Wall clock time and date at job start Mon Mar 30 2020 23:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48505 * 109.46881 * 6.06938 * 3 2 1 5 5 H 1.48501 * 109.47145 * 246.06800 * 3 2 1 6 6 H 1.48500 * 109.47287 * 126.06560 * 3 2 1 7 7 C 1.38817 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00057 * 347.40023 * 7 2 1 9 9 N 1.36942 * 119.99632 * 167.40209 * 7 2 1 10 10 C 1.47021 * 125.64952 * 353.48213 * 9 7 2 11 11 C 1.54319 * 107.26802 * 181.02295 * 10 9 7 12 12 C 1.55150 * 102.94366 * 22.19432 * 11 10 9 13 13 H 1.09001 * 111.00643 * 82.61017 * 12 11 10 14 14 O 1.42904 * 111.00022 * 206.42281 * 12 11 10 15 15 C 1.35902 * 116.99874 * 203.82520 * 14 12 11 16 16 C 1.38735 * 120.05745 * 174.77348 * 15 14 12 17 17 C 1.38147 * 119.94135 * 179.77304 * 16 15 14 18 18 C 1.38261 * 120.05787 * 0.50138 * 17 16 15 19 19 N 1.48011 * 119.94625 * 179.77158 * 18 17 16 20 20 O 1.21797 * 120.00032 * 179.97438 * 19 18 17 21 21 O 1.21798 * 119.99413 * 359.97438 * 19 18 17 22 22 C 1.38273 * 120.11385 * 359.75158 * 18 17 16 23 23 C 1.38140 * 120.04989 * 359.97438 * 22 18 17 24 24 C 1.47419 * 125.64349 * 173.17384 * 9 7 2 25 25 H 0.97002 * 120.00069 * 185.08050 * 1 2 3 26 26 H 1.08995 * 109.87859 * 300.44244 * 10 9 7 27 27 H 1.09005 * 109.87859 * 61.44931 * 10 9 7 28 28 H 1.08999 * 110.71916 * 140.56078 * 11 10 9 29 29 H 1.09000 * 110.72264 * 263.64685 * 11 10 9 30 30 H 1.07999 * 120.02408 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.96965 * 180.23716 * 17 16 15 32 32 H 1.08000 * 119.97177 * 179.97438 * 22 18 17 33 33 H 1.08006 * 120.02821 * 180.02562 * 23 22 18 34 34 H 1.09007 * 110.36863 * 274.74266 * 24 9 7 35 35 H 1.08998 * 110.37102 * 37.06977 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2920 2.7425 0.1480 5 1 2.9896 1.7624 -1.2797 6 1 3.2116 1.6342 1.1317 7 6 2.0102 -1.2022 0.0005 8 1 1.4897 -2.1261 0.2050 9 7 3.3549 -1.2166 -0.2581 10 6 4.1583 -0.0607 -0.6823 11 6 5.6067 -0.5563 -0.8772 12 6 5.4254 -2.0810 -1.0995 13 1 5.1692 -2.2969 -2.1368 14 8 6.5958 -2.7990 -0.7037 15 6 6.7945 -4.0169 -1.2730 16 6 7.9625 -4.7209 -1.0182 17 6 8.1599 -5.9608 -1.5946 18 6 7.1993 -6.4957 -2.4329 19 7 7.4156 -7.8221 -3.0530 20 8 6.5699 -8.2944 -3.7913 21 8 8.4395 -8.4411 -2.8250 22 6 6.0366 -5.7938 -2.6926 23 6 5.8320 -4.5561 -2.1143 24 6 4.2378 -2.3923 -0.1512 25 1 -0.4850 -0.8368 0.0744 26 1 3.7720 0.3345 -1.6218 27 1 4.1288 0.7129 0.0851 28 1 6.0593 -0.0901 -1.7524 29 1 6.2040 -0.3619 0.0136 30 1 8.7149 -4.3017 -0.3667 31 1 9.0673 -6.5109 -1.3935 32 1 5.2880 -6.2136 -3.3481 33 1 4.9235 -4.0083 -2.3171 34 1 4.5889 -2.5112 0.8739 35 1 3.7152 -3.2904 -0.4806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227523579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:44 Heat of formation + Delta-G solvation = 26.921902 kcal Electronic energy + Delta-G solvation = -20969.873802 eV Core-core repulsion = 17552.163876 eV Total energy + Delta-G solvation = -3417.709926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.27079 -40.73229 -38.53082 -36.83235 -36.65515 -32.75400 -31.81047 -31.33255 -29.78562 -28.56793 -26.31421 -24.35661 -23.58054 -22.46767 -21.19318 -20.60568 -19.54237 -18.76294 -18.59953 -17.70869 -17.62037 -16.31234 -15.93616 -15.29058 -15.10684 -14.89356 -14.21572 -13.95665 -13.68890 -13.54325 -13.07794 -12.95736 -12.52799 -12.34160 -11.78037 -11.66553 -11.56629 -11.31232 -11.25009 -11.24408 -10.85649 -10.76488 -10.06923 -9.78625 -9.50514 -9.15729 -9.01083 -8.89468 -7.25139 -6.44658 -3.39747 -0.26356 0.62263 1.21576 1.31196 2.69475 2.99989 3.25041 3.33964 3.57280 4.08009 4.17097 4.34762 4.45422 4.56076 4.67422 4.73818 4.82730 4.97758 5.01411 5.18199 5.32151 5.34980 5.47291 5.52535 5.59721 5.67956 5.87656 5.89032 6.04994 6.18972 6.22177 6.30477 6.48195 6.96884 7.41974 7.54542 8.16077 8.87439 9.36577 10.00988 11.05530 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035624 B = 0.003656 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.794123 B = 7657.795078 C = 8216.801884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.023 4.023 3 Si 1.079 2.921 4 H -0.299 1.299 5 H -0.285 1.285 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.094 3.906 11 C -0.118 4.118 12 C 0.056 3.944 13 H 0.093 0.907 14 O -0.289 6.289 15 C 0.196 3.804 16 C -0.157 4.157 17 C -0.015 4.015 18 C -0.095 4.095 19 N 0.038 4.962 20 O -0.170 6.170 21 O -0.172 6.172 22 C -0.009 4.009 23 C -0.210 4.210 24 C 0.121 3.879 25 H 0.262 0.738 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.037 0.963 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.964 -7.251 -3.964 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.223 4.223 3 Si 0.914 3.086 4 H -0.227 1.227 5 H -0.212 1.212 6 H -0.225 1.225 7 C -0.456 4.456 8 H 0.098 0.902 9 N -0.338 5.338 10 C -0.030 4.030 11 C -0.156 4.156 12 C 0.000 4.000 13 H 0.110 0.890 14 O -0.199 6.199 15 C 0.148 3.852 16 C -0.176 4.176 17 C -0.034 4.034 18 C -0.179 4.179 19 N 0.555 4.445 20 O -0.385 6.385 21 O -0.386 6.386 22 C -0.028 4.028 23 C -0.229 4.229 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.055 0.945 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.656 -4.862 -3.576 17.715 hybrid contribution 0.052 -2.122 -0.061 2.124 sum 16.707 -6.984 -3.636 18.470 Atomic orbital electron populations 1.70912 1.05461 1.29716 1.50594 1.25849 0.96563 1.01057 0.98787 0.83732 0.72962 0.75758 0.76170 1.22735 1.21209 1.22505 1.20179 0.80629 0.96070 1.48724 0.90156 1.44662 1.05030 1.03525 1.80559 1.22249 0.89017 0.92440 0.99318 1.22667 0.98409 0.91561 1.02974 1.24169 0.83654 0.92455 0.99718 0.88972 1.86169 1.44859 1.26550 1.62361 1.19475 0.92501 0.85087 0.88160 1.20443 0.97635 0.94449 1.05120 1.20790 0.97793 0.93925 0.90933 1.20948 1.01221 0.87201 1.08496 1.43527 0.99747 1.02341 0.98914 1.94537 1.39297 1.71402 1.33220 1.94514 1.17117 1.60741 1.66222 1.20839 0.94259 0.92467 0.95208 1.21494 1.02092 0.97195 1.02124 1.21969 0.89704 0.92297 0.96601 0.92726 0.92456 0.93636 0.90173 0.89897 0.82766 0.82486 0.82713 0.82492 0.94492 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.70 55.49 0.76 -27.46 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 3 Si 1.08 25.47 24.50 -169.99 -4.17 21.30 16 4 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.28 -6.01 5.45 56.52 0.31 -5.70 16 6 H -0.30 -6.66 6.47 56.52 0.37 -6.29 16 7 C -0.33 -9.00 10.60 -15.05 -0.16 -9.16 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 N -0.61 -13.88 3.36 -169.94 -0.57 -14.45 16 10 C 0.09 1.85 4.65 -3.07 -0.01 1.84 16 11 C -0.12 -1.73 6.68 -24.90 -0.17 -1.89 16 12 C 0.06 0.80 2.82 -24.47 -0.07 0.73 16 13 H 0.09 1.19 6.20 -51.93 -0.32 0.87 16 14 O -0.29 -3.66 9.94 -19.43 -0.19 -3.85 16 15 C 0.20 2.18 6.68 -39.21 -0.26 1.91 16 16 C -0.16 -1.44 9.99 -39.43 -0.39 -1.83 16 17 C -0.02 -0.14 9.55 -39.61 -0.38 -0.52 16 18 C -0.09 -1.07 6.85 -79.93 -0.55 -1.61 16 19 N 0.04 0.51 4.45 33.97 0.15 0.66 16 20 O -0.17 -2.40 18.44 -29.46 -0.54 -2.95 16 21 O -0.17 -2.33 18.44 -29.46 -0.54 -2.88 16 22 C -0.01 -0.09 9.55 -39.60 -0.38 -0.47 16 23 C -0.21 -2.26 8.96 -39.43 -0.35 -2.62 16 24 C 0.12 2.20 6.89 -2.41 -0.02 2.18 16 25 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 26 H 0.06 1.16 6.14 -51.93 -0.32 0.85 16 27 H 0.05 0.95 3.97 -51.93 -0.21 0.75 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.16 1.15 7.60 -52.49 -0.40 0.75 16 32 H 0.16 1.46 7.60 -52.49 -0.40 1.06 16 33 H 0.16 1.68 5.71 -52.48 -0.30 1.38 16 34 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 LS Contribution 294.96 15.07 4.44 4.44 Total: -1.00 -31.20 294.96 -7.24 -38.44 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.75 Total: -1.08 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.83 Total: -12.18 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.34 Total: -41.25 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.28 Total: -9.68 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.17 Total: 21.30 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.20 -7.24 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227523579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.367 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds