Wall clock time and date at job start Mon Mar 30 2020 23:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48491 * 109.47156 * 274.98390 * 3 2 1 5 5 H 1.48504 * 109.46989 * 34.98664 * 3 2 1 6 6 H 1.48501 * 109.46976 * 154.98330 * 3 2 1 7 7 C 1.38813 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00051 * 172.91122 * 7 2 1 9 9 N 1.36939 * 120.00020 * 352.90713 * 7 2 1 10 10 C 1.47032 * 125.64539 * 5.14267 * 9 7 2 11 11 C 1.54317 * 107.26868 * 181.09465 * 10 9 7 12 12 C 1.55160 * 102.94440 * 22.19119 * 11 10 9 13 13 H 1.09000 * 111.03172 * 82.58692 * 12 11 10 14 14 O 1.42899 * 111.00367 * 206.42397 * 12 11 10 15 15 C 1.35900 * 116.99758 * 198.09853 * 14 12 11 16 16 C 1.38745 * 120.05935 * 354.99449 * 15 14 12 17 17 C 1.38125 * 119.94751 * 179.74708 * 16 15 14 18 18 C 1.38282 * 120.05478 * 0.25696 * 17 16 15 19 19 C 1.38245 * 120.11109 * 0.02562 * 18 17 16 20 20 C 1.38164 * 120.05697 * 359.97438 * 19 18 17 21 21 N 1.48006 * 120.02834 * 179.97438 * 20 19 18 22 22 O 1.21795 * 120.00238 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99913 * 180.02562 * 21 20 19 24 24 C 1.47415 * 125.65172 * 185.18455 * 9 7 2 25 25 H 0.97009 * 120.00027 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.87761 * 300.50787 * 10 9 7 27 27 H 1.08994 * 109.88520 * 61.52153 * 10 9 7 28 28 H 1.08992 * 110.72126 * 263.82400 * 11 10 9 29 29 H 1.09001 * 110.71899 * 140.55435 * 11 10 9 30 30 H 1.08009 * 120.02461 * 0.02907 * 16 15 14 31 31 H 1.07998 * 119.97343 * 180.23372 * 17 16 15 32 32 H 1.08003 * 119.94799 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.97194 * 179.97438 * 19 18 17 34 34 H 1.08996 * 110.36977 * 36.99425 * 24 9 7 35 35 H 1.09007 * 110.46137 * 274.71983 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0840 -1.2057 -0.1160 9 7 1.3334 -2.3836 0.1454 10 6 -0.1282 -2.5322 0.2041 11 6 -0.4285 -4.0330 0.4014 12 6 0.8922 -4.5747 1.0093 13 1 0.9288 -4.3993 2.0845 14 8 1.0608 -5.9626 0.7134 15 6 1.9485 -6.6527 1.4767 16 6 2.7186 -5.9875 2.4199 17 6 3.6163 -6.6920 3.1981 18 6 3.7517 -8.0584 3.0342 19 6 2.9897 -8.7226 2.0911 20 6 2.0904 -8.0225 1.3102 21 7 1.2753 -8.7342 0.3003 22 8 1.3976 -9.9375 0.1571 23 8 0.4830 -8.1164 -0.3882 24 6 1.9495 -3.7170 0.2704 25 1 -0.4851 0.8401 0.0004 26 1 -0.5253 -1.9612 1.0434 27 1 -0.5742 -2.1817 -0.7266 28 1 -0.6387 -4.5131 -0.5543 29 1 -1.2579 -4.1724 1.0947 30 1 2.6129 -4.9203 2.5486 31 1 4.2132 -6.1752 3.9349 32 1 4.4545 -8.6075 3.6433 33 1 3.0976 -9.7898 1.9646 34 1 2.8667 -3.6577 0.8564 35 1 2.1560 -4.1353 -0.7148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227479688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:41 Heat of formation + Delta-G solvation = 18.708924 kcal Electronic energy + Delta-G solvation = -21529.328824 eV Core-core repulsion = 18111.262757 eV Total energy + Delta-G solvation = -3418.066067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.02188 -40.38189 -38.28313 -36.53166 -36.12061 -32.57283 -32.02244 -30.57576 -29.30360 -27.62597 -26.36174 -24.76423 -23.09263 -22.43723 -20.55616 -20.26054 -19.40820 -18.45841 -17.92353 -17.34562 -17.10273 -15.98326 -15.62720 -15.31791 -14.83341 -14.75507 -14.05839 -13.98622 -13.09727 -12.81001 -12.58988 -12.46854 -12.13491 -11.95575 -11.57525 -11.34229 -11.08385 -10.92629 -10.89532 -10.84984 -10.49374 -10.44223 -10.19256 -10.04830 -9.84423 -9.77993 -8.71677 -8.67872 -7.00675 -5.85558 -3.19885 -0.07089 0.85624 1.41113 1.55861 2.88096 3.14645 3.32806 3.38297 3.40208 4.20693 4.36086 4.41141 4.62221 4.66900 4.83926 4.98888 5.13131 5.22888 5.37807 5.43691 5.52478 5.58062 5.67986 5.89190 6.00750 6.13088 6.21878 6.28552 6.41096 6.43127 6.57219 7.19603 7.40700 7.45299 7.68657 7.86723 8.09726 9.06467 9.66329 10.30180 11.26382 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028044 B = 0.004371 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.181820 B = 6404.219069 C = 7095.960388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.176 3.824 11 C -0.132 4.132 12 C 0.055 3.945 13 H 0.085 0.915 14 O -0.269 6.269 15 C 0.210 3.790 16 C -0.213 4.213 17 C -0.026 4.026 18 C -0.166 4.166 19 C -0.024 4.024 20 C -0.091 4.091 21 N 0.038 4.962 22 O -0.193 6.193 23 O -0.133 6.133 24 C 0.119 3.881 25 H 0.255 0.745 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -14.213 8.006 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.052 3.948 11 C -0.170 4.170 12 C -0.001 4.001 13 H 0.103 0.897 14 O -0.178 6.178 15 C 0.159 3.841 16 C -0.232 4.232 17 C -0.045 4.045 18 C -0.185 4.185 19 C -0.043 4.043 20 C -0.176 4.176 21 N 0.555 4.445 22 O -0.399 6.399 23 O -0.355 6.355 24 C -0.008 4.008 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.175 0.825 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.884 -13.741 8.307 17.101 hybrid contribution 0.340 0.854 -0.145 0.930 sum 6.224 -12.888 8.163 16.476 Atomic orbital electron populations 1.69951 1.04986 1.25406 1.56094 1.24838 0.95716 0.97773 1.01601 0.86097 0.78675 0.83325 0.77641 1.21478 1.21489 1.20564 1.19031 0.91197 0.82178 1.44010 0.90271 1.44325 1.01659 1.00474 1.86358 1.21264 0.84467 0.87354 1.01737 1.23042 0.93783 0.99051 1.01144 1.24190 1.00114 0.75734 1.00062 0.89679 1.86456 1.54061 1.24537 1.52715 1.18808 0.87860 0.88792 0.88625 1.21613 1.00083 1.02392 0.99085 1.21431 0.93695 0.93994 0.95346 1.21052 1.02303 0.94665 1.00514 1.20888 0.90675 1.01334 0.91379 1.20553 1.05409 0.90072 1.01600 1.43333 0.99964 1.00772 1.00460 1.94482 1.73627 0.97222 1.74613 1.94632 1.30436 1.68096 1.42324 1.21970 0.93985 0.87343 0.97475 0.93485 0.92785 0.93058 0.90388 0.91068 0.82509 0.83880 0.83791 0.82782 0.93813 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.01 10.36 55.49 0.57 -25.44 16 2 C 0.00 -0.06 5.48 -17.43 -0.10 -0.16 16 3 Si 0.91 21.31 29.56 -169.99 -5.02 16.28 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.24 -6.35 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.60 -14.74 3.39 -170.08 -0.58 -15.32 16 10 C 0.18 4.10 5.39 -3.06 -0.02 4.09 16 11 C -0.13 -2.44 6.69 -24.90 -0.17 -2.60 16 12 C 0.06 0.95 2.82 -24.58 -0.07 0.88 16 13 H 0.09 1.33 6.57 -51.93 -0.34 0.99 16 14 O -0.27 -4.54 7.97 -41.55 -0.33 -4.88 16 15 C 0.21 3.04 6.62 -39.22 -0.26 2.78 16 16 C -0.21 -2.49 8.74 -39.44 -0.34 -2.84 16 17 C -0.03 -0.23 10.04 -39.61 -0.40 -0.63 16 18 C -0.17 -1.33 10.04 -39.56 -0.40 -1.73 16 19 C -0.02 -0.25 9.55 -39.61 -0.38 -0.62 16 20 C -0.09 -1.29 6.87 -79.80 -0.55 -1.83 16 21 N 0.04 0.63 4.45 34.03 0.15 0.78 16 22 O -0.19 -3.12 18.45 -29.46 -0.54 -3.66 16 23 O -0.13 -2.45 17.24 -36.49 -0.63 -3.08 16 24 C 0.12 2.38 6.62 -2.54 -0.02 2.36 16 25 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 27 H 0.05 1.33 7.60 -51.93 -0.39 0.93 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.16 1.84 5.34 -52.48 -0.28 1.56 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.15 1.31 7.61 -52.48 -0.40 0.91 16 34 H 0.04 0.81 7.31 -51.93 -0.38 0.43 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -30.96 300.28 -8.53 -39.49 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -3.83 Total: -1.91 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.84 Total: -6.80 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.15 Total: -39.97 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.50 Total: -11.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.96 -8.53 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227479688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.201 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds