Wall clock time and date at job start Mon Mar 30 2020 23:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48505 * 109.46881 * 6.06938 * 3 2 1 5 5 H 1.48501 * 109.47145 * 246.06800 * 3 2 1 6 6 H 1.48500 * 109.47287 * 126.06560 * 3 2 1 7 7 C 1.38817 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00057 * 347.40023 * 7 2 1 9 9 N 1.36942 * 119.99632 * 167.40209 * 7 2 1 10 10 C 1.47021 * 125.64952 * 353.48213 * 9 7 2 11 11 C 1.54319 * 107.26802 * 181.02295 * 10 9 7 12 12 C 1.55150 * 102.94366 * 22.19432 * 11 10 9 13 13 H 1.09001 * 111.00643 * 82.61017 * 12 11 10 14 14 O 1.42904 * 111.00022 * 206.42281 * 12 11 10 15 15 C 1.35902 * 116.99874 * 203.82520 * 14 12 11 16 16 C 1.38735 * 120.05745 * 174.77348 * 15 14 12 17 17 C 1.38147 * 119.94135 * 179.77304 * 16 15 14 18 18 C 1.38261 * 120.05787 * 0.50138 * 17 16 15 19 19 N 1.48011 * 119.94625 * 179.77158 * 18 17 16 20 20 O 1.21797 * 120.00032 * 179.97438 * 19 18 17 21 21 O 1.21798 * 119.99413 * 359.97438 * 19 18 17 22 22 C 1.38273 * 120.11385 * 359.75158 * 18 17 16 23 23 C 1.38140 * 120.04989 * 359.97438 * 22 18 17 24 24 C 1.47419 * 125.64349 * 173.17384 * 9 7 2 25 25 H 0.97002 * 120.00069 * 185.08050 * 1 2 3 26 26 H 1.08995 * 109.87859 * 300.44244 * 10 9 7 27 27 H 1.09005 * 109.87859 * 61.44931 * 10 9 7 28 28 H 1.08999 * 110.71916 * 140.56078 * 11 10 9 29 29 H 1.09000 * 110.72264 * 263.64685 * 11 10 9 30 30 H 1.07999 * 120.02408 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.96965 * 180.23716 * 17 16 15 32 32 H 1.08000 * 119.97177 * 179.97438 * 22 18 17 33 33 H 1.08006 * 120.02821 * 180.02562 * 23 22 18 34 34 H 1.09007 * 110.36863 * 274.74266 * 24 9 7 35 35 H 1.08998 * 110.37102 * 37.06977 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2920 2.7425 0.1480 5 1 2.9896 1.7624 -1.2797 6 1 3.2116 1.6342 1.1317 7 6 2.0102 -1.2022 0.0005 8 1 1.4897 -2.1261 0.2050 9 7 3.3549 -1.2166 -0.2581 10 6 4.1583 -0.0607 -0.6823 11 6 5.6067 -0.5563 -0.8772 12 6 5.4254 -2.0810 -1.0995 13 1 5.1692 -2.2969 -2.1368 14 8 6.5958 -2.7990 -0.7037 15 6 6.7945 -4.0169 -1.2730 16 6 7.9625 -4.7209 -1.0182 17 6 8.1599 -5.9608 -1.5946 18 6 7.1993 -6.4957 -2.4329 19 7 7.4156 -7.8221 -3.0530 20 8 6.5699 -8.2944 -3.7913 21 8 8.4395 -8.4411 -2.8250 22 6 6.0366 -5.7938 -2.6926 23 6 5.8320 -4.5561 -2.1143 24 6 4.2378 -2.3923 -0.1512 25 1 -0.4850 -0.8368 0.0744 26 1 3.7720 0.3345 -1.6218 27 1 4.1288 0.7129 0.0851 28 1 6.0593 -0.0901 -1.7524 29 1 6.2040 -0.3619 0.0136 30 1 8.7149 -4.3017 -0.3667 31 1 9.0673 -6.5109 -1.3935 32 1 5.2880 -6.2136 -3.3481 33 1 4.9235 -4.0083 -2.3171 34 1 4.5889 -2.5112 0.8739 35 1 3.7152 -3.2904 -0.4806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227523579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:44 Heat of formation + Delta-G solvation = 7.323217 kcal Electronic energy + Delta-G solvation = -20970.723664 eV Core-core repulsion = 17552.163876 eV Total energy + Delta-G solvation = -3418.559789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.24542 -41.68937 -39.65645 -38.10318 -37.67172 -34.66707 -32.67925 -32.33594 -31.32683 -29.96047 -27.33572 -25.97696 -24.55512 -23.43821 -22.72280 -21.93078 -20.43654 -19.81644 -19.63176 -19.56517 -18.60289 -17.51009 -17.14446 -16.48189 -16.22127 -16.01802 -15.51871 -15.22506 -14.95732 -14.57026 -14.24677 -14.16069 -14.12653 -13.49729 -13.18824 -13.09083 -12.76647 -12.59839 -12.32013 -12.30661 -12.13262 -11.93291 -11.67276 -11.40995 -11.06434 -10.80762 -10.55378 -9.87865 -9.19226 -8.67548 -5.54245 -1.21748 -0.14288 0.27765 0.39260 1.37796 1.49654 1.64629 1.76126 2.18533 2.52630 3.11665 3.21876 3.25574 3.38206 3.43953 3.57039 3.64187 3.81757 3.85573 4.11937 4.22579 4.32385 4.45382 4.58420 4.60384 4.66893 4.73053 4.80859 4.84055 4.94814 5.05419 5.10025 5.32164 5.44924 5.98653 6.03586 6.49599 6.75862 7.35315 7.98434 8.83837 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035624 B = 0.003656 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.794123 B = 7657.795078 C = 8216.801884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.083 4.083 3 Si 1.115 2.885 4 H -0.315 1.315 5 H -0.241 1.241 6 H -0.279 1.279 7 C -0.316 4.316 8 H 0.046 0.954 9 N -0.631 5.631 10 C 0.082 3.918 11 C -0.107 4.107 12 C 0.075 3.925 13 H 0.108 0.892 14 O -0.286 6.286 15 C 0.184 3.816 16 C -0.143 4.143 17 C -0.007 4.007 18 C -0.105 4.105 19 N 0.039 4.961 20 O -0.203 6.203 21 O -0.172 6.172 22 C -0.012 4.012 23 C -0.212 4.212 24 C 0.114 3.886 25 H 0.246 0.754 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.183 0.817 31 H 0.180 0.820 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.033 0.967 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.583 -6.513 -4.285 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.275 4.275 3 Si 0.942 3.058 4 H -0.245 1.245 5 H -0.165 1.165 6 H -0.207 1.207 7 C -0.444 4.444 8 H 0.064 0.936 9 N -0.360 5.360 10 C -0.042 4.042 11 C -0.144 4.144 12 C 0.018 3.982 13 H 0.126 0.874 14 O -0.197 6.197 15 C 0.136 3.864 16 C -0.162 4.162 17 C -0.026 4.026 18 C -0.189 4.189 19 N 0.551 4.449 20 O -0.410 6.410 21 O -0.388 6.388 22 C -0.031 4.031 23 C -0.231 4.231 24 C -0.012 4.012 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.201 0.799 31 H 0.198 0.802 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.051 0.949 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.300 -4.188 -3.942 21.099 hybrid contribution -1.021 -2.516 0.112 2.717 sum 19.279 -6.704 -3.831 20.768 Atomic orbital electron populations 1.71030 1.06946 1.28818 1.54113 1.27244 0.96514 1.04857 0.98929 0.83374 0.72343 0.71210 0.78839 1.24484 1.16543 1.20685 1.20059 0.83240 0.94637 1.46506 0.93606 1.44690 1.04175 1.06437 1.80695 1.22416 0.91724 0.91483 0.98567 1.22647 0.95054 0.91325 1.05396 1.23812 0.82603 0.92677 0.99119 0.87449 1.86162 1.43591 1.27143 1.62766 1.19708 0.93335 0.84822 0.88501 1.20720 0.97274 0.93704 1.04451 1.21086 0.97928 0.93912 0.89682 1.21157 1.02187 0.86310 1.09238 1.43804 0.99433 1.02938 0.98703 1.94538 1.39686 1.72259 1.34525 1.94489 1.17097 1.61248 1.65937 1.20911 0.94395 0.92442 0.95331 1.21480 1.02163 0.97196 1.02303 1.22114 0.90819 0.90636 0.97613 0.94445 0.92821 0.94145 0.86435 0.88559 0.79941 0.80225 0.82271 0.82684 0.94886 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.08 13.70 21.65 0.30 -60.78 16 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 1.12 50.65 24.50 68.60 1.68 52.33 16 4 H -0.32 -15.05 7.11 99.48 0.71 -14.34 16 5 H -0.24 -9.21 5.45 99.48 0.54 -8.66 16 6 H -0.28 -11.76 6.47 99.48 0.64 -11.11 16 7 C -0.32 -17.68 10.60 84.03 0.89 -16.79 16 8 H 0.05 2.80 8.06 -2.91 -0.02 2.77 16 9 N -0.63 -28.20 3.36 -691.56 -2.32 -30.52 16 10 C 0.08 2.97 4.65 86.73 0.40 3.37 16 11 C -0.11 -2.62 6.68 31.78 0.21 -2.41 16 12 C 0.07 1.86 2.82 32.06 0.09 1.95 16 13 H 0.11 2.40 6.20 -2.39 -0.01 2.38 16 14 O -0.29 -6.10 9.94 -92.45 -0.92 -7.02 16 15 C 0.18 3.45 6.68 22.51 0.15 3.60 16 16 C -0.14 -2.01 9.99 22.37 0.22 -1.79 16 17 C -0.01 -0.11 9.55 22.25 0.21 0.10 16 18 C -0.10 -2.14 6.85 36.39 0.25 -1.89 16 19 N 0.04 0.98 4.45 -46.43 -0.21 0.78 16 20 O -0.20 -5.69 18.44 18.89 0.35 -5.34 16 21 O -0.17 -4.38 18.44 18.89 0.35 -4.03 16 22 C -0.01 -0.23 9.55 22.25 0.21 -0.02 16 23 C -0.21 -4.11 8.96 22.37 0.20 -3.91 16 24 C 0.11 3.99 6.89 86.93 0.60 4.59 16 25 H 0.25 15.72 8.73 -92.71 -0.81 14.91 16 26 H 0.05 1.99 6.14 -2.39 -0.01 1.98 16 27 H 0.04 1.55 3.97 -2.38 -0.01 1.54 16 28 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.18 1.91 7.60 -2.91 -0.02 1.89 16 32 H 0.16 2.90 7.60 -2.91 -0.02 2.88 16 33 H 0.16 3.05 5.71 -2.91 -0.02 3.03 16 34 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.05 1.62 7.87 -2.39 -0.02 1.60 16 Total: -1.00 -70.33 294.96 4.00 -66.33 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.86 Total: 5.79 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.91 Total: -17.54 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -2.23 Total: -90.53 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.22 Total: -16.39 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.68 Total: 52.33 kcal Total: -70.33 4.00 -66.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227523579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.658 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds