Wall clock time and date at job start Mon Mar 30 2020 23:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48491 * 109.47156 * 274.98390 * 3 2 1 5 5 H 1.48504 * 109.46989 * 34.98664 * 3 2 1 6 6 H 1.48501 * 109.46976 * 154.98330 * 3 2 1 7 7 C 1.38813 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00051 * 172.91122 * 7 2 1 9 9 N 1.36939 * 120.00020 * 352.90713 * 7 2 1 10 10 C 1.47032 * 125.64539 * 5.14267 * 9 7 2 11 11 C 1.54317 * 107.26868 * 181.09465 * 10 9 7 12 12 C 1.55160 * 102.94440 * 22.19119 * 11 10 9 13 13 H 1.09000 * 111.03172 * 82.58692 * 12 11 10 14 14 O 1.42899 * 111.00367 * 206.42397 * 12 11 10 15 15 C 1.35900 * 116.99758 * 198.09853 * 14 12 11 16 16 C 1.38745 * 120.05935 * 354.99449 * 15 14 12 17 17 C 1.38125 * 119.94751 * 179.74708 * 16 15 14 18 18 C 1.38282 * 120.05478 * 0.25696 * 17 16 15 19 19 C 1.38245 * 120.11109 * 0.02562 * 18 17 16 20 20 C 1.38164 * 120.05697 * 359.97438 * 19 18 17 21 21 N 1.48006 * 120.02834 * 179.97438 * 20 19 18 22 22 O 1.21795 * 120.00238 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99913 * 180.02562 * 21 20 19 24 24 C 1.47415 * 125.65172 * 185.18455 * 9 7 2 25 25 H 0.97009 * 120.00027 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.87761 * 300.50787 * 10 9 7 27 27 H 1.08994 * 109.88520 * 61.52153 * 10 9 7 28 28 H 1.08992 * 110.72126 * 263.82400 * 11 10 9 29 29 H 1.09001 * 110.71899 * 140.55435 * 11 10 9 30 30 H 1.08009 * 120.02461 * 0.02907 * 16 15 14 31 31 H 1.07998 * 119.97343 * 180.23372 * 17 16 15 32 32 H 1.08003 * 119.94799 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.97194 * 179.97438 * 19 18 17 34 34 H 1.08996 * 110.36977 * 36.99425 * 24 9 7 35 35 H 1.09007 * 110.46137 * 274.71983 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0840 -1.2057 -0.1160 9 7 1.3334 -2.3836 0.1454 10 6 -0.1282 -2.5322 0.2041 11 6 -0.4285 -4.0330 0.4014 12 6 0.8922 -4.5747 1.0093 13 1 0.9288 -4.3993 2.0845 14 8 1.0608 -5.9626 0.7134 15 6 1.9485 -6.6527 1.4767 16 6 2.7186 -5.9875 2.4199 17 6 3.6163 -6.6920 3.1981 18 6 3.7517 -8.0584 3.0342 19 6 2.9897 -8.7226 2.0911 20 6 2.0904 -8.0225 1.3102 21 7 1.2753 -8.7342 0.3003 22 8 1.3976 -9.9375 0.1571 23 8 0.4830 -8.1164 -0.3882 24 6 1.9495 -3.7170 0.2704 25 1 -0.4851 0.8401 0.0004 26 1 -0.5253 -1.9612 1.0434 27 1 -0.5742 -2.1817 -0.7266 28 1 -0.6387 -4.5131 -0.5543 29 1 -1.2579 -4.1724 1.0947 30 1 2.6129 -4.9203 2.5486 31 1 4.2132 -6.1752 3.9349 32 1 4.4545 -8.6075 3.6433 33 1 3.0976 -9.7898 1.9646 34 1 2.8667 -3.6577 0.8564 35 1 2.1560 -4.1353 -0.7148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227479688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:40 Heat of formation + Delta-G solvation = 1.199331 kcal Electronic energy + Delta-G solvation = -21530.088097 eV Core-core repulsion = 18111.262757 eV Total energy + Delta-G solvation = -3418.825340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.18905 -41.51606 -39.46566 -37.98027 -37.42297 -34.38804 -33.02975 -31.70568 -30.91846 -29.25815 -27.45799 -26.59144 -24.21661 -23.43926 -22.19594 -21.78449 -20.53684 -19.66021 -19.16569 -18.83183 -18.54374 -17.08030 -16.81757 -16.70684 -16.26491 -15.89267 -15.52180 -15.35004 -14.55961 -14.14118 -14.10850 -13.76968 -13.36204 -13.15310 -12.98037 -12.73329 -12.64318 -12.60419 -12.22691 -12.19664 -12.10469 -12.05398 -11.94938 -11.67864 -11.59709 -10.73210 -10.65467 -9.66519 -9.00602 -7.91176 -5.28125 -1.13294 0.01408 0.35517 0.48342 1.47042 1.47986 1.57651 1.73310 2.32364 2.47342 3.27731 3.29130 3.40479 3.56003 3.72116 3.79443 3.83414 3.91465 3.98271 4.10884 4.41239 4.51244 4.58281 4.71867 4.77923 4.84542 4.91884 4.99691 5.15620 5.25529 5.39640 5.46874 5.53795 5.66267 6.00446 6.13156 6.58892 7.02219 7.67216 8.31161 9.19818 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028044 B = 0.004371 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.181820 B = 6404.219069 C = 7095.960388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.058 4.058 3 Si 0.980 3.020 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.250 4.250 8 H 0.086 0.914 9 N -0.620 5.620 10 C 0.186 3.814 11 C -0.123 4.123 12 C 0.077 3.923 13 H 0.106 0.894 14 O -0.289 6.289 15 C 0.179 3.821 16 C -0.221 4.221 17 C -0.008 4.008 18 C -0.141 4.141 19 C -0.024 4.024 20 C -0.111 4.111 21 N 0.039 4.961 22 O -0.174 6.174 23 O -0.204 6.204 24 C 0.119 3.881 25 H 0.250 0.750 26 H 0.030 0.970 27 H 0.013 0.987 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.184 0.816 32 H 0.192 0.808 33 H 0.175 0.825 34 H 0.062 0.938 35 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 -15.613 10.708 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.348 5.348 10 C 0.061 3.939 11 C -0.161 4.161 12 C 0.021 3.979 13 H 0.123 0.877 14 O -0.200 6.200 15 C 0.129 3.871 16 C -0.240 4.240 17 C -0.026 4.026 18 C -0.159 4.159 19 C -0.043 4.043 20 C -0.196 4.196 21 N 0.550 4.450 22 O -0.389 6.389 23 O -0.410 6.410 24 C -0.007 4.007 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.172 0.828 31 H 0.202 0.798 32 H 0.209 0.791 33 H 0.192 0.808 34 H 0.081 0.919 35 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.733 -15.089 10.962 20.594 hybrid contribution -0.360 1.087 -0.870 1.437 sum 8.374 -14.002 10.092 19.184 Atomic orbital electron populations 1.70163 1.06431 1.25685 1.57341 1.25682 0.96562 1.01078 1.01857 0.85049 0.77981 0.78937 0.77241 1.21679 1.21794 1.18886 1.19435 0.91755 0.83330 1.43333 0.89659 1.44595 1.02338 1.01620 1.86266 1.20969 0.84015 0.90166 0.98746 1.22849 0.95701 0.95671 1.01876 1.23783 0.97542 0.76208 1.00402 0.87684 1.86419 1.55684 1.23693 1.54161 1.19144 0.88873 0.89063 0.89983 1.21741 1.00645 1.02489 0.99133 1.21969 0.91897 0.94399 0.94297 1.21634 1.01017 0.94477 0.98819 1.21341 0.89656 1.02385 0.90898 1.20914 1.06519 0.90163 1.02029 1.43751 0.99848 1.00763 1.00672 1.94422 1.72728 0.97687 1.74056 1.94640 1.33129 1.68297 1.44924 1.22037 0.95486 0.85744 0.97410 0.94083 0.95159 0.96916 0.90891 0.88634 0.82756 0.79833 0.79120 0.80798 0.91948 0.96522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.65 10.36 21.65 0.22 -55.43 16 2 C -0.06 -3.22 5.48 84.86 0.46 -2.75 16 3 Si 0.98 44.20 29.56 68.60 2.03 46.22 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.25 -13.63 10.27 84.03 0.86 -12.76 16 8 H 0.09 4.41 7.84 -2.91 -0.02 4.38 16 9 N -0.62 -31.23 3.39 -692.01 -2.35 -33.58 16 10 C 0.19 9.07 5.39 86.72 0.47 9.54 16 11 C -0.12 -4.67 6.69 31.78 0.21 -4.46 16 12 C 0.08 2.66 2.82 31.99 0.09 2.75 16 13 H 0.11 3.18 6.57 -2.39 -0.02 3.16 16 14 O -0.29 -9.93 7.97 -71.27 -0.57 -10.50 16 15 C 0.18 4.99 6.62 22.51 0.15 5.14 16 16 C -0.22 -4.53 8.74 22.36 0.20 -4.34 16 17 C -0.01 -0.09 10.04 22.25 0.22 0.13 16 18 C -0.14 -1.41 10.04 22.28 0.22 -1.18 16 19 C -0.02 -0.40 9.55 22.25 0.21 -0.19 16 20 C -0.11 -2.97 6.87 36.47 0.25 -2.72 16 21 N 0.04 1.32 4.45 -46.24 -0.21 1.11 16 22 O -0.17 -5.48 18.45 18.89 0.35 -5.13 16 23 O -0.20 -7.97 17.24 25.61 0.44 -7.53 16 24 C 0.12 4.80 6.62 86.86 0.58 5.38 16 25 H 0.25 14.24 8.31 -92.70 -0.77 13.46 16 26 H 0.03 1.60 7.30 -2.39 -0.02 1.58 16 27 H 0.01 0.70 7.60 -2.39 -0.02 0.68 16 28 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.15 3.23 5.34 -2.91 -0.02 3.21 16 31 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 33 H 0.17 2.21 7.61 -2.91 -0.02 2.19 16 34 H 0.06 2.26 7.31 -2.39 -0.02 2.24 16 35 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -71.95 300.28 4.96 -66.99 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.12 Total: 3.31 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 3.93 Total: -5.47 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -2.33 Total: -87.90 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.22 Total: -23.16 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.95 4.96 -66.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227479688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.187 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds