Wall clock time and date at job start Mon Mar 30 2020 23:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47167 * 239.99582 * 3 2 1 5 5 H 1.48497 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47138 * 119.99798 * 3 2 1 7 7 C 1.38806 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00302 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64959 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.27383 * 178.95976 * 10 9 7 12 12 C 1.55153 * 102.94193 * 337.80628 * 11 10 9 13 13 H 1.09001 * 111.00591 * 277.38644 * 12 11 10 14 14 O 1.42903 * 111.00610 * 153.57796 * 12 11 10 15 15 C 1.35904 * 116.99998 * 156.29031 * 14 12 11 16 16 C 1.38728 * 120.05651 * 5.66171 * 15 14 12 17 17 C 1.38145 * 119.94571 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.05022 * 0.02562 * 17 16 15 19 19 N 1.48010 * 119.93898 * 179.71848 * 18 17 16 20 20 O 1.21799 * 120.00098 * 0.02562 * 19 18 17 21 21 O 1.21803 * 119.99557 * 179.97438 * 19 18 17 22 22 C 1.38260 * 120.11614 * 359.97438 * 18 17 16 23 23 C 1.38142 * 120.05667 * 0.02562 * 22 18 17 24 24 C 1.47432 * 125.65264 * 179.97438 * 9 7 2 25 25 H 0.97000 * 120.00245 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.88541 * 59.53872 * 10 9 7 27 27 H 1.09009 * 109.87846 * 298.37624 * 10 9 7 28 28 H 1.09003 * 110.71880 * 219.44093 * 11 10 9 29 29 H 1.08998 * 110.87666 * 96.23744 * 11 10 9 30 30 H 1.08003 * 120.02853 * 359.96145 * 16 15 14 31 31 H 1.08000 * 119.97564 * 180.02562 * 17 16 15 32 32 H 1.08004 * 119.97224 * 179.97438 * 22 18 17 33 33 H 1.08001 * 120.03003 * 180.02562 * 23 22 18 34 34 H 1.08998 * 110.36257 * 85.26519 * 24 9 7 35 35 H 1.09002 * 110.36252 * 322.95287 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0028 11 6 -0.4483 -4.0441 -0.0230 12 6 0.8517 -4.6563 -0.6084 13 1 0.8555 -4.5977 -1.6969 14 8 1.0249 -6.0055 -0.1704 15 6 1.7943 -6.8125 -0.9475 16 6 2.4656 -6.2882 -2.0425 17 6 3.2475 -7.1104 -2.8305 18 6 3.3607 -8.4551 -2.5290 19 7 4.1940 -9.3351 -3.3786 20 8 4.7797 -8.8745 -4.3421 21 8 4.2949 -10.5196 -3.1136 22 6 2.6926 -8.9801 -1.4383 23 6 1.9095 -8.1620 -0.6471 24 6 1.9336 -3.7311 0.0017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5582 -2.0526 -0.8806 27 1 -0.5535 -2.0841 0.9049 28 1 -1.2988 -4.2518 -0.6723 29 1 -0.6323 -4.4201 0.9834 30 1 2.3770 -5.2381 -2.2788 31 1 3.7707 -6.7027 -3.6828 32 1 2.7823 -10.0308 -1.2051 33 1 1.3882 -8.5725 0.2050 34 1 2.1676 -4.0414 1.0201 35 1 2.8326 -3.7407 -0.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227523580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:48 Heat of formation + Delta-G solvation = -0.332770 kcal Electronic energy + Delta-G solvation = -20881.502137 eV Core-core repulsion = 17462.610360 eV Total energy + Delta-G solvation = -3418.891777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.21479 -41.61755 -39.47023 -37.87742 -37.64183 -34.38982 -32.58004 -32.22518 -31.11906 -29.25215 -27.32271 -26.43753 -24.47757 -23.44394 -22.16925 -21.81074 -20.39176 -19.72298 -19.50872 -19.00055 -18.57449 -17.14878 -16.79022 -16.66137 -16.05261 -15.73479 -15.65095 -14.91264 -14.61918 -14.42646 -14.10767 -14.08942 -13.78535 -13.33937 -12.95853 -12.74610 -12.69513 -12.38095 -12.28776 -12.27803 -12.17964 -12.11111 -11.96624 -11.70122 -11.56392 -10.74646 -10.51623 -9.83157 -8.99309 -7.90512 -5.27697 -1.18099 -0.10404 0.31491 0.42207 1.46588 1.48591 1.54949 1.78206 2.22556 2.47334 3.28732 3.31606 3.41763 3.52244 3.55056 3.71786 3.82530 3.89362 3.95601 4.20335 4.36706 4.55155 4.61800 4.64073 4.70110 4.77072 4.87871 4.91916 5.01731 5.10165 5.36379 5.40141 5.56314 5.68684 6.04190 6.15090 6.52972 7.03813 7.68767 8.30614 9.19352 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.003558 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.563194 B = 7867.473611 C = 8570.095808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.183 3.817 11 C -0.122 4.122 12 C 0.077 3.923 13 H 0.102 0.898 14 O -0.290 6.290 15 C 0.184 3.816 16 C -0.211 4.211 17 C -0.010 4.010 18 C -0.105 4.105 19 N 0.040 4.960 20 O -0.200 6.200 21 O -0.174 6.174 22 C -0.007 4.007 23 C -0.145 4.145 24 C 0.116 3.884 25 H 0.249 0.751 26 H 0.024 0.976 27 H 0.015 0.985 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.181 0.819 34 H 0.029 0.971 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -16.369 -2.312 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.058 3.942 11 C -0.160 4.160 12 C 0.020 3.980 13 H 0.120 0.880 14 O -0.201 6.201 15 C 0.136 3.864 16 C -0.230 4.230 17 C -0.029 4.029 18 C -0.190 4.190 19 N 0.552 4.448 20 O -0.408 6.408 21 O -0.390 6.390 22 C -0.026 4.026 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.197 0.803 33 H 0.198 0.802 34 H 0.047 0.953 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.184 -15.753 -1.754 15.894 hybrid contribution 0.650 1.211 -0.343 1.416 sum 1.834 -14.542 -2.096 14.806 Atomic orbital electron populations 1.70124 1.06211 1.25657 1.57639 1.25623 0.96613 1.00947 1.02075 0.85167 0.77201 0.78775 0.78262 1.20133 1.21995 1.20449 1.19387 0.91070 0.83388 1.43932 0.89842 1.44589 1.02509 1.00642 1.87388 1.20980 0.83712 0.90623 0.98861 1.22877 0.95816 0.94796 1.02510 1.23746 0.97261 0.77280 0.99685 0.88040 1.86170 1.63596 1.22525 1.47779 1.19748 0.87151 0.91309 0.88218 1.21488 1.01923 1.02265 0.97366 1.20915 0.93730 0.89767 0.98472 1.21142 1.06675 0.91570 0.99579 1.43793 0.99257 1.01433 1.00334 1.94532 1.47162 1.79034 1.20096 1.94490 1.68201 0.99932 1.76354 1.21060 0.89934 1.02614 0.88980 1.20707 1.02937 0.89313 1.03446 1.22050 0.95284 0.85238 0.98420 0.94138 0.95770 0.96641 0.88438 0.89946 0.82597 0.82048 0.80276 0.80201 0.95340 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.34 10.31 21.65 0.22 -54.11 16 2 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 3 Si 0.98 43.85 29.55 68.60 2.03 45.88 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.25 -13.27 10.28 84.03 0.86 -12.41 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -29.86 3.40 -692.03 -2.35 -32.21 16 10 C 0.18 8.29 5.37 86.73 0.47 8.76 16 11 C -0.12 -3.89 6.69 31.78 0.21 -3.68 16 12 C 0.08 2.23 2.81 31.98 0.09 2.32 16 13 H 0.10 2.70 6.24 -2.39 -0.01 2.68 16 14 O -0.29 -7.15 9.95 -92.47 -0.92 -8.07 16 15 C 0.18 3.81 6.68 22.51 0.15 3.96 16 16 C -0.21 -4.35 8.94 22.36 0.20 -4.15 16 17 C -0.01 -0.20 9.55 22.25 0.21 0.02 16 18 C -0.11 -2.23 6.85 36.39 0.25 -1.98 16 19 N 0.04 1.01 4.45 -46.44 -0.21 0.81 16 20 O -0.20 -5.63 18.44 18.89 0.35 -5.29 16 21 O -0.17 -4.54 18.44 18.88 0.35 -4.19 16 22 C -0.01 -0.11 9.55 22.25 0.21 0.10 16 23 C -0.15 -2.30 9.99 22.37 0.22 -2.08 16 24 C 0.12 4.25 6.85 86.84 0.60 4.85 16 25 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 26 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 27 H 0.02 0.80 7.51 -2.38 -0.02 0.78 16 28 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.16 3.26 5.65 -2.91 -0.02 3.24 16 31 H 0.16 2.95 7.60 -2.91 -0.02 2.93 16 32 H 0.18 2.10 7.61 -2.91 -0.02 2.07 16 33 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.86 7.79 -2.39 -0.02 1.84 16 Total: -1.00 -63.73 303.31 4.53 -59.20 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.12 Total: 5.01 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 3.94 Total: -7.03 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.33 Total: -85.51 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.22 Total: -17.55 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.73 4.53 -59.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227523580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.865 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds