Wall clock time and date at job start Mon Mar 30 2020 23:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99621 * 2 1 4 4 H 1.48492 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47363 * 300.00447 * 3 2 1 6 6 H 1.48502 * 109.46829 * 60.00078 * 3 2 1 7 7 C 1.37873 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00385 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99871 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40261 * 66.46267 * 9 7 2 11 11 O 1.42108 * 106.40393 * 293.54462 * 9 7 2 12 12 N 1.65595 * 107.21916 * 180.02562 * 9 7 2 13 13 C 1.44580 * 118.64539 * 89.99614 * 12 9 7 14 14 C 1.54870 * 109.59873 * 89.27840 * 13 12 9 15 15 C 1.47087 * 110.32459 * 71.26606 * 14 13 12 16 16 C 1.52577 * 114.32794 * 297.20008 * 15 14 13 17 17 O 1.42902 * 109.48394 * 325.04934 * 16 15 14 18 18 C 1.52999 * 109.49149 * 204.97718 * 16 15 14 19 19 N 1.46898 * 109.46999 * 181.03482 * 18 16 15 20 20 C 1.50884 * 109.35751 * 85.01045 * 16 15 14 21 21 C 1.47607 * 118.64249 * 270.00037 * 12 9 7 22 22 H 0.96995 * 120.00511 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.45195 * 329.23799 * 13 12 9 24 24 H 1.09004 * 109.44745 * 209.31245 * 13 12 9 25 25 H 1.08995 * 109.32518 * 191.53255 * 14 13 12 26 26 H 1.09007 * 109.32648 * 311.00783 * 14 13 12 27 27 H 1.09002 * 108.51478 * 58.45124 * 15 14 13 28 28 H 1.09001 * 108.51826 * 175.94802 * 15 14 13 29 29 H 0.96705 * 113.99716 * 299.98670 * 17 16 15 30 30 H 1.09000 * 109.47021 * 301.03510 * 18 16 15 31 31 H 1.09007 * 109.46968 * 61.03567 * 18 16 15 32 32 H 1.00903 * 110.99793 * 184.00198 * 19 18 16 33 33 H 1.00897 * 110.99906 * 307.95050 * 19 18 16 34 34 H 1.08995 * 109.37069 * 28.30771 * 20 16 15 35 35 H 1.08999 * 109.36407 * 148.05252 * 20 16 15 36 36 H 1.09001 * 108.95022 * 101.44390 * 21 12 9 37 37 H 1.09002 * 108.87718 * 342.76708 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4512 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2485 -3.9353 -0.0005 13 6 2.7194 -4.4439 1.2683 14 6 1.8069 -5.6057 1.7331 15 6 2.0263 -6.7944 0.8950 16 6 1.6709 -6.6004 -0.5761 17 8 0.5416 -5.7313 -0.6831 18 6 1.3345 -7.9550 -1.2029 19 7 1.0165 -7.7710 -2.6252 20 6 2.8465 -5.9896 -1.2983 21 6 2.7291 -4.4546 -1.2960 22 1 -0.4851 0.8400 0.0004 23 1 2.6969 -3.6457 2.0102 24 1 3.7411 -4.8071 1.1571 25 1 2.0335 -5.8493 2.7711 26 1 0.7639 -5.2980 1.6568 27 1 3.0769 -7.0766 0.9628 28 1 1.4254 -7.6130 1.2911 29 1 -0.2518 -6.0610 -0.2392 30 1 2.1903 -8.6230 -1.1054 31 1 0.4750 -8.3886 -0.6915 32 1 0.7277 -8.6411 -3.0466 33 1 0.3133 -7.0582 -2.7492 34 1 3.7697 -6.2823 -0.7983 35 1 2.8638 -6.3474 -2.3277 36 1 3.7079 -4.0245 -1.5086 37 1 2.0325 -4.1517 -2.0777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238936254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:20 Heat of formation + Delta-G solvation = -167.069586 kcal Electronic energy + Delta-G solvation = -22022.502944 eV Core-core repulsion = 18731.824867 eV Total energy + Delta-G solvation = -3290.678077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69200 -37.29980 -36.84868 -35.89642 -35.12677 -34.69182 -33.77646 -32.25071 -28.23625 -27.60023 -26.39744 -23.73877 -21.97023 -20.98957 -20.57820 -18.68112 -18.18026 -17.49677 -17.20935 -17.06891 -16.79946 -15.96196 -15.59813 -15.28199 -15.20337 -14.90544 -14.38497 -14.22718 -13.94440 -13.71259 -13.41067 -13.13418 -13.03088 -12.99601 -12.79611 -12.40366 -12.29390 -12.26323 -12.07177 -11.85550 -11.68311 -11.39690 -11.25301 -11.13068 -10.81557 -10.66100 -9.52329 -9.45974 -8.70597 -7.45266 0.54417 1.30763 1.31612 1.49257 2.21973 2.58632 3.00467 3.32033 3.74491 3.91929 3.92718 4.04039 4.09663 4.24111 4.26818 4.37071 4.57443 4.61317 4.73465 4.79040 4.84592 4.95462 4.97446 5.06217 5.15882 5.17920 5.25313 5.32886 5.46142 5.55945 5.59182 5.92966 6.26666 6.35294 6.64608 6.80635 6.96775 8.22734 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.006408 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.940454 B = 4368.426643 C = 4521.792336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.986 3.014 4 H -0.249 1.249 5 H -0.258 1.258 6 H -0.256 1.256 7 C -1.059 5.059 8 H 0.110 0.890 9 S 2.735 3.265 10 O -1.037 7.037 11 O -1.044 7.044 12 N -0.981 5.981 13 C 0.124 3.876 14 C -0.134 4.134 15 C -0.135 4.135 16 C 0.133 3.867 17 O -0.565 6.565 18 C 0.047 3.953 19 N -0.853 5.853 20 C -0.106 4.106 21 C 0.130 3.870 22 H 0.297 0.703 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.369 0.631 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.348 0.652 33 H 0.343 0.657 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -15.219 0.160 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.804 3.196 4 H -0.172 1.172 5 H -0.182 1.182 6 H -0.181 1.181 7 C -1.190 5.190 8 H 0.129 0.871 9 S 2.835 3.165 10 O -1.027 7.027 11 O -1.034 7.034 12 N -0.819 5.819 13 C -0.003 4.003 14 C -0.173 4.173 15 C -0.172 4.172 16 C 0.092 3.908 17 O -0.370 6.370 18 C -0.084 4.084 19 N -0.384 5.384 20 C -0.145 4.145 21 C 0.005 3.995 22 H 0.107 0.893 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.216 0.784 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.353 -14.747 -0.258 16.480 hybrid contribution -0.997 0.708 0.615 1.369 sum 6.356 -14.038 0.357 15.414 Atomic orbital electron populations 1.70005 1.08745 1.32054 1.41991 1.26030 0.95388 1.05397 0.87610 0.85172 0.79522 0.75336 0.79569 1.17157 1.18170 1.18053 1.31346 1.07077 1.14317 1.66282 0.87133 0.99600 0.72630 0.72964 0.71272 1.93254 1.74366 1.88146 1.46913 1.93256 1.74557 1.88492 1.47145 1.56765 1.62015 1.52436 1.10636 1.21242 0.99007 0.96465 0.83545 1.21165 1.00150 0.95903 1.00113 1.21061 1.03949 0.97909 0.94329 1.20896 0.86836 0.88862 0.94215 1.86841 1.22140 1.49273 1.78764 1.22411 1.00904 0.96204 0.88885 1.58620 1.52046 1.13377 1.14385 1.21770 0.96959 0.92851 1.02899 1.21370 0.98577 0.95808 0.83768 0.89277 0.92772 0.88238 0.89411 0.93958 0.89253 0.90744 0.78408 0.88897 0.94720 0.83830 0.84383 0.88919 0.88594 0.92113 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.96 13.19 21.45 0.28 -55.68 16 2 C 0.07 3.97 5.46 84.65 0.46 4.43 16 3 Si 0.99 43.23 29.54 68.60 2.03 45.26 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -1.06 -62.04 9.75 67.73 0.66 -61.38 16 8 H 0.11 5.95 7.81 -2.91 -0.02 5.93 16 9 S 2.74 154.10 4.32 -56.49 -0.24 153.86 16 10 O -1.04 -64.71 16.18 -127.86 -2.07 -66.78 16 11 O -1.04 -63.97 16.25 -128.00 -2.08 -66.05 16 12 N -0.98 -40.70 1.92 -512.36 -0.98 -41.69 16 13 C 0.12 4.23 5.24 87.38 0.46 4.68 16 14 C -0.13 -3.92 5.44 29.39 0.16 -3.76 16 15 C -0.13 -2.93 4.52 28.62 0.13 -2.80 16 16 C 0.13 3.30 0.72 -11.62 -0.01 3.30 16 17 O -0.56 -19.08 8.29 -148.98 -1.24 -20.32 16 18 C 0.05 0.89 5.74 86.30 0.50 1.39 16 19 N -0.85 -17.37 8.53 -186.72 -1.59 -18.96 16 20 C -0.11 -2.78 5.11 30.23 0.15 -2.63 16 21 C 0.13 4.69 5.68 86.49 0.49 5.19 16 22 H 0.30 16.59 8.31 -92.71 -0.77 15.82 16 23 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 24 H 0.10 2.60 8.07 -2.39 -0.02 2.58 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.04 1.54 6.66 -2.38 -0.02 1.52 16 27 H 0.09 1.54 7.36 -2.39 -0.02 1.53 16 28 H 0.07 1.33 7.82 -2.39 -0.02 1.31 16 29 H 0.37 10.77 8.89 -74.05 -0.66 10.11 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 0.59 8.11 -2.38 -0.02 0.58 16 32 H 0.35 5.41 9.08 -89.69 -0.81 4.59 16 33 H 0.34 8.29 8.32 -89.70 -0.75 7.54 16 34 H 0.09 1.91 7.32 -2.39 -0.02 1.89 16 35 H 0.10 2.47 6.89 -2.39 -0.02 2.45 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 2.59 6.62 -2.39 -0.02 2.57 16 Total: -1.00 -81.21 300.56 -4.00 -85.22 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.11 Total: 36.74 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 3.00 Total: -51.60 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -2.29 Total: -116.33 kcal Atomic # 8 Polarization: -147.77 SS G_CDS: -5.38 Total: -153.15 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 154.10 SS G_CDS: -0.24 Total: 153.86 kcal Total: -81.21 -4.00 -85.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238936254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.853 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds