329 -14.52646 -14.34097 -13.77678 -13.66971 -13.40228 -13.18093 -12.98607 -12.75919 -12.66109 -12.61952 -12.30234 -12.20854 -12.09639 -12.06310 -11.89116 -11.74433 -11.47960 -10.78837 -10.66186 -9.67210 -8.98300 -7.82744 -5.28600 -1.14434 0.00787 0.34571 0.48086 1.46412 1.49625 1.55961 1.75617 2.31773 2.47091 3.28297 3.28667 3.40205 3.56291 3.70294 3.77186 3.83534 3.91513 3.97964 4.11724 4.43586 4.52151 4.59534 4.75273 4.80007 4.81399 4.91757 4.99086 5.14292 5.24689 5.39956 5.46728 5.52886 5.71255 6.03596 6.23966 6.57232 7.03908 7.69048 8.31166 9.19355 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.004277 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.518579 B = 6544.725572 C = 6977.722471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.983 3.017 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.079 3.921 13 H 0.113 0.887 14 O -0.291 6.291 15 C 0.177 3.823 16 C -0.221 4.221 17 C -0.006 4.006 18 C -0.142 4.142 19 C -0.024 4.024 20 C -0.112 4.112 21 N 0.039 4.961 22 O -0.172 6.172 23 O -0.209 6.209 24 C 0.120 3.880 25 H 0.250 0.750 26 H 0.008 0.992 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.158 0.842 31 H 0.187 0.813 32 H 0.192 0.808 33 H 0.174 0.826 34 H 0.018 0.982 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -19.673 -6.838 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.349 5.349 10 C 0.032 3.968 11 C -0.163 4.163 12 C 0.023 3.977 13 H 0.131 0.869 14 O -0.202 6.202 15 C 0.128 3.872 16 C -0.240 4.240 17 C -0.024 4.024 18 C -0.160 4.160 19 C -0.043 4.043 20 C -0.198 4.198 21 N 0.549 4.451 22 O -0.388 6.388 23 O -0.413 6.413 24 C -0.006 4.006 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.176 0.824 31 H 0.204 0.796 32 H 0.209 0.791 33 H 0.191 0.809 34 H 0.036 0.964 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.359 -19.312 -7.263 21.317 hybrid contribution 0.049 1.323 0.707 1.501 sum 5.408 -17.989 -6.555 19.895 Atomic orbital electron populations 1.69989 1.06184 1.25460 1.57912 1.25635 0.96664 1.00958 1.02045 0.85098 0.77164 0.78525 0.78188 1.20039 1.21676 1.20635 1.19388 0.91032 0.83487 1.43668 0.90167 1.44626 1.02718 1.00384 1.87215 1.21777 0.84086 0.93402 0.97523 1.23039 0.96841 0.95434 1.01034 1.23690 0.95944 0.83607 0.94477 0.86938 1.86479 1.70341 1.24870 1.38492 1.19206 0.89787 0.85661 0.92593 1.21735 1.05968 1.04027 0.92271 1.21985 0.88596 0.89853 1.01967 1.21648 1.02101 1.00662 0.91581 1.21345 0.90660 0.95635 0.96674 1.20941 1.17847 0.99310 0.81670 1.43782 0.97981 0.99525 1.03797 1.94416 1.59858 1.21181 1.63317 1.94655 1.43362 1.29622 1.73693 1.21773 0.94564 0.85546 0.98705 0.94002 0.97362 0.90179 0.88345 0.91819 0.82427 0.79585 0.79088 0.80874 0.96404 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.41 10.09 21.65 0.22 -55.19 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 3 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.80 10.27 84.03 0.86 -12.93 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -31.91 3.40 -691.89 -2.35 -34.26 16 10 C 0.16 7.60 5.89 86.85 0.51 8.11 16 11 C -0.13 -4.84 6.81 31.99 0.22 -4.62 16 12 C 0.08 2.71 2.74 31.79 0.09 2.80 16 13 H 0.11 3.15 6.26 -2.39 -0.01 3.14 16 14 O -0.29 -10.26 7.89 -71.24 -0.56 -10.82 16 15 C 0.18 4.96 6.65 22.51 0.15 5.11 16 16 C -0.22 -4.34 8.90 22.36 0.20 -4.14 16 17 C -0.01 -0.07 10.04 22.25 0.22 0.16 16 18 C -0.14 -1.36 10.04 22.28 0.22 -1.14 16 19 C -0.02 -0.41 9.55 22.25 0.21 -0.20 16 20 C -0.11 -3.05 6.87 36.47 0.25 -2.80 16 21 N 0.04 1.35 4.45 -46.24 -0.21 1.14 16 22 O -0.17 -5.55 18.45 18.88 0.35 -5.20 16 23 O -0.21 -8.46 17.24 25.61 0.44 -8.02 16 24 C 0.12 4.94 6.80 86.73 0.59 5.53 16 25 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 27 H 0.08 4.47 5.88 -2.39 -0.01 4.45 16 28 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.16 2.98 5.61 -2.91 -0.02 2.96 16 31 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.19 0.19 8.06 -2.91 -0.02 0.16 16 33 H 0.17 2.24 7.61 -2.91 -0.02 2.22 16 34 H 0.02 0.80 8.06 -2.39 -0.02 0.78 16 35 H 0.05 1.72 7.79 -2.39 -0.02 1.70 16 Total: -1.00 -73.29 300.34 5.03 -68.26 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.12 Total: 4.04 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 3.99 Total: -7.02 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.34 Total: -88.30 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.23 Total: -24.04 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.29 5.03 -68.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227479687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.224 kcal (2) G-P(sol) polarization free energy of solvation -73.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds