Wall clock time and date at job start Mon Mar 30 2020 23:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99621 * 2 1 4 4 H 1.48492 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47363 * 300.00447 * 3 2 1 6 6 H 1.48502 * 109.46829 * 60.00078 * 3 2 1 7 7 C 1.37873 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00385 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99871 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40261 * 66.46267 * 9 7 2 11 11 O 1.42108 * 106.40393 * 293.54462 * 9 7 2 12 12 N 1.65595 * 107.21916 * 180.02562 * 9 7 2 13 13 C 1.44580 * 118.64539 * 89.99614 * 12 9 7 14 14 C 1.54870 * 109.59873 * 89.27840 * 13 12 9 15 15 C 1.47087 * 110.32459 * 71.26606 * 14 13 12 16 16 C 1.52577 * 114.32794 * 297.20008 * 15 14 13 17 17 O 1.42902 * 109.48394 * 325.04934 * 16 15 14 18 18 C 1.52999 * 109.49149 * 204.97718 * 16 15 14 19 19 N 1.46898 * 109.46999 * 181.03482 * 18 16 15 20 20 C 1.50884 * 109.35751 * 85.01045 * 16 15 14 21 21 C 1.47607 * 118.64249 * 270.00037 * 12 9 7 22 22 H 0.96995 * 120.00511 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.45195 * 329.23799 * 13 12 9 24 24 H 1.09004 * 109.44745 * 209.31245 * 13 12 9 25 25 H 1.08995 * 109.32518 * 191.53255 * 14 13 12 26 26 H 1.09007 * 109.32648 * 311.00783 * 14 13 12 27 27 H 1.09002 * 108.51478 * 58.45124 * 15 14 13 28 28 H 1.09001 * 108.51826 * 175.94802 * 15 14 13 29 29 H 0.96705 * 113.99716 * 299.98670 * 17 16 15 30 30 H 1.09000 * 109.47021 * 301.03510 * 18 16 15 31 31 H 1.09007 * 109.46968 * 61.03567 * 18 16 15 32 32 H 1.00903 * 110.99793 * 184.00198 * 19 18 16 33 33 H 1.00897 * 110.99906 * 307.95050 * 19 18 16 34 34 H 1.08995 * 109.37069 * 28.30771 * 20 16 15 35 35 H 1.08999 * 109.36407 * 148.05252 * 20 16 15 36 36 H 1.09001 * 108.95022 * 101.44390 * 21 12 9 37 37 H 1.09002 * 108.87718 * 342.76708 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4512 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2485 -3.9353 -0.0005 13 6 2.7194 -4.4439 1.2683 14 6 1.8069 -5.6057 1.7331 15 6 2.0263 -6.7944 0.8950 16 6 1.6709 -6.6004 -0.5761 17 8 0.5416 -5.7313 -0.6831 18 6 1.3345 -7.9550 -1.2029 19 7 1.0165 -7.7710 -2.6252 20 6 2.8465 -5.9896 -1.2983 21 6 2.7291 -4.4546 -1.2960 22 1 -0.4851 0.8400 0.0004 23 1 2.6969 -3.6457 2.0102 24 1 3.7411 -4.8071 1.1571 25 1 2.0335 -5.8493 2.7711 26 1 0.7639 -5.2980 1.6568 27 1 3.0769 -7.0766 0.9628 28 1 1.4254 -7.6130 1.2911 29 1 -0.2518 -6.0610 -0.2392 30 1 2.1903 -8.6230 -1.1054 31 1 0.4750 -8.3886 -0.6915 32 1 0.7277 -8.6411 -3.0466 33 1 0.3133 -7.0582 -2.7492 34 1 3.7697 -6.2823 -0.7983 35 1 2.8638 -6.3474 -2.3277 36 1 3.7079 -4.0245 -1.5086 37 1 2.0325 -4.1517 -2.0777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238936254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:21 Heat of formation + Delta-G solvation = -135.145391 kcal Electronic energy + Delta-G solvation = -22021.118607 eV Core-core repulsion = 18731.824867 eV Total energy + Delta-G solvation = -3289.293740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.54642 -35.58797 -35.01014 -33.69623 -33.64377 -32.95225 -32.47871 -31.05789 -26.48575 -25.95355 -25.11650 -22.64298 -20.56747 -19.79429 -18.55135 -16.89599 -16.46894 -16.08257 -15.96778 -15.71651 -14.94553 -14.43964 -14.27144 -13.90370 -13.63273 -13.40287 -13.15405 -12.92197 -12.54582 -12.04586 -11.86039 -11.71512 -11.54328 -11.16398 -11.07893 -10.95103 -10.59014 -10.56101 -10.49891 -10.09314 -9.98669 -9.76628 -9.73483 -9.56517 -9.15304 -8.69141 -8.65107 -7.85138 -6.57987 -5.18872 2.55616 3.11076 3.19358 3.27450 4.15882 4.30830 4.65632 4.74688 4.76496 4.89214 5.07340 5.13816 5.28386 5.50209 5.54058 5.65574 5.81105 5.91125 5.95557 6.05702 6.18849 6.22055 6.25363 6.35006 6.38703 6.56607 6.66984 6.70130 6.90742 7.08574 7.11102 7.43774 7.45286 7.97548 8.03744 8.10330 9.01055 10.34567 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.006408 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.940454 B = 4368.426643 C = 4521.792336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.133 3.867 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.272 1.272 7 C -1.030 5.030 8 H 0.098 0.902 9 S 2.729 3.271 10 O -0.999 6.999 11 O -1.011 7.011 12 N -0.992 5.992 13 C 0.138 3.862 14 C -0.138 4.138 15 C -0.137 4.137 16 C 0.142 3.858 17 O -0.533 6.533 18 C 0.039 3.961 19 N -0.845 5.845 20 C -0.114 4.114 21 C 0.136 3.864 22 H 0.288 0.712 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.364 0.636 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.335 0.665 33 H 0.353 0.647 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -13.951 -0.195 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.084 4.084 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.197 1.197 7 C -1.162 5.162 8 H 0.117 0.883 9 S 2.829 3.171 10 O -0.989 6.989 11 O -1.001 7.001 12 N -0.826 5.826 13 C 0.010 3.990 14 C -0.177 4.177 15 C -0.176 4.176 16 C 0.100 3.900 17 O -0.337 6.337 18 C -0.092 4.092 19 N -0.376 5.376 20 C -0.153 4.153 21 C 0.011 3.989 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.210 0.790 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.003 -13.445 -0.616 14.359 hybrid contribution -0.284 0.391 0.731 0.876 sum 4.719 -13.054 0.115 13.881 Atomic orbital electron populations 1.69915 1.06731 1.30339 1.40799 1.24734 0.94404 1.00678 0.88591 0.86218 0.80560 0.80780 0.78499 1.18676 1.19632 1.19672 1.30908 1.06221 1.12867 1.66216 0.88327 1.00149 0.72023 0.72341 0.72628 1.93316 1.72605 1.87412 1.45584 1.93317 1.72918 1.87819 1.46093 1.57318 1.63015 1.53755 1.08532 1.20886 0.96372 0.96137 0.85608 1.21201 1.02879 0.95638 0.98010 1.21113 1.01915 0.98836 0.95694 1.20645 0.88071 0.88029 0.93224 1.86858 1.20923 1.47535 1.78346 1.22491 0.99762 0.97722 0.89238 1.58613 1.52246 1.12828 1.13925 1.21751 0.95182 0.96408 1.01919 1.21190 0.99146 0.92546 0.86060 0.90163 0.90660 0.92215 0.91760 0.90462 0.91825 0.92991 0.79045 0.90745 0.95798 0.85295 0.83292 0.91804 0.88993 0.93680 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.72 13.19 55.43 0.73 -24.99 16 2 C 0.13 3.85 5.46 -17.82 -0.10 3.75 16 3 Si 0.92 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -1.03 -29.60 9.75 30.60 0.30 -29.31 16 8 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 9 S 2.73 74.19 4.32 -107.50 -0.46 73.72 16 10 O -1.00 -29.70 16.18 -57.32 -0.93 -30.63 16 11 O -1.01 -29.65 16.25 -57.17 -0.93 -30.58 16 12 N -0.99 -20.55 1.92 -113.30 -0.22 -20.77 16 13 C 0.14 2.43 5.24 -4.08 -0.02 2.41 16 14 C -0.14 -2.13 5.44 -28.58 -0.16 -2.29 16 15 C -0.14 -1.73 4.52 -29.79 -0.13 -1.87 16 16 C 0.14 1.92 0.72 -91.90 -0.07 1.85 16 17 O -0.53 -8.90 8.29 -35.23 -0.29 -9.19 16 18 C 0.04 0.43 5.74 -3.83 -0.02 0.41 16 19 N -0.85 -9.33 8.53 -10.37 -0.09 -9.42 16 20 C -0.11 -1.63 5.11 -27.30 -0.14 -1.77 16 21 C 0.14 2.50 5.68 -2.94 -0.02 2.48 16 22 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16 23 H 0.08 1.43 7.67 -51.93 -0.40 1.03 16 24 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.40 6.66 -51.93 -0.35 1.05 16 27 H 0.06 0.72 7.36 -51.93 -0.38 0.34 16 28 H 0.05 0.57 7.82 -51.93 -0.41 0.16 16 29 H 0.36 5.11 8.89 45.56 0.40 5.51 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.24 8.11 -51.93 -0.42 -0.18 16 32 H 0.34 2.93 9.08 -39.29 -0.36 2.57 16 33 H 0.35 4.32 8.32 -39.29 -0.33 3.99 16 34 H 0.06 0.81 7.32 -51.93 -0.38 0.43 16 35 H 0.09 1.29 6.89 -51.93 -0.36 0.93 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.97 6.62 -51.93 -0.34 1.63 16 LS Contribution 300.56 15.07 4.53 4.53 Total: -1.00 -35.88 300.56 -7.58 -43.46 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.55 Total: 11.95 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -0.35 Total: -24.32 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.43 Total: -55.17 kcal Atomic # 8 Polarization: -68.25 SS G_CDS: -2.15 Total: -70.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 74.19 SS G_CDS: -0.46 Total: 73.72 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.88 -7.58 -43.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238936254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.687 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds