Wall clock time and date at job start Mon Mar 30 2020 23:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99963 * 2 1 4 4 H 1.48500 * 109.47004 * 270.00007 * 3 2 1 5 5 H 1.48503 * 109.47250 * 30.00093 * 3 2 1 6 6 H 1.48498 * 109.47109 * 149.99983 * 3 2 1 7 7 C 1.37872 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99975 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00291 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40002 * 68.93613 * 9 7 2 11 11 O 1.42097 * 106.40306 * 296.01971 * 9 7 2 12 12 N 1.65593 * 107.22006 * 182.47591 * 9 7 2 13 13 C 1.44575 * 118.64611 * 263.94367 * 12 9 7 14 14 C 1.54863 * 109.58287 * 270.73305 * 13 12 9 15 15 C 1.47044 * 110.32019 * 288.67533 * 14 13 12 16 16 C 1.52572 * 114.29141 * 62.88175 * 15 14 13 17 17 O 1.42900 * 109.48952 * 34.90160 * 16 15 14 18 18 C 1.53002 * 109.49255 * 154.97448 * 16 15 14 19 19 N 1.46899 * 109.47056 * 179.54452 * 18 16 15 20 20 C 1.50881 * 109.34990 * 274.93839 * 16 15 14 21 21 C 1.47605 * 118.64211 * 83.97002 * 12 9 7 22 22 H 0.97009 * 120.00113 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.44571 * 30.76078 * 13 12 9 24 24 H 1.09006 * 109.45144 * 150.70071 * 13 12 9 25 25 H 1.08996 * 109.33246 * 48.99396 * 14 13 12 26 26 H 1.09005 * 109.32748 * 168.46930 * 14 13 12 27 27 H 1.08999 * 108.55969 * 301.62245 * 15 14 13 28 28 H 1.09000 * 108.38455 * 184.01427 * 15 14 13 29 29 H 0.96697 * 114.00410 * 58.57382 * 17 16 15 30 30 H 1.09004 * 109.46629 * 299.54066 * 18 16 15 31 31 H 1.08998 * 109.46675 * 59.53869 * 18 16 15 32 32 H 1.00897 * 111.00254 * 64.76594 * 19 18 16 33 33 H 1.00900 * 110.99819 * 188.72186 * 19 18 16 34 34 H 1.08998 * 109.36750 * 331.69872 * 20 16 15 35 35 H 1.08996 * 109.26149 * 212.01112 * 20 16 15 36 36 H 1.09005 * 108.94929 * 258.55338 * 21 12 9 37 37 H 1.09004 * 108.94844 * 17.17195 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4981 -2.8222 -1.2725 11 8 0.4055 -2.7688 1.2247 12 7 2.2469 -3.9346 0.0671 13 6 2.6656 -4.5609 -1.1669 14 6 1.7343 -5.7569 -1.4840 15 6 1.9879 -6.8634 -0.5494 16 6 1.6919 -6.5325 0.9102 17 8 0.5682 -5.6526 0.9812 18 6 1.3804 -7.8217 1.6730 19 7 1.1061 -7.5037 3.0807 20 6 2.8958 -5.8622 1.5250 21 6 2.7791 -4.3336 1.3848 22 1 -0.4851 0.8401 0.0004 23 1 2.6133 -3.8349 -1.9783 24 1 3.6909 -4.9166 -1.0637 25 1 0.6956 -5.4389 -1.3946 26 1 1.9183 -6.0970 -2.5032 27 1 3.0349 -7.1548 -0.6327 28 1 1.3694 -7.7111 -0.8444 29 1 -0.2370 -6.0098 0.5822 30 1 0.5070 -8.3025 1.2323 31 1 2.2352 -8.4952 1.6124 32 1 0.2715 -6.9436 3.1689 33 1 1.0376 -8.3443 3.6346 34 1 3.7980 -6.2039 1.0177 35 1 2.9534 -6.1250 2.5812 36 1 3.7658 -3.8897 1.5172 37 1 2.1159 -3.9564 2.1633 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238936262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:23 Heat of formation + Delta-G solvation = -134.015705 kcal Electronic energy + Delta-G solvation = -22020.394795 eV Core-core repulsion = 18731.150043 eV Total energy + Delta-G solvation = -3289.244753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.49960 -35.55555 -34.97877 -33.67814 -33.62352 -32.93494 -32.47112 -31.04914 -26.46173 -25.94983 -25.10106 -22.61747 -20.55688 -19.74031 -18.53693 -16.87160 -16.41931 -16.06058 -15.92646 -15.71174 -14.98248 -14.43531 -14.35587 -13.89056 -13.60550 -13.41306 -13.08652 -12.88641 -12.50267 -11.97563 -11.79698 -11.68074 -11.53040 -11.14103 -11.07372 -10.91936 -10.57639 -10.54156 -10.49496 -10.09218 -9.96153 -9.79097 -9.69937 -9.53671 -9.13108 -8.67509 -8.61908 -7.83471 -6.56496 -5.17420 2.57326 3.13284 3.19802 3.27323 4.16972 4.31799 4.67768 4.76319 4.79452 4.93905 5.08868 5.16363 5.28986 5.49460 5.52953 5.67510 5.82520 5.91837 5.97227 6.07951 6.18619 6.23115 6.26480 6.36823 6.41713 6.58785 6.68151 6.70784 6.91419 7.10482 7.11970 7.45031 7.45755 7.99406 8.10386 8.11221 9.02273 10.36005 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.006462 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.956045 B = 4331.806489 C = 4499.452648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.133 3.867 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.030 5.030 8 H 0.098 0.902 9 S 2.728 3.272 10 O -1.014 7.014 11 O -0.994 6.994 12 N -0.992 5.992 13 C 0.136 3.864 14 C -0.137 4.137 15 C -0.139 4.139 16 C 0.143 3.857 17 O -0.528 6.528 18 C 0.040 3.960 19 N -0.843 5.843 20 C -0.112 4.112 21 C 0.139 3.861 22 H 0.288 0.712 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.361 0.639 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.351 0.649 33 H 0.335 0.665 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -14.193 1.278 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.084 4.084 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.162 5.162 8 H 0.116 0.884 9 S 2.827 3.173 10 O -1.005 7.005 11 O -0.984 6.984 12 N -0.826 5.826 13 C 0.009 3.991 14 C -0.176 4.176 15 C -0.177 4.177 16 C 0.102 3.898 17 O -0.331 6.331 18 C -0.092 4.092 19 N -0.373 5.373 20 C -0.151 4.151 21 C 0.013 3.987 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.207 0.793 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.052 -13.502 1.542 14.499 hybrid contribution -0.213 0.131 -0.541 0.596 sum 4.838 -13.371 1.002 14.255 Atomic orbital electron populations 1.69911 1.06725 1.30405 1.40728 1.24725 0.94402 1.00639 0.88611 0.86255 0.80293 0.80456 0.79078 1.19284 1.20011 1.18720 1.30880 1.06168 1.12892 1.66290 0.88398 1.00178 0.72070 0.72374 0.72631 1.93319 1.74708 1.87826 1.44603 1.93326 1.70635 1.87350 1.47117 1.57326 1.63038 1.53051 1.09205 1.20897 0.96689 0.94693 0.86863 1.21179 1.02490 0.96180 0.97771 1.21129 1.01949 0.98851 0.95768 1.20621 0.88400 0.88343 0.92465 1.86907 1.19937 1.43935 1.82338 1.22479 0.99746 0.97338 0.89632 1.58489 1.46243 1.23830 1.08720 1.21723 0.94847 0.96144 1.02388 1.21151 0.98405 0.93727 0.85390 0.90129 0.90527 0.92206 0.90810 0.91737 0.91820 0.93032 0.79319 0.95794 0.90823 0.83525 0.85328 0.92001 0.89014 0.93764 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.79 13.18 55.43 0.73 -25.06 16 2 C 0.13 3.87 5.46 -17.82 -0.10 3.78 16 3 Si 0.92 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 7 C -1.03 -29.72 9.74 30.60 0.30 -29.42 16 8 H 0.10 2.62 7.81 -52.48 -0.41 2.21 16 9 S 2.73 74.45 4.40 -107.50 -0.47 73.98 16 10 O -1.01 -29.89 16.34 -57.17 -0.93 -30.83 16 11 O -0.99 -29.63 15.95 -60.28 -0.96 -30.59 16 12 N -0.99 -20.67 1.92 -113.30 -0.22 -20.89 16 13 C 0.14 2.42 5.24 -4.09 -0.02 2.40 16 14 C -0.14 -2.11 5.46 -28.61 -0.16 -2.27 16 15 C -0.14 -1.75 4.51 -29.81 -0.13 -1.89 16 16 C 0.14 1.96 0.72 -91.90 -0.07 1.89 16 17 O -0.53 -8.98 8.21 -37.63 -0.31 -9.29 16 18 C 0.04 0.43 5.70 -3.82 -0.02 0.41 16 19 N -0.84 -9.28 8.47 -10.37 -0.09 -9.37 16 20 C -0.11 -1.63 5.12 -27.30 -0.14 -1.77 16 21 C 0.14 2.58 5.66 -2.94 -0.02 2.56 16 22 H 0.29 7.89 8.31 -40.82 -0.34 7.55 16 23 H 0.08 1.46 7.51 -51.93 -0.39 1.07 16 24 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 25 H 0.07 1.33 6.89 -51.93 -0.36 0.97 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.72 7.36 -51.93 -0.38 0.34 16 28 H 0.05 0.56 7.81 -51.93 -0.41 0.16 16 29 H 0.36 5.19 8.82 45.56 0.40 5.60 16 30 H 0.02 0.24 8.10 -51.93 -0.42 -0.18 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.35 4.18 8.63 -39.29 -0.34 3.84 16 33 H 0.33 2.88 9.08 -39.29 -0.36 2.52 16 34 H 0.06 0.79 7.32 -51.93 -0.38 0.41 16 35 H 0.09 1.30 6.91 -51.93 -0.36 0.94 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.97 6.76 -51.93 -0.35 1.62 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -36.12 300.77 -7.67 -43.79 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.57 Total: 11.72 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -0.36 Total: -24.31 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.43 Total: -55.32 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: -2.20 Total: -70.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 74.45 SS G_CDS: -0.47 Total: 73.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -36.12 -7.67 -43.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238936262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.230 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds