Wall clock time and date at job start Mon Mar 30 2020 23:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47167 * 239.99582 * 3 2 1 5 5 H 1.48497 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47138 * 119.99798 * 3 2 1 7 7 C 1.38806 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00302 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64959 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.27383 * 178.95976 * 10 9 7 12 12 C 1.55153 * 102.94193 * 337.80628 * 11 10 9 13 13 H 1.09001 * 111.00591 * 277.38644 * 12 11 10 14 14 O 1.42903 * 111.00610 * 153.57796 * 12 11 10 15 15 C 1.35904 * 116.99998 * 156.29031 * 14 12 11 16 16 C 1.38728 * 120.05651 * 5.66171 * 15 14 12 17 17 C 1.38145 * 119.94571 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.05022 * 0.02562 * 17 16 15 19 19 N 1.48010 * 119.93898 * 179.71848 * 18 17 16 20 20 O 1.21799 * 120.00098 * 0.02562 * 19 18 17 21 21 O 1.21803 * 119.99557 * 179.97438 * 19 18 17 22 22 C 1.38260 * 120.11614 * 359.97438 * 18 17 16 23 23 C 1.38142 * 120.05667 * 0.02562 * 22 18 17 24 24 C 1.47432 * 125.65264 * 179.97438 * 9 7 2 25 25 H 0.97000 * 120.00245 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.88541 * 59.53872 * 10 9 7 27 27 H 1.09009 * 109.87846 * 298.37624 * 10 9 7 28 28 H 1.09003 * 110.71880 * 219.44093 * 11 10 9 29 29 H 1.08998 * 110.87666 * 96.23744 * 11 10 9 30 30 H 1.08003 * 120.02853 * 359.96145 * 16 15 14 31 31 H 1.08000 * 119.97564 * 180.02562 * 17 16 15 32 32 H 1.08004 * 119.97224 * 179.97438 * 22 18 17 33 33 H 1.08001 * 120.03003 * 180.02562 * 23 22 18 34 34 H 1.08998 * 110.36257 * 85.26519 * 24 9 7 35 35 H 1.09002 * 110.36252 * 322.95287 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0028 11 6 -0.4483 -4.0441 -0.0230 12 6 0.8517 -4.6563 -0.6084 13 1 0.8555 -4.5977 -1.6969 14 8 1.0249 -6.0055 -0.1704 15 6 1.7943 -6.8125 -0.9475 16 6 2.4656 -6.2882 -2.0425 17 6 3.2475 -7.1104 -2.8305 18 6 3.3607 -8.4551 -2.5290 19 7 4.1940 -9.3351 -3.3786 20 8 4.7797 -8.8745 -4.3421 21 8 4.2949 -10.5196 -3.1136 22 6 2.6926 -8.9801 -1.4383 23 6 1.9095 -8.1620 -0.6471 24 6 1.9336 -3.7311 0.0017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5582 -2.0526 -0.8806 27 1 -0.5535 -2.0841 0.9049 28 1 -1.2988 -4.2518 -0.6723 29 1 -0.6323 -4.4201 0.9834 30 1 2.3770 -5.2381 -2.2788 31 1 3.7707 -6.7027 -3.6828 32 1 2.7823 -10.0308 -1.2051 33 1 1.3882 -8.5725 0.2050 34 1 2.1676 -4.0414 1.0201 35 1 2.8326 -3.7407 -0.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227523580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:49 Heat of formation + Delta-G solvation = 15.313809 kcal Electronic energy + Delta-G solvation = -20880.823650 eV Core-core repulsion = 17462.610360 eV Total energy + Delta-G solvation = -3418.213291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.20681 -40.59052 -38.30351 -36.59654 -36.46311 -32.60355 -31.68940 -31.18159 -29.45887 -27.74744 -26.21362 -24.71947 -23.51553 -22.41841 -20.64426 -20.35556 -19.45373 -18.69086 -18.41917 -17.56141 -17.20745 -16.07561 -15.50303 -15.13941 -14.89378 -14.47884 -14.22067 -13.99609 -13.43920 -13.15058 -12.88823 -12.64353 -12.21402 -12.00038 -11.63661 -11.38189 -11.24928 -11.19717 -11.11563 -10.91428 -10.60881 -10.54548 -10.24680 -10.13804 -9.87869 -9.69498 -8.85639 -8.77057 -7.07005 -5.89137 -3.25071 -0.18729 0.71092 1.29447 1.38111 2.87227 3.09259 3.31131 3.36016 3.36906 4.17286 4.25966 4.34702 4.47002 4.70544 4.90767 4.95675 5.02030 5.24378 5.31441 5.38322 5.42990 5.48185 5.57373 5.73548 5.88082 5.99156 6.13481 6.18387 6.30483 6.31477 6.41816 7.13776 7.34042 7.35655 7.60660 7.62254 8.04387 9.01914 9.61414 10.23759 11.22446 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.003558 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.563194 B = 7867.473611 C = 8570.095808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.003 4.003 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.135 4.135 12 C 0.056 3.944 13 H 0.088 0.912 14 O -0.290 6.290 15 C 0.199 3.801 16 C -0.210 4.210 17 C -0.009 4.009 18 C -0.097 4.097 19 N 0.039 4.961 20 O -0.172 6.172 21 O -0.174 6.174 22 C -0.016 4.016 23 C -0.159 4.159 24 C 0.120 3.880 25 H 0.256 0.744 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.032 0.968 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -14.712 -2.441 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.200 4.200 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.001 4.001 13 H 0.106 0.894 14 O -0.200 6.200 15 C 0.150 3.850 16 C -0.229 4.229 17 C -0.028 4.028 18 C -0.181 4.181 19 N 0.555 4.445 20 O -0.386 6.386 21 O -0.388 6.388 22 C -0.035 4.035 23 C -0.178 4.178 24 C -0.007 4.007 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.050 0.950 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.793 -14.072 -1.848 14.215 hybrid contribution 0.721 0.810 -0.349 1.139 sum 1.515 -13.262 -2.196 13.528 Atomic orbital electron populations 1.69913 1.04965 1.25591 1.56315 1.24828 0.95775 0.97850 1.01556 0.86145 0.78483 0.82745 0.78050 1.20980 1.21431 1.20988 1.19003 0.90508 0.82001 1.44982 0.90238 1.44323 1.01609 0.99435 1.87525 1.21241 0.84454 0.86983 1.02043 1.23080 0.94256 0.98961 1.01047 1.24182 0.99772 0.76722 0.99376 0.89441 1.86195 1.62816 1.23646 1.47344 1.19506 0.86828 0.90701 0.88007 1.21507 1.01828 1.02281 0.97313 1.20831 0.93839 0.89892 0.98249 1.20930 1.06445 0.91554 0.99169 1.43537 0.99293 1.01325 1.00329 1.94530 1.45990 1.78964 1.19119 1.94511 1.68292 0.99458 1.76490 1.20775 0.91092 1.01478 0.90136 1.20447 1.03759 0.90432 1.03194 1.21919 0.93925 0.86649 0.98185 0.93401 0.92822 0.92963 0.91086 0.90848 0.82456 0.82797 0.82583 0.82830 0.94995 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.63 10.31 55.49 0.57 -25.06 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -6.26 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.29 3.40 -170.09 -0.58 -14.87 16 10 C 0.18 3.94 5.37 -3.07 -0.02 3.93 16 11 C -0.14 -2.26 6.69 -24.90 -0.17 -2.43 16 12 C 0.06 0.87 2.81 -24.60 -0.07 0.80 16 13 H 0.09 1.27 6.24 -51.93 -0.32 0.94 16 14 O -0.29 -4.01 9.95 -19.44 -0.19 -4.21 16 15 C 0.20 2.37 6.68 -39.22 -0.26 2.11 16 16 C -0.21 -2.41 8.94 -39.43 -0.35 -2.76 16 17 C -0.01 -0.10 9.55 -39.60 -0.38 -0.48 16 18 C -0.10 -1.14 6.85 -79.93 -0.55 -1.69 16 19 N 0.04 0.54 4.45 33.97 0.15 0.69 16 20 O -0.17 -2.48 18.44 -29.46 -0.54 -3.03 16 21 O -0.17 -2.42 18.44 -29.46 -0.54 -2.97 16 22 C -0.02 -0.15 9.55 -39.61 -0.38 -0.53 16 23 C -0.16 -1.57 9.99 -39.43 -0.39 -1.96 16 24 C 0.12 2.27 6.85 -2.54 -0.02 2.25 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 27 H 0.05 1.30 7.51 -51.92 -0.39 0.91 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.16 1.80 5.65 -52.48 -0.30 1.50 16 31 H 0.15 1.51 7.60 -52.49 -0.40 1.11 16 32 H 0.16 1.23 7.61 -52.48 -0.40 0.83 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.80 7.79 -51.93 -0.40 0.40 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -29.14 303.31 -8.25 -37.39 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.83 Total: -1.26 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.83 Total: -7.36 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.15 Total: -39.24 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.28 Total: -10.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.14 -8.25 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227523580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.703 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds