Wall clock time and date at job start Mon Mar 30 2020 23:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99963 * 2 1 4 4 H 1.48500 * 109.47004 * 270.00007 * 3 2 1 5 5 H 1.48503 * 109.47250 * 30.00093 * 3 2 1 6 6 H 1.48498 * 109.47109 * 149.99983 * 3 2 1 7 7 C 1.37872 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99975 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00291 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40002 * 68.93613 * 9 7 2 11 11 O 1.42097 * 106.40306 * 296.01971 * 9 7 2 12 12 N 1.65593 * 107.22006 * 182.47591 * 9 7 2 13 13 C 1.44575 * 118.64611 * 263.94367 * 12 9 7 14 14 C 1.54863 * 109.58287 * 270.73305 * 13 12 9 15 15 C 1.47044 * 110.32019 * 288.67533 * 14 13 12 16 16 C 1.52572 * 114.29141 * 62.88175 * 15 14 13 17 17 O 1.42900 * 109.48952 * 34.90160 * 16 15 14 18 18 C 1.53002 * 109.49255 * 154.97448 * 16 15 14 19 19 N 1.46899 * 109.47056 * 179.54452 * 18 16 15 20 20 C 1.50881 * 109.34990 * 274.93839 * 16 15 14 21 21 C 1.47605 * 118.64211 * 83.97002 * 12 9 7 22 22 H 0.97009 * 120.00113 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.44571 * 30.76078 * 13 12 9 24 24 H 1.09006 * 109.45144 * 150.70071 * 13 12 9 25 25 H 1.08996 * 109.33246 * 48.99396 * 14 13 12 26 26 H 1.09005 * 109.32748 * 168.46930 * 14 13 12 27 27 H 1.08999 * 108.55969 * 301.62245 * 15 14 13 28 28 H 1.09000 * 108.38455 * 184.01427 * 15 14 13 29 29 H 0.96697 * 114.00410 * 58.57382 * 17 16 15 30 30 H 1.09004 * 109.46629 * 299.54066 * 18 16 15 31 31 H 1.08998 * 109.46675 * 59.53869 * 18 16 15 32 32 H 1.00897 * 111.00254 * 64.76594 * 19 18 16 33 33 H 1.00900 * 110.99819 * 188.72186 * 19 18 16 34 34 H 1.08998 * 109.36750 * 331.69872 * 20 16 15 35 35 H 1.08996 * 109.26149 * 212.01112 * 20 16 15 36 36 H 1.09005 * 108.94929 * 258.55338 * 21 12 9 37 37 H 1.09004 * 108.94844 * 17.17195 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4981 -2.8222 -1.2725 11 8 0.4055 -2.7688 1.2247 12 7 2.2469 -3.9346 0.0671 13 6 2.6656 -4.5609 -1.1669 14 6 1.7343 -5.7569 -1.4840 15 6 1.9879 -6.8634 -0.5494 16 6 1.6919 -6.5325 0.9102 17 8 0.5682 -5.6526 0.9812 18 6 1.3804 -7.8217 1.6730 19 7 1.1061 -7.5037 3.0807 20 6 2.8958 -5.8622 1.5250 21 6 2.7791 -4.3336 1.3848 22 1 -0.4851 0.8401 0.0004 23 1 2.6133 -3.8349 -1.9783 24 1 3.6909 -4.9166 -1.0637 25 1 0.6956 -5.4389 -1.3946 26 1 1.9183 -6.0970 -2.5032 27 1 3.0349 -7.1548 -0.6327 28 1 1.3694 -7.7111 -0.8444 29 1 -0.2370 -6.0098 0.5822 30 1 0.5070 -8.3025 1.2323 31 1 2.2352 -8.4952 1.6124 32 1 0.2715 -6.9436 3.1689 33 1 1.0376 -8.3443 3.6346 34 1 3.7980 -6.2039 1.0177 35 1 2.9534 -6.1250 2.5812 36 1 3.7658 -3.8897 1.5172 37 1 2.1159 -3.9564 2.1633 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238936262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:23 Heat of formation + Delta-G solvation = -166.044415 kcal Electronic energy + Delta-G solvation = -22021.783664 eV Core-core repulsion = 18731.150043 eV Total energy + Delta-G solvation = -3290.633622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65406 -37.29131 -36.80709 -35.88351 -35.11943 -34.67881 -33.77186 -32.24992 -28.22616 -27.59010 -26.39344 -23.71562 -21.96815 -20.93604 -20.57814 -18.67129 -18.15850 -17.47347 -17.15761 -17.04023 -16.81493 -15.95799 -15.61492 -15.35338 -15.24514 -14.89130 -14.33838 -14.23053 -13.93781 -13.66108 -13.38724 -13.10021 -13.00649 -12.97111 -12.71447 -12.38987 -12.30842 -12.25130 -12.03085 -11.83002 -11.67691 -11.41426 -11.23776 -11.13884 -10.81354 -10.63941 -9.51583 -9.42736 -8.69906 -7.44656 0.55294 1.31572 1.32272 1.48234 2.22229 2.59304 3.01504 3.34021 3.76606 3.92367 3.98171 4.03322 4.11628 4.25507 4.27977 4.38301 4.59012 4.62214 4.72728 4.79300 4.84596 4.96502 4.98491 5.06559 5.17136 5.17914 5.25693 5.33166 5.48349 5.56341 5.58991 5.93104 6.28996 6.36124 6.67654 6.81049 7.01908 8.23189 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.006462 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.956045 B = 4331.806489 C = 4499.452648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.249 1.249 7 C -1.059 5.059 8 H 0.110 0.890 9 S 2.734 3.266 10 O -1.048 7.048 11 O -1.031 7.031 12 N -0.981 5.981 13 C 0.122 3.878 14 C -0.133 4.133 15 C -0.135 4.135 16 C 0.133 3.867 17 O -0.561 6.561 18 C 0.047 3.953 19 N -0.852 5.852 20 C -0.105 4.105 21 C 0.133 3.867 22 H 0.297 0.703 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.366 0.634 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.343 0.657 33 H 0.349 0.651 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -15.510 1.093 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.803 3.197 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.172 1.172 7 C -1.191 5.191 8 H 0.129 0.871 9 S 2.834 3.166 10 O -1.038 7.038 11 O -1.022 7.022 12 N -0.819 5.819 13 C -0.004 4.004 14 C -0.173 4.173 15 C -0.173 4.173 16 C 0.092 3.908 17 O -0.366 6.366 18 C -0.084 4.084 19 N -0.383 5.383 20 C -0.144 4.144 21 C 0.008 3.992 22 H 0.107 0.893 23 H 0.073 0.927 24 H 0.118 0.882 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.213 0.787 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.427 -14.853 1.358 16.662 hybrid contribution -0.930 0.466 -0.479 1.146 sum 6.497 -14.387 0.879 15.810 Atomic orbital electron populations 1.70004 1.08743 1.32083 1.41921 1.26022 0.95386 1.05368 0.87620 0.85212 0.79233 0.75075 0.80166 1.17677 1.18416 1.17219 1.31325 1.07062 1.14341 1.66364 0.87149 0.99627 0.72677 0.73000 0.71276 1.93256 1.76298 1.88488 1.45776 1.93265 1.72465 1.88096 1.48325 1.56770 1.62038 1.51785 1.11260 1.21253 0.99455 0.95019 0.84657 1.21151 0.99765 0.96179 1.00155 1.21073 1.04025 0.98166 0.94081 1.20897 0.87067 0.89068 0.93757 1.86888 1.21159 1.45816 1.82705 1.22390 1.00996 0.95937 0.89068 1.58479 1.45878 1.24663 1.09315 1.21746 0.96635 0.92695 1.03276 1.21327 0.97838 0.97054 0.83018 0.89289 0.92703 0.88207 0.94252 0.89338 0.89218 0.90750 0.78730 0.94747 0.88777 0.84446 0.83763 0.89033 0.88654 0.92184 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.13 13.18 21.45 0.28 -55.84 16 2 C 0.07 4.00 5.46 84.65 0.46 4.47 16 3 Si 0.99 43.37 29.54 68.60 2.03 45.39 16 4 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 7 C -1.06 -62.34 9.74 67.73 0.66 -61.68 16 8 H 0.11 5.95 7.81 -2.91 -0.02 5.93 16 9 S 2.73 154.73 4.40 -56.49 -0.25 154.48 16 10 O -1.05 -64.54 16.34 -128.00 -2.09 -66.63 16 11 O -1.03 -64.57 15.95 -125.03 -1.99 -66.57 16 12 N -0.98 -40.96 1.92 -512.37 -0.98 -41.94 16 13 C 0.12 4.20 5.24 87.37 0.46 4.66 16 14 C -0.13 -3.90 5.46 29.38 0.16 -3.74 16 15 C -0.14 -2.96 4.51 28.60 0.13 -2.83 16 16 C 0.13 3.35 0.72 -11.62 -0.01 3.34 16 17 O -0.56 -19.30 8.21 -146.68 -1.20 -20.50 16 18 C 0.05 0.89 5.70 86.30 0.49 1.38 16 19 N -0.85 -17.32 8.47 -186.71 -1.58 -18.90 16 20 C -0.10 -2.78 5.12 30.22 0.15 -2.62 16 21 C 0.13 4.85 5.66 86.49 0.49 5.34 16 22 H 0.30 16.68 8.31 -92.70 -0.77 15.91 16 23 H 0.05 2.10 7.51 -2.38 -0.02 2.08 16 24 H 0.10 2.62 8.07 -2.38 -0.02 2.60 16 25 H 0.04 1.42 6.89 -2.39 -0.02 1.41 16 26 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.09 1.55 7.36 -2.39 -0.02 1.53 16 28 H 0.07 1.33 7.81 -2.39 -0.02 1.31 16 29 H 0.37 10.95 8.82 -74.06 -0.65 10.30 16 30 H 0.03 0.59 8.10 -2.38 -0.02 0.57 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.34 8.02 8.63 -89.70 -0.77 7.25 16 33 H 0.35 5.28 9.08 -89.69 -0.81 4.46 16 34 H 0.09 1.90 7.32 -2.39 -0.02 1.88 16 35 H 0.10 2.49 6.91 -2.39 -0.02 2.47 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 2.50 6.76 -2.39 -0.02 2.48 16 Total: -1.00 -81.90 300.77 -3.93 -85.83 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -1.13 Total: 36.37 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 3.00 Total: -51.68 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -2.28 Total: -116.69 kcal Atomic # 8 Polarization: -148.41 SS G_CDS: -5.29 Total: -153.70 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 154.73 SS G_CDS: -0.25 Total: 154.48 kcal Total: -81.90 -3.93 -85.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238936262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.216 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds